ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf88j09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001074191.1| Oryza sativa (japonica cultivar-group) Os11g0265400 (Os11g0265400) mRNA, complete cds Length = 1242 Score = 864 bits (436), Expect = 0.0 Identities = 805/928 (86%) Strand = Plus / Plus Query: 98 tcctcttcaagttcgtcaccgccgatggggatttcaccctcttgtcgtgcggccggccgc 157 ||||||||||||||| ||||| ||||||||||||||| || | ||| |||| ||||| Sbjct: 200 tcctcttcaagttcgccaccgtcgatggggatttcacgctggtctcgcgcggggcgccgc 259 Query: 158 ggcgggacaaagtggacggcaaggttgtgtggataacgggagcgagccgtgggattgggg 217 ||||||| || |||||||| |||||||||||||| || ||||| ||||| ||||| |||| Sbjct: 260 ggcgggagaaggtggacgggaaggttgtgtggatcactggagccagccgcgggatagggg 319 Query: 218 aggttctttcgatgcagtttgcgagtttaggagcaaagctcatactatctgcacgtaaca 277 | |||||| | ||||| ||||| ||||||||||||||||| ||||||||||| || |||| Sbjct: 320 aagttcttgcaatgcaatttgctagtttaggagcaaagctgatactatctgctcggaaca 379 Query: 278 aggaggagcttgagagagtgaaacataacatcatgagcaagcatccagatagcaaagttg 337 |||||||||||||||||||||||||||||||||| | |||||||||| |||||| ||||| Sbjct: 380 aggaggagcttgagagagtgaaacataacatcatcaacaagcatccaaatagcagagttg 439 Query: 338 aagtgttacccatggatttatcatctgatgaaaaatctctgaaagaagttgtacattcag 397 |||| |||||||||||||||||||| | |||| | ||||||||||| ||||||| || Sbjct: 440 aagtattacccatggatttatcatcgggtgaagagtctctgaaagagcatgtacatgaag 499 Query: 398 cggaatctctcttttccagtgctggcattgactatatgatgcacaatgcagcctttgagc 457 | || || ||||| |||| ||| ||| ||||||||||||| || |||||||| ||||||| Sbjct: 500 cagagtcactcttctccaatgcaggcgttgactatatgatccataatgcagcatttgagc 559 Query: 458 gtccaaaaaggggagccctggaagaaaccgaggaaggtcttaaggctacttttaaggtca 517 ||||||||||| | || ||||||||||| || |||||||||||||||||||| | |||| Sbjct: 560 gtccaaaaaggagggctctggaagaaactgaacaaggtcttaaggctacttttgatgtca 619 Query: 518 atgtctttggaacaattactttgactcgccttcttgcacccttcatgttggatagaggga 577 |||||||||| || |||||| | ||||||||||||||||||| ||| |||||||||||| Sbjct: 620 atgtctttggtactattactctaactcgccttcttgcaccctcaatgatggatagaggga 679 Query: 578 tgggtcattttgttgtgatgagtagtgcagctggaaaggtgcccacacctggtcaggctc 637 |||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||| Sbjct: 680 tgggccattttgttgtgatgagtagtgcagctggaaaggttccatcacctggccaggctc 739 Query: 638 tttactctgcttccaaacatgctctcaatgggtactttgcttctctgcgttctgagttat 697 |||| || || ||||||||||| |||||||| || ||| |||||||||| |||||||||| Sbjct: 740 tttattcagcctccaaacatgccctcaatggctatttttcttctctgcgctctgagttat 799 Query: 698 gtacgaaaggcattaaggtcactgttgtctgtcctggacctattgaaacaccagaatctt 757 |||| |||||||||||||| ||||||||||||||||| || || ||| |||| |||||| Sbjct: 800 gtacaaaaggcattaaggttactgttgtctgtcctgggccgatcgaagcaccccaatctt 859 Query: 758 ctggtgcaacttcttcatcacaaaggcattcgtccgagaaacgtgtttcagtggaaagat 817 |||||||||| ||||||||||||| | || || |||||||||||| |||| ||||||| Sbjct: 860 ctggtgcaacctcttcatcacaaaaaccatcttctgagaaacgtgttccagttgaaagat 919 Query: 818 gtgctgaactgacaatagttgccgcaactcatggactaaaagaagcatggatatcatatc 877 | |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 920 gcgctgaactgacaattgttgcagcaactcacggactaaaagaagcatggatatcatatc 979 Query: 878 agcctgtgctggctgttatgtacgtggtgcaatacatgccaacaattggatgctggctta 937 |||||||||| | ||||||||| |||||||||||||||| || |||| |||||||| Sbjct: 980 agcctgtgctaggggttatgtacttggtgcaatacatgccgacggttggtctctggctta 1039 Query: 938 tggataaggttggtgcgaagcgagttgatgccgctgcaaagaaaggcaacgcctacagct 997 |||| ||||||||||| ||||| | |||| || |||||||||||||| || ||| | | Sbjct: 1040 tggacaaggttggtgcaaagcggctggatgtagcagcaaagaaaggcaatgcgtacggtt 1099 Query: 998 ggaatctcctcttcggtggcaaaaagtc 1025 |||||||||| ||||||||||| ||||| Sbjct: 1100 ggaatctccttttcggtggcaagaagtc 1127
