ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf88k04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9JKS6:PCLO_RAT Protein piccolo - Rattus norvegicus (Rat) 35 1.0
2Q9QYX7:PCLO_MOUSE Protein piccolo - Mus musculus (Mouse) 34 1.8
3P28904:TREC_ECOLI Trehalose-6-phosphate hydrolase - Escherichia ... 33 2.3
4Q2UUI3:CCR4_ASPOR Glucose-repressible alcohol dehydrogenase tran... 32 5.2
5Q24239:ANGEL_DROME Protein angel - Drosophila melanogaster (Frui... 32 8.9

>Q9JKS6:PCLO_RAT Protein piccolo - Rattus norvegicus (Rat)|
          Length = 5085
 Score = 34.7 bits (78), Expect = 1.0
 Identities = 32/119 (26%), Positives = 41/119 (34%), Gaps = 16/119 (13%)
 Frame = +2

Query: 506  TEGGTFWLSESPSVPGSISWGATAPCIATWATFQ----LKRIEPPGFSFQIVNTNL---- 661
            TEG  FW +E  +   S       P    W T Q     + I PPG    +    L    
Sbjct: 3289 TEGSQFWATEDATTTASTVVAIEIPQSQGWYTVQSDGVTQYIAPPGILSTVSEIPLTDVV 3348

Query: 662  --DEDSPRARRRSALLTWQH------IASLPPNLPVIYCGGFNTQKESMTGRFLLGRSR 814
              +E  P+ R   A +  Q+      +A  P NL  I   G  T  E    R    R R
Sbjct: 3349 VKEEKQPKKRSSGAKVRGQYDEMGESVADDPRNLKKIVDSGVQTDDEETADRSYASRRR 3407



to top

>Q9QYX7:PCLO_MOUSE Protein piccolo - Mus musculus (Mouse)|
          Length = 5038

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 32/119 (26%), Positives = 41/119 (34%), Gaps = 16/119 (13%)
 Frame = +2

Query: 506  TEGGTFWLSESPSVPGSISWGATAPCIATWATFQ----LKRIEPPGFSFQIVNTNL---- 661
            TEG  FW +E  +   S       P    W T Q     + I PPG    +    L    
Sbjct: 3243 TEGSQFWATEDATTTASTVVAIEIPQSQGWYTVQSDGVTQYIAPPGILSTVSEIPLTDVV 3302

Query: 662  --DEDSPRARRRSALLTWQH------IASLPPNLPVIYCGGFNTQKESMTGRFLLGRSR 814
              +E  P+ R   A +  Q+      +A  P NL  I   G  T  E    R    R R
Sbjct: 3303 VKEEKQPKKRSSGAKVRGQYDEMGESMADDPRNLKKIVDSGVQTDDEETADRTYASRRR 3361



to top

>P28904:TREC_ECOLI Trehalose-6-phosphate hydrolase - Escherichia coli|
          Length = 551

 Score = 33.5 bits (75), Expect = 2.3
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 683 RRRSALLTWQHIASLPPNLPVIYCGGFNTQKESMTGRFLLGRSREHGVVGDMRDAW 850
           R++ A+LTW +   L PN PV++C     + +++     L R  +    G MR  W
Sbjct: 466 RKQEAILTWGNYQDLLPNSPVLWCYRREWKGQTLLVIANLSREIQPWQAGQMRGNW 521



to top

>Q2UUI3:CCR4_ASPOR Glucose-repressible alcohol dehydrogenase transcriptional effector|
           - Aspergillus oryzae
          Length = 746

 Score = 32.3 bits (72), Expect = 5.2
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
 Frame = +1

Query: 175 GMASLSITVMTLNL---------HEGNQPSESPNSWEKRRDICVSVITSYSPTILCTQQ 324
           G ++  ITV++ N          H G  PS +  SWE RRD+ +S + S+   I+C Q+
Sbjct: 372 GTSTEKITVLSYNALCDSSATQSHFGYTPSRAL-SWEFRRDVILSELRSHDSDIVCLQE 429



to top

>Q24239:ANGEL_DROME Protein angel - Drosophila melanogaster (Fruit fly)|
          Length = 354

 Score = 31.6 bits (70), Expect = 8.9
 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = +2

Query: 584 IATWATFQLKRIEPPGFSFQIVNTNLDEDSPRARRRSALLT--WQHIASLPPNLPVIYCG 757
           +A +A F+ K+ +     F +  T+L  ++ R+  R A +    + + S   + P++  G
Sbjct: 189 VALFARFRFKKQQEQQKEFVVATTHLLFNTKRSDVRCAQVERILEELQSFSTDTPIVLTG 248

Query: 758 GFNTQKESMTGRFLLGRS 811
            FN+  +S    FL+G++
Sbjct: 249 DFNSLPDSSPIEFLVGKN 266


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 238,739,004
Number of extensions: 4971456
Number of successful extensions: 12753
Number of sequences better than 10.0: 5
Number of HSP's gapped: 12730
Number of HSP's successfully gapped: 5
Length of query: 489
Length of database: 100,686,439
Length adjustment: 117
Effective length of query: 372
Effective length of database: 68,593,924
Effective search space: 25516939728
Effective search space used: 25516939728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top