| Clone Name | FLbaf85o15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_654336.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1824.2), mRNA Length = 1761 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 tatctaccccgcaatacctag 395 ||||||||||||||||||||| Sbjct: 1152 tatctaccccgcaatacctag 1172
>gb|AC121604.3| Mus musculus BAC clone RP23-312E2 from chromosome 8, complete sequence Length = 209383 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 caggaagaagcaaaggaggga 115 ||||||||||||||||||||| Sbjct: 119520 caggaagaagcaaaggaggga 119500
>gb|AC103768.2| Homo sapiens chromosome 18, clone RP11-108G18, complete sequence Length = 180473 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 tttatatgtttgcatactttt 490 ||||||||||||||||||||| Sbjct: 134799 tttatatgtttgcatactttt 134779
>gb|AC103774.2| Homo sapiens chromosome 18, clone RP11-177E16, complete sequence Length = 175384 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 tttatatgtttgcatactttt 490 ||||||||||||||||||||| Sbjct: 134428 tttatatgtttgcatactttt 134408
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 591 gaagtattatgttagatttac 611 ||||||||||||||||||||| Sbjct: 3997926 gaagtattatgttagatttac 3997946
>emb|AL591431.8| Human DNA sequence from clone RP11-1057F13 on chromosome Xq21.1-21.2 Contains the 5' end of a novel pseudogene, gene MGC26999 and a CpG island, complete sequence Length = 151017 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 ggtagacaggaagaagcaaag 109 ||||||||||||||||||||| Sbjct: 34453 ggtagacaggaagaagcaaag 34433
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tatcaaagaagtattatgtta 604 ||||||||||||||||||||| Sbjct: 2854291 tatcaaagaagtattatgtta 2854271
>dbj|AP005590.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0574F11 Length = 159891 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 591 gaagtattatgttagatttac 611 ||||||||||||||||||||| Sbjct: 129438 gaagtattatgttagatttac 129458
>dbj|AP000640.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-26D16, complete sequence Length = 156734 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 568 ggagtagatacacttatatca 588 ||||||||||||||||||||| Sbjct: 40144 ggagtagatacacttatatca 40124
>gb|AC140217.3| Mus musculus BAC clone RP23-279O5 from 8, complete sequence Length = 224205 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 caggaagaagcaaaggaggga 115 ||||||||||||||||||||| Sbjct: 214459 caggaagaagcaaaggaggga 214439
>emb|CU104656.1| Gorilla DNA sequence from clone CH255-201E9, complete sequence Length = 180659 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 ttatatgtttgcatactttt 490 |||||||||||||||||||| Sbjct: 62811 ttatatgtttgcatactttt 62792
>gb|AC186359.3| Gallus gallus BAC clone CH261-54F21 from chromosome z, complete sequence Length = 178689 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 atccaattccaatatctacc 382 |||||||||||||||||||| Sbjct: 57270 atccaattccaatatctacc 57251
>gb|AC079936.7| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBb0061I18, complete sequence Length = 143163 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ggccgcaccacaccaccccc 46 |||||||||||||||||||| Sbjct: 14929 ggccgcaccacaccaccccc 14910
>gb|AC109807.9| Mus musculus chromosome 1, clone RP23-433B11, complete sequence Length = 227679 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 aggaagaagcaaaggaggga 115 |||||||||||||||||||| Sbjct: 158796 aggaagaagcaaaggaggga 158815
>gb|AC163636.5| Mus musculus BAC clone RP24-499E13 from chromosome 1, complete sequence Length = 173781 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 gaaccttggaaaatttcaga 523 |||||||||||||||||||| Sbjct: 43666 gaaccttggaaaatttcaga 43685
>gb|AC073336.6| Homo sapiens BAC clone RP11-476H24 from 7, complete sequence Length = 166261 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 acaccaccccccggccagccgtcc 59 |||||||||||| ||||||||||| Sbjct: 68279 acaccacccccctgccagccgtcc 68256
>gb|AC101758.6| Mus musculus chromosome 1, clone RP24-75F14, complete sequence Length = 268826 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 aggaagaagcaaaggaggga 115 |||||||||||||||||||| Sbjct: 240247 aggaagaagcaaaggaggga 240266
>gb|AC122454.4| Mus musculus BAC clone RP24-263I14 from chromosome 17, complete sequence Length = 198341 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 cagaaatttgttactaagtt 539 |||||||||||||||||||| Sbjct: 93531 cagaaatttgttactaagtt 93512
>gb|AC091734.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0068A07, from Chromosome 10, complete sequence Length = 154505 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 ggccgcaccacaccaccccc 46 |||||||||||||||||||| Sbjct: 10671 ggccgcaccacaccaccccc 10690