>dbj|AK102327.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090L02, full insert sequence Length = 1245 Score = 864 bits (436), Expect = 0.0 Identities = 805/928 (86%) Strand = Plus / Plus Query: 98 tcctcttcaagttcgtcaccgccgatggggatttcaccctcttgtcgtgcggccggccgc 157 ||||||||||||||| ||||| ||||||||||||||| || | ||| |||| ||||| Sbjct: 203 tcctcttcaagttcgccaccgtcgatggggatttcacgctggtctcgcgcggggcgccgc 262 Query: 158 ggcgggacaaagtggacggcaaggttgtgtggataacgggagcgagccgtgggattgggg 217 ||||||| || |||||||| |||||||||||||| || ||||| ||||| ||||| |||| Sbjct: 263 ggcgggagaaggtggacgggaaggttgtgtggatcactggagccagccgcgggatagggg 322 Query: 218 aggttctttcgatgcagtttgcgagtttaggagcaaagctcatactatctgcacgtaaca 277 | |||||| | ||||| ||||| ||||||||||||||||| ||||||||||| || |||| Sbjct: 323 aagttcttgcaatgcaatttgctagtttaggagcaaagctgatactatctgctcggaaca 382 Query: 278 aggaggagcttgagagagtgaaacataacatcatgagcaagcatccagatagcaaagttg 337 |||||||||||||||||||||||||||||||||| | |||||||||| |||||| ||||| Sbjct: 383 aggaggagcttgagagagtgaaacataacatcatcaacaagcatccaaatagcagagttg 442 Query: 338 aagtgttacccatggatttatcatctgatgaaaaatctctgaaagaagttgtacattcag 397 |||| |||||||||||||||||||| | |||| | ||||||||||| ||||||| || Sbjct: 443 aagtattacccatggatttatcatcgggtgaagagtctctgaaagagcatgtacatgaag 502 Query: 398 cggaatctctcttttccagtgctggcattgactatatgatgcacaatgcagcctttgagc 457 | || || ||||| |||| ||| ||| ||||||||||||| || |||||||| ||||||| Sbjct: 503 cagagtcactcttctccaatgcaggcgttgactatatgatccataatgcagcatttgagc 562 Query: 458 gtccaaaaaggggagccctggaagaaaccgaggaaggtcttaaggctacttttaaggtca 517 ||||||||||| | || ||||||||||| || |||||||||||||||||||| | |||| Sbjct: 563 gtccaaaaaggagggctctggaagaaactgaacaaggtcttaaggctacttttgatgtca 622 Query: 518 atgtctttggaacaattactttgactcgccttcttgcacccttcatgttggatagaggga 577 |||||||||| || |||||| | ||||||||||||||||||| ||| |||||||||||| Sbjct: 623 atgtctttggtactattactctaactcgccttcttgcaccctcaatgatggatagaggga 682 Query: 578 tgggtcattttgttgtgatgagtagtgcagctggaaaggtgcccacacctggtcaggctc 637 |||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||| Sbjct: 683 tgggccattttgttgtgatgagtagtgcagctggaaaggttccatcacctggccaggctc 742 Query: 638 tttactctgcttccaaacatgctctcaatgggtactttgcttctctgcgttctgagttat 697 |||| || || ||||||||||| |||||||| || ||| |||||||||| |||||||||| Sbjct: 743 tttattcagcctccaaacatgccctcaatggctatttttcttctctgcgctctgagttat 802 Query: 698 gtacgaaaggcattaaggtcactgttgtctgtcctggacctattgaaacaccagaatctt 757 |||| |||||||||||||| ||||||||||||||||| || || ||| |||| |||||| Sbjct: 803 gtacaaaaggcattaaggttactgttgtctgtcctgggccgatcgaagcaccccaatctt 862 Query: 758 ctggtgcaacttcttcatcacaaaggcattcgtccgagaaacgtgtttcagtggaaagat 817 |||||||||| ||||||||||||| | || || |||||||||||| |||| ||||||| Sbjct: 863 ctggtgcaacctcttcatcacaaaaaccatcttctgagaaacgtgttccagttgaaagat 922 Query: 818 gtgctgaactgacaatagttgccgcaactcatggactaaaagaagcatggatatcatatc 877 | |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 923 gcgctgaactgacaattgttgcagcaactcacggactaaaagaagcatggatatcatatc 982 Query: 878 agcctgtgctggctgttatgtacgtggtgcaatacatgccaacaattggatgctggctta 937 |||||||||| | ||||||||| |||||||||||||||| || |||| |||||||| Sbjct: 983 agcctgtgctaggggttatgtacttggtgcaatacatgccgacggttggtctctggctta 1042 Query: 938 tggataaggttggtgcgaagcgagttgatgccgctgcaaagaaaggcaacgcctacagct 997 |||| ||||||||||| ||||| | |||| || |||||||||||||| || ||| | | Sbjct: 1043 tggacaaggttggtgcaaagcggctggatgtagcagcaaagaaaggcaatgcgtacggtt 1102 Query: 998 ggaatctcctcttcggtggcaaaaagtc 1025 |||||||||| ||||||||||| ||||| Sbjct: 1103 ggaatctccttttcggtggcaagaagtc 1130
>gb|AY104440.1| Zea mays PCO131508 mRNA sequence Length = 1384 Score = 684 bits (345), Expect = 0.0 Identities = 701/821 (85%), Gaps = 9/821 (1%) Strand = Plus / Plus Query: 172 gacggcaaggttgtgtggataacgggagcgagccgtgggattggggaggttctttcgatg 231 ||||||||||| |||||||| || ||||| ||||| |||||||||||||||||| | ||| Sbjct: 254 gacggcaaggtcgtgtggattactggagctagccgcgggattggggaggttcttgcaatg 313 Query: 232 cagtttgcgagtttaggagcaaagctcatactatctgcacgtaacaaggaggagcttgag 291 || || || | ||||||||||||||| ||||||||||||||||||||||| | ||||| | Sbjct: 314 cacttcgcaaatttaggagcaaagctgatactatctgcacgtaacaaggacgcgcttgcg 373 Query: 292 agagtgaaacataacatcatgagcaagcatccagatagcaaagttgaagtgttacccatg 351 ||||||||| | |||||| | |||||| |||||||||||| ||||||| ||||||||||| Sbjct: 374 agagtgaaaaaaaacatcctcagcaagaatccagatagcagagttgaaatgttacccatg 433 Query: 352 gatttatcatctgatgaaaaatctctgaaagaagttgtacattcagcggaatctctcttt 411 ||||||||| ||| |||| |||||||||||||||| |||||| || ||||| | ||| Sbjct: 434 gatttatcagctggtgaagaatctctgaaagaagtcgtacatgtggcagaatcatttttt 493 Query: 412 tccagtgctggcattgactatatgatgcacaatgcagcctttgagcgtccaaaaagggga 471 || | ||| ||| ||||||||||| | || ||||||||||| || ||||| ||| || | Sbjct: 494 tctaatgcaggcgttgactatatggtccataatgcagccttcgaacgtcctaaacggagg 553 Query: 472 gccctggaagaaaccgaggaaggtcttaaggctacttttaaggtcaatgtctttggaaca 531 || || ||||||| |||||||||||||||||||| || || ||||||||||| ||||| Sbjct: 554 gctctagaagaaagtgaggaaggtcttaaggctacattgaatgtcaatgtcttcggaact 613 Query: 532 attactttgactcgccttcttgcacccttcatgttggatagagggatgggtcattttgtt 591 |||||||| ||||||||||| ||||| | |||| | ||||||| |||||| ||||||||| Sbjct: 614 attactttaactcgccttctagcaccttacatgcttgatagagagatgggccattttgtt 673 Query: 592 gtgatgagtagtgcagctggaaaggtgcccacacctggtcaggctctttactctgcttcc 651 |||||||||||||| ||||||||||| || | ||||||||||| |||||||||| ||| Sbjct: 674 gtgatgagtagtgctgctggaaaggttcctgctcctggtcaggccatttactctgcctcc 733 Query: 652 aaacatgctctcaatgggtactttgcttctctgcgttctgagttatgtacgaaaggcatt 711 ||||||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||||||| Sbjct: 734 aaacatgctcttaatggttactttgcttctctgcgatctgagttgtgtacaaaaggcatt 793 Query: 712 aaggtcactgttgtctgtcctggacctattgaaacaccagaatcttctggtgcaacttct 771 |||||||||||| |||| |||||||| |||||||||| | ||||||||| |||| ||||| Sbjct: 794 aaggtcactgttatctgccctggaccgattgaaacactacaatcttctgctgcagcttct 853 Query: 772 tcatcacaaaggcattcgtccgagaaac---------gtgtttcagtggaaagatgtgct 822 ||||| |||| ||||| | ||||||| ||||||| |||||| | |||| | Sbjct: 854 tcatcgcaaacacattctgctgagaaacgtgagaaacgtgtttcggtggaacggtgtgtt 913 Query: 823 gaactgacaatagttgccgcaactcatggactaaaagaagcatggatatcatatcagcct 882 ||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||| Sbjct: 914 gaactgacaattgttgctgctactcatggactgaaagaagcatggatatcatatcagcct 973 Query: 883 gtgctggctgttatgtacgtggtgcaatacatgccaacaattggatgctggcttatggat 942 |||||| ||||||||||| ||||||||||||||||||||||||| | ||||| ||||| Sbjct: 974 gtgctgactgttatgtacttggtgcaatacatgccaacaattggttattggctaatggac 1033 Query: 943 aaggttggtgcgaagcgagttgatgccgctgcaaagaaagg 983 ||||||||||| || || | ||||| || ||||||||||| Sbjct: 1034 aaggttggtgcaaaacggctggatgcggccgcaaagaaagg 1074
>gb|BT016950.1| Zea mays clone E04912705B06.c mRNA sequence Length = 728 Score = 196 bits (99), Expect = 1e-46 Identities = 168/191 (87%) Strand = Plus / Minus Query: 793 gagaaacgtgtttcagtggaaagatgtgctgaactgacaatagttgccgcaactcatgga 852 ||||| |||||||| |||||| | |||| |||||||||||| ||||| || ||||||||| Sbjct: 531 gagaagcgtgtttcggtggaacggtgtgttgaactgacaattgttgctgctactcatgga 472 Query: 853 ctaaaagaagcatggatatcatatcagcctgtgctggctgttatgtacgtggtgcaatac 912 || ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 471 ctgaaagaagcatggatatcatatcagcctgtgctgactgttatgtacttggtgcaatac 412 Query: 913 atgccaacaattggatgctggcttatggataaggttggtgcgaagcgagttgatgccgct 972 |||||||||||||| | ||||| ||||| ||||||||||| || || | ||||| || Sbjct: 411 atgccaacaattggttattggctaatggacaaggttggtgcaaaacggctggatgcggcc 352 Query: 973 gcaaagaaagg 983 ||||||||||| Sbjct: 351 gcaaagaaagg 341 Score = 184 bits (93), Expect = 6e-43 Identities = 141/157 (89%) Strand = Plus / Minus Query: 625 cctggtcaggctctttactctgcttccaaacatgctctcaatgggtactttgcttctctg 684 ||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||||| Sbjct: 711 cctggtcaggccatttactctgcctccaaacatgctcttaatggttactttgcttctctg 652 Query: 685 cgttctgagttatgtacgaaaggcattaaggtcactgttgtctgtcctggacctattgaa 744 || |||||||| ||||| ||||||||||||||||||||| |||| |||||||| |||||| Sbjct: 651 cgatctgagttgtgtacaaaaggcattaaggtcactgttatctgccctggaccgattgaa 592 Query: 745 acaccagaatcttctggtgcaacttcttcatcacaaa 781 |||| | ||||||||| |||| |||||||||| |||| Sbjct: 591 acactacaatcttctgctgcagcttcttcatcgcaaa 555
>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24 map C535, complete sequence Length = 174759 Score = 131 bits (66), Expect = 7e-27 Identities = 90/98 (91%) Strand = Plus / Minus Query: 214 ggggaggttctttcgatgcagtttgcgagtttaggagcaaagctcatactatctgcacgt 273 ||||| |||||| | ||||| ||||| ||||||||||||||||| ||||||||||| || Sbjct: 41631 ggggaagttcttgcaatgcaatttgctagtttaggagcaaagctgatactatctgctcgg 41572 Query: 274 aacaaggaggagcttgagagagtgaaacataacatcat 311 |||||||||||||||||||||||||||||||||||||| Sbjct: 41571 aacaaggaggagcttgagagagtgaaacataacatcat 41534 Score = 123 bits (62), Expect = 2e-24 Identities = 80/86 (93%) Strand = Plus / Minus Query: 794 agaaacgtgtttcagtggaaagatgtgctgaactgacaatagttgccgcaactcatggac 853 ||||||||||| |||| |||||||| |||||||||||||| ||||| |||||||| |||| Sbjct: 39533 agaaacgtgttccagttgaaagatgcgctgaactgacaattgttgcagcaactcacggac 39474 Query: 854 taaaagaagcatggatatcatatcag 879 |||||||||||||||||||||||||| Sbjct: 39473 taaaagaagcatggatatcatatcag 39448 Score = 119 bits (60), Expect = 3e-23 Identities = 126/148 (85%) Strand = Plus / Minus Query: 315 caagcatccagatagcaaagttgaagtgttacccatggatttatcatctgatgaaaaatc 374 |||||||||| |||||| ||||||||| |||||||||||||||||||| | |||| | || Sbjct: 41417 caagcatccaaatagcagagttgaagtattacccatggatttatcatcgggtgaagagtc 41358 Query: 375 tctgaaagaagttgtacattcagcggaatctctcttttccagtgctggcattgactatat 434 ||||||||| ||||||| ||| || || ||||| |||| ||| ||| |||||||||| Sbjct: 41357 tctgaaagagcatgtacatgaagcagagtcactcttctccaatgcaggcgttgactatat 41298 Query: 435 gatgcacaatgcagcctttgagcgtcca 462 ||| || |||||||| |||||||||||| Sbjct: 41297 gatccataatgcagcatttgagcgtcca 41270 Score = 109 bits (55), Expect = 3e-20 Identities = 85/95 (89%) Strand = Plus / Minus Query: 500 aggctacttttaaggtcaatgtctttggaacaattactttgactcgccttcttgcaccct 559 ||||||||||| | |||||||||||||| || |||||| | ||||||||||||||||||| Sbjct: 40963 aggctacttttgatgtcaatgtctttggtactattactctaactcgccttcttgcaccct 40904 Query: 560 tcatgttggatagagggatgggtcattttgttgtg 594 ||| |||||||||||||||| |||||||||||| Sbjct: 40903 caatgatggatagagggatgggccattttgttgtg 40869 Score = 107 bits (54), Expect = 1e-19 Identities = 81/90 (90%) Strand = Plus / Minus Query: 692 agttatgtacgaaaggcattaaggtcactgttgtctgtcctggacctattgaaacaccag 751 |||||||||| |||||||||||||| ||||||||||||||||| || || ||| |||| Sbjct: 40066 agttatgtacaaaaggcattaaggttactgttgtctgtcctgggccgatcgaagcacccc 40007 Query: 752 aatcttctggtgcaacttcttcatcacaaa 781 |||||||||||||||| ||||||||||||| Sbjct: 40006 aatcttctggtgcaacctcttcatcacaaa 39977 Score = 103 bits (52), Expect = 2e-18 Identities = 88/100 (88%) Strand = Plus / Minus Query: 594 gatgagtagtgcagctggaaaggtgcccacacctggtcaggctctttactctgcttccaa 653 |||||||||||||||||||||||| || ||||||| ||||||||||| || || ||||| Sbjct: 40780 gatgagtagtgcagctggaaaggttccatcacctggccaggctctttattcagcctccaa 40721 Query: 654 acatgctctcaatgggtactttgcttctctgcgttctgag 693 |||||| |||||||| || ||| |||||||||| |||||| Sbjct: 40720 acatgccctcaatggctatttttcttctctgcgctctgag 40681 Score = 60.0 bits (30), Expect = 2e-05 Identities = 69/82 (84%) Strand = Plus / Minus Query: 944 aggttggtgcgaagcgagttgatgccgctgcaaagaaaggcaacgcctacagctggaatc 1003 |||||||||| ||||| | |||| || |||||||||||||| || ||| | ||||||| Sbjct: 38368 aggttggtgcaaagcggctggatgtagcagcaaagaaaggcaatgcgtacggttggaatc 38309 Query: 1004 tcctcttcggtggcaaaaagtc 1025 |||| ||||||||||| ||||| Sbjct: 38308 tccttttcggtggcaagaagtc 38287 Score = 54.0 bits (27), Expect = 0.001 Identities = 60/71 (84%) Strand = Plus / Minus Query: 877 cagcctgtgctggctgttatgtacgtggtgcaatacatgccaacaattggatgctggctt 936 ||||||||||| | ||||||||| |||||||||||||||| || |||| ||||||| Sbjct: 39058 cagcctgtgctaggggttatgtacttggtgcaatacatgccgacggttggtctctggctt 38999 Query: 937 atggataaggt 947 ||||| ||||| Sbjct: 38998 atggacaaggt 38988
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 131 bits (66), Expect = 7e-27 Identities = 90/98 (91%) Strand = Plus / Plus Query: 214 ggggaggttctttcgatgcagtttgcgagtttaggagcaaagctcatactatctgcacgt 273 ||||| |||||| | ||||| ||||| ||||||||||||||||| ||||||||||| || Sbjct: 8976596 ggggaagttcttgcaatgcaatttgctagtttaggagcaaagctgatactatctgctcgg 8976655 Query: 274 aacaaggaggagcttgagagagtgaaacataacatcat 311 |||||||||||||||||||||||||||||||||||||| Sbjct: 8976656 aacaaggaggagcttgagagagtgaaacataacatcat 8976693 Score = 123 bits (62), Expect = 2e-24 Identities = 80/86 (93%) Strand = Plus / Plus Query: 794 agaaacgtgtttcagtggaaagatgtgctgaactgacaatagttgccgcaactcatggac 853 ||||||||||| |||| |||||||| |||||||||||||| ||||| |||||||| |||| Sbjct: 8978694 agaaacgtgttccagttgaaagatgcgctgaactgacaattgttgcagcaactcacggac 8978753 Query: 854 taaaagaagcatggatatcatatcag 879 |||||||||||||||||||||||||| Sbjct: 8978754 taaaagaagcatggatatcatatcag 8978779 Score = 119 bits (60), Expect = 3e-23 Identities = 126/148 (85%) Strand = Plus / Plus Query: 315 caagcatccagatagcaaagttgaagtgttacccatggatttatcatctgatgaaaaatc 374 |||||||||| |||||| ||||||||| |||||||||||||||||||| | |||| | || Sbjct: 8976810 caagcatccaaatagcagagttgaagtattacccatggatttatcatcgggtgaagagtc 8976869 Query: 375 tctgaaagaagttgtacattcagcggaatctctcttttccagtgctggcattgactatat 434 ||||||||| ||||||| ||| || || ||||| |||| ||| ||| |||||||||| Sbjct: 8976870 tctgaaagagcatgtacatgaagcagagtcactcttctccaatgcaggcgttgactatat 8976929 Query: 435 gatgcacaatgcagcctttgagcgtcca 462 ||| || |||||||| |||||||||||| Sbjct: 8976930 gatccataatgcagcatttgagcgtcca 8976957 Score = 109 bits (55), Expect = 3e-20 Identities = 85/95 (89%) Strand = Plus / Plus Query: 500 aggctacttttaaggtcaatgtctttggaacaattactttgactcgccttcttgcaccct 559 ||||||||||| | |||||||||||||| || |||||| | ||||||||||||||||||| Sbjct: 8977264 aggctacttttgatgtcaatgtctttggtactattactctaactcgccttcttgcaccct 8977323 Query: 560 tcatgttggatagagggatgggtcattttgttgtg 594 ||| |||||||||||||||| |||||||||||| Sbjct: 8977324 caatgatggatagagggatgggccattttgttgtg 8977358 Score = 107 bits (54), Expect = 1e-19 Identities = 81/90 (90%) Strand = Plus / Plus Query: 692 agttatgtacgaaaggcattaaggtcactgttgtctgtcctggacctattgaaacaccag 751 |||||||||| |||||||||||||| ||||||||||||||||| || || ||| |||| Sbjct: 8978161 agttatgtacaaaaggcattaaggttactgttgtctgtcctgggccgatcgaagcacccc 8978220 Query: 752 aatcttctggtgcaacttcttcatcacaaa 781 |||||||||||||||| ||||||||||||| Sbjct: 8978221 aatcttctggtgcaacctcttcatcacaaa 8978250 Score = 103 bits (52), Expect = 2e-18 Identities = 88/100 (88%) Strand = Plus / Plus Query: 594 gatgagtagtgcagctggaaaggtgcccacacctggtcaggctctttactctgcttccaa 653 |||||||||||||||||||||||| || ||||||| ||||||||||| || || ||||| Sbjct: 8977447 gatgagtagtgcagctggaaaggttccatcacctggccaggctctttattcagcctccaa 8977506 Query: 654 acatgctctcaatgggtactttgcttctctgcgttctgag 693 |||||| |||||||| || ||| |||||||||| |||||| Sbjct: 8977507 acatgccctcaatggctatttttcttctctgcgctctgag 8977546 Score = 60.0 bits (30), Expect = 2e-05 Identities = 69/82 (84%) Strand = Plus / Plus Query: 944 aggttggtgcgaagcgagttgatgccgctgcaaagaaaggcaacgcctacagctggaatc 1003 |||||||||| ||||| | |||| || |||||||||||||| || ||| | ||||||| Sbjct: 8979859 aggttggtgcaaagcggctggatgtagcagcaaagaaaggcaatgcgtacggttggaatc 8979918 Query: 1004 tcctcttcggtggcaaaaagtc 1025 |||| ||||||||||| ||||| Sbjct: 8979919 tccttttcggtggcaagaagtc 8979940 Score = 54.0 bits (27), Expect = 0.001 Identities = 60/71 (84%) Strand = Plus / Plus Query: 877 cagcctgtgctggctgttatgtacgtggtgcaatacatgccaacaattggatgctggctt 936 ||||||||||| | ||||||||| |||||||||||||||| || |||| ||||||| Sbjct: 8979169 cagcctgtgctaggggttatgtacttggtgcaatacatgccgacggttggtctctggctt 8979228 Query: 937 atggataaggt 947 ||||| ||||| Sbjct: 8979229 atggacaaggt 8979239
>emb|CT987129.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 551 Score = 83.8 bits (42), Expect = 2e-12 Identities = 93/110 (84%) Strand = Plus / Plus Query: 811 gaaagatgtgctgaactgacaatagttgccgcaactcatggactaaaagaagcatggata 870 ||||||||||||||| |||| ||| |||| || ||||||| |||| ||||| |||||| Sbjct: 87 gaaagatgtgctgaattgactataattgcagcctctcatggcttaaaggaagcttggata 146 Query: 871 tcatatcagcctgtgctggctgttatgtacgtggtgcaatacatgccaac 920 ||||| |||||||| || ||||| ||||| ||||||| ||||||||||| Sbjct: 147 tcataccagcctgtacttgctgtgatgtatttggtgcagtacatgccaac 196
>ref|NM_111204.3| Arabidopsis thaliana oxidoreductase (AT3G03330) mRNA, complete cds Length = 1249 Score = 71.9 bits (36), Expect = 6e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 579 gggtcattttgttgtgatgagtagtgcagctggaaaggtgcccacacctggtcaggctct 638 |||||||||||||||||| || ||||| || |||||||| || ||||||| |||||| | Sbjct: 553 gggtcattttgttgtgataagcagtgctgcaggaaaggtaccatcacctggacaggctat 612 Query: 639 ttactctgcttccaaacatgctct 662 || |||||||| ||||||||||| Sbjct: 613 atattctgcttcaaaacatgctct 636
>gb|BT000550.1| Arabidopsis thaliana unknown protein (At3g03330/T21P5_25) mRNA, complete cds Length = 987 Score = 71.9 bits (36), Expect = 6e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 579 gggtcattttgttgtgatgagtagtgcagctggaaaggtgcccacacctggtcaggctct 638 |||||||||||||||||| || ||||| || |||||||| || ||||||| |||||| | Sbjct: 531 gggtcattttgttgtgataagcagtgctgcaggaaaggtaccatcacctggacaggctat 590 Query: 639 ttactctgcttccaaacatgctct 662 || |||||||| ||||||||||| Sbjct: 591 atattctgcttcaaaacatgctct 614
>gb|AY127020.1| Arabidopsis thaliana AT3g03330/T21P5_25 mRNA, complete cds Length = 1251 Score = 71.9 bits (36), Expect = 6e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 579 gggtcattttgttgtgatgagtagtgcagctggaaaggtgcccacacctggtcaggctct 638 |||||||||||||||||| || ||||| || |||||||| || ||||||| |||||| | Sbjct: 542 gggtcattttgttgtgataagcagtgctgcaggaaaggtaccatcacctggacaggctat 601 Query: 639 ttactctgcttccaaacatgctct 662 || |||||||| ||||||||||| Sbjct: 602 atattctgcttcaaaacatgctct 625
>ref|NM_111206.2| Arabidopsis thaliana oxidoreductase (AT3G03350) mRNA, complete cds Length = 546 Score = 69.9 bits (35), Expect = 2e-08 Identities = 71/83 (85%) Strand = Plus / Plus Query: 580 ggtcattttgttgtgatgagtagtgcagctggaaaggtgcccacacctggtcaggctctt 639 ||||||||||||||||| || ||||| || |||||||| || ||||||| |||||| | Sbjct: 331 ggtcattttgttgtgataagcagtgctgcaggaaaggtaccatcacctggacaggctata 390 Query: 640 tactctgcttccaaacatgctct 662 || |||||||| ||||||||||| Sbjct: 391 tattctgcttcaaaacatgctct 413
>gb|BT004131.1| Arabidopsis thaliana clone RAFL15-09-P04 (R20704) unknown protein (At3g03360) mRNA, complete cds Length = 2820 Score = 69.9 bits (35), Expect = 2e-08 Identities = 71/83 (85%) Strand = Plus / Plus Query: 580 ggtcattttgttgtgatgagtagtgcagctggaaaggtgcccacacctggtcaggctctt 639 ||||||||||||||||| || ||||| || |||||||| || ||||||| |||||| | Sbjct: 475 ggtcattttgttgtgataagcagtgctgcaggaaaggtaccatcacctggacaggctata 534 Query: 640 tactctgcttccaaacatgctct 662 || |||||||| ||||||||||| Sbjct: 535 tattctgcttcaaaacatgctct 557
>gb|AC147179.15| Medicago truncatula clone mth2-142n19, complete sequence Length = 113361 Score = 56.0 bits (28), Expect = 3e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 836 ttgccgcaactcatggactaaaagaagcatggatatcatatcag 879 |||||||||||||||| |||| ||||| ||||||||||||||| Sbjct: 90375 ttgccgcaactcatggcttaaaggaagcttggatatcatatcag 90332 Score = 46.1 bits (23), Expect = 0.33 Identities = 59/71 (83%) Strand = Plus / Minus Query: 877 cagcctgtgctggctgttatgtacgtggtgcaatacatgccaacaattggatgctggctt 936 ||||||||||| ||||| ||||| | || |||||||||||||| ||||| | ||||| Sbjct: 89911 cagcctgtgcttgctgtcatgtatcttgttcaatacatgccaactattggttattggctc 89852 Query: 937 atggataaggt 947 ||||| ||||| Sbjct: 89851 atggacaaggt 89841
>emb|BX842258.1|CNS09YBZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS7ZA10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 918 Score = 54.0 bits (27), Expect = 0.001 Identities = 69/83 (83%) Strand = Plus / Plus Query: 580 ggtcattttgttgtgatgagtagtgcagctggaaaggtgcccacacctggtcaggctctt 639 ||||||||||||||||| || ||||| || ||| |||| || ||||||| |||||| | Sbjct: 454 ggtcattttgttgtgataagcagtgctgcaggagaggtaccatcacctggacaggctata 513 Query: 640 tactctgcttccaaacatgctct 662 || |||||||| |||||||||| Sbjct: 514 tattctgcttcagaacatgctct 536
>gb|AC182571.2| Mimulus guttatus clone MGBa-65G3, complete sequence Length = 154968 Score = 46.1 bits (23), Expect = 0.33 Identities = 59/71 (83%) Strand = Plus / Minus Query: 877 cagcctgtgctggctgttatgtacgtggtgcaatacatgccaacaattggatgctggctt 936 |||||||||||||| || |||||| | ||||| || ||||||||| | || | ||||| Sbjct: 2235 cagcctgtgctggcagtgatgtacctagtgcagtatatgccaacagtcggtttttggctc 2176 Query: 937 atggataaggt 947 ||||||||||| Sbjct: 2175 atggataaggt 2165 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 859 gaagcatggatatcatatcag 879 ||||||||||||||||||||| Sbjct: 2758 gaagcatggatatcatatcag 2738
>gb|AC167815.3| Mus musculus BAC clone RP23-463H10 from chromosome 5, complete sequence Length = 198336 Score = 46.1 bits (23), Expect = 0.33 Identities = 23/23 (100%) Strand = Plus / Minus Query: 553 gcacccttcatgttggatagagg 575 ||||||||||||||||||||||| Sbjct: 21509 gcacccttcatgttggatagagg 21487
>gb|AC138679.10| Mus musculus chromosome 5, clone RP23-177I4, complete sequence Length = 230184 Score = 46.1 bits (23), Expect = 0.33 Identities = 23/23 (100%) Strand = Plus / Plus Query: 553 gcacccttcatgttggatagagg 575 ||||||||||||||||||||||| Sbjct: 98764 gcacccttcatgttggatagagg 98786
>emb|BX640518.5| Zebrafish DNA sequence from clone DKEY-278M12 in linkage group 24, complete sequence Length = 215186 Score = 46.1 bits (23), Expect = 0.33 Identities = 29/31 (93%) Strand = Plus / Plus Query: 426 tgactatatgatgcacaatgcagcctttgag 456 ||||||||| ||||| ||||||||||||||| Sbjct: 162491 tgactatattatgcataatgcagcctttgag 162521
>gb|AC131803.3| Mus musculus BAC clone RP24-549I15 from chromosome 5, complete sequence Length = 168439 Score = 46.1 bits (23), Expect = 0.33 Identities = 23/23 (100%) Strand = Plus / Minus Query: 553 gcacccttcatgttggatagagg 575 ||||||||||||||||||||||| Sbjct: 109657 gcacccttcatgttggatagagg 109635
>gb|AC009895.4|ATAC009895 Arabidopsis thaliana chromosome III BAC T21P5 genomic sequence, complete sequence Length = 82289 Score = 44.1 bits (22), Expect = 1.3 Identities = 52/62 (83%) Strand = Plus / Minus Query: 601 agtgcagctggaaaggtgcccacacctggtcaggctctttactctgcttccaaacatgct 660 ||||| || |||||||| || ||||||| |||||| | || |||||||| ||||||||| Sbjct: 66161 agtgctgcaggaaaggtaccatcacctggacaggctatatattctgcttcaaaacatgct 66102 Query: 661 ct 662 || Sbjct: 66101 ct 66100 Score = 44.1 bits (22), Expect = 1.3 Identities = 52/62 (83%) Strand = Plus / Plus Query: 601 agtgcagctggaaaggtgcccacacctggtcaggctctttactctgcttccaaacatgct 660 ||||| || |||||||| || ||||||| |||||| | || |||||||| ||||||||| Sbjct: 75469 agtgctgcaggaaaggtaccatcacctggacaggctatatattctgcttcaaaacatgct 75528 Query: 661 ct 662 || Sbjct: 75529 ct 75530
>emb|AJ417687.1|GGR417687 Gaeumannomyces graminis var. tritici lac3 gene for laccase, exons 1-7 Length = 3703 Score = 44.1 bits (22), Expect = 1.3 Identities = 28/30 (93%) Strand = Plus / Minus Query: 924 tggatgctggcttatggataaggttggtgc 953 ||||||||||||| ||||||||| |||||| Sbjct: 2561 tggatgctggcttctggataaggctggtgc 2532
>gb|AC102614.11| Mus musculus chromosome 8, clone RP23-421L10, complete sequence Length = 197194 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1315 ttttagaactcaaatacaaat 1335 ||||||||||||||||||||| Sbjct: 129395 ttttagaactcaaatacaaat 129415
>gb|AC119806.6| Mus musculus chromosome 7, clone RP23-211A9, complete sequence Length = 215147 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1034 gatgaagttgctcattacacc 1054 ||||||||||||||||||||| Sbjct: 131059 gatgaagttgctcattacacc 131039
>gb|AC108062.3| Homo sapiens BAC clone RP11-420A23 from 4, complete sequence Length = 169597 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1153 taaataactgaccagttctct 1173 ||||||||||||||||||||| Sbjct: 149614 taaataactgaccagttctct 149594
>gb|AC026116.26| Homo sapiens 12 BAC RP11-1022B3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177267 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 353 atttatcatctgatgaaaaat 373 ||||||||||||||||||||| Sbjct: 135294 atttatcatctgatgaaaaat 135314
>dbj|AP004954.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT21G09, TM0131, complete sequence Length = 93645 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 638 tttactctgcttccaaacatg 658 ||||||||||||||||||||| Sbjct: 18990 tttactctgcttccaaacatg 18970
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 5.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 gtcgtgcggccggccgcggcg 161 ||||||||||||||||||||| Sbjct: 447884 gtcgtgcggccggccgcggcg 447904 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 235,694,628 Number of extensions: 12853627 Number of successful extensions: 245787 Number of sequences better than 10.0: 27 Number of HSP's gapped: 245778 Number of HSP's successfully gapped: 46 Length of query: 1372 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1349 Effective length of database: 18,503,978,556 Effective search space: 24961867072044 Effective search space used: 24961867072044 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