>emb|Z81560.1|CEK02E2 Caenorhabditis elegans Cosmid K02E2, complete sequence Length = 37059 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 ttggaaaatttcagaaattt 528 |||||||||||||||||||| Sbjct: 25856 ttggaaaatttcagaaattt 25837
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 ggccgcaccacaccaccccc 46 |||||||||||||||||||| Sbjct: 12489246 ggccgcaccacaccaccccc 12489265
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 587 caaagaagtattatgttagattta 610 ||||||||||||||||||| |||| Sbjct: 9925532 caaagaagtattatgttagtttta 9925509
>emb|BX000357.7| Human DNA sequence from clone DAQB-256B5 on chromosome 6 Contains the GNL1 gene for guanine nucleotide binding protein-like 1, the PRR3 gene for proline-rich polypeptide 3, the ABCF1 gene for ATP-binding cassette, sub-family F (GCN20), member 1 and 2 CpG islands, complete sequence Length = 64172 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 ttatatgtttgcatactttt 490 |||||||||||||||||||| Sbjct: 31631 ttatatgtttgcatactttt 31612
>emb|BX248518.5| Human DNA sequence from clone DASS-249B18 on chromosome 6, complete sequence Length = 34551 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 ttatatgtttgcatactttt 490 |||||||||||||||||||| Sbjct: 27273 ttatatgtttgcatactttt 27254
>emb|AL662825.5| Human DNA sequence from clone XXbac-98J21 on chromosome 6 contains the GNL1 gene for guanine nucleotide binding protein-like 1, the gene for CAT56 protein, the ABCF1 gene for ATP-binding cassette, subfamily F, member 1, the PPP1R10 gene for protein phosphatase 1, regulatory subunit 10, the 5' end of the MRPS18B gene for mitochondrial ribosomal protein S18B and three CpG islands, complete sequence Length = 81768 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 ttatatgtttgcatactttt 490 |||||||||||||||||||| Sbjct: 23459 ttatatgtttgcatactttt 23440
>emb|AL662800.4| Human DNA sequence from clone XXbac-249D20 on chromosome 6 contains the GNL1 gene for guanine nucleotide binding protein-like 1, the gene for CAT56 protein, the ABCF1 gene for ATP-binding cassette, subfamily F, member 1, the PPP1R10 gene for protein phosphatase 1, regulatory subunit 10, the MRPS18B gene for mitochondrial ribosomal protein S18B, two novel proteins, a prothymosin alpha (PTMA) pseudogene and four CpG islands, complete sequence Length = 151228 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 ttatatgtttgcatactttt 490 |||||||||||||||||||| Sbjct: 66285 ttatatgtttgcatactttt 66266
>gb|AC117832.6| Homo sapiens chromosome 15, clone RP11-963M5, complete sequence Length = 171462 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 ttttatatgtttgcatactt 488 |||||||||||||||||||| Sbjct: 145199 ttttatatgtttgcatactt 145218
>gb|U78977.1|RSU78977 Rattus norvegicus putative ATPase mRNA, partial cds Length = 936 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 gactgcgccatccaccagaggtgg 146 |||||||||||||||| ||||||| Sbjct: 921 gactgcgccatccacctgaggtgg 898
>gb|AF011336.1|AF011336 Mus musculus putative E1-E2 ATPase mRNA, partial cds Length = 3217 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 gactgcgccatccaccagaggtgg 146 |||||||||||||||| ||||||| Sbjct: 3159 gactgcgccatccacctgaggtgg 3136
>gb|AC009432.7|AC009432 Homo sapiens chromosome 15, clone RP11-57P19, complete sequence Length = 199609 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 ttttatatgtttgcatactt 488 |||||||||||||||||||| Sbjct: 81788 ttttatatgtttgcatactt 81807
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region Length = 2229817 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 ttatatgtttgcatactttt 490 |||||||||||||||||||| Sbjct: 1376075 ttatatgtttgcatactttt 1376094
>emb|CR847863.2| Human DNA sequence from clone DAMC-346K1 on chromosome 6, complete sequence Length = 22044 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 ttatatgtttgcatactttt 490 |||||||||||||||||||| Sbjct: 10880 ttatatgtttgcatactttt 10861
>gb|AC020890.22| Homo sapiens 3 BAC RP11-79L9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152005 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 568 ggagtagatacacttatatcaaag 591 ||||||| |||||||||||||||| Sbjct: 40581 ggagtagctacacttatatcaaag 40604
>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region Length = 1750601 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 ttatatgtttgcatactttt 490 |||||||||||||||||||| Sbjct: 951362 ttatatgtttgcatactttt 951381
>emb|CR388372.6| Human DNA sequence from clone DADB-87H23 on chromosome 6, complete sequence Length = 70448 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 ttatatgtttgcatactttt 490 |||||||||||||||||||| Sbjct: 61280 ttatatgtttgcatactttt 61261
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0063H02 Length = 152326 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 587 caaagaagtattatgttagattta 610 ||||||||||||||||||| |||| Sbjct: 122167 caaagaagtattatgttagtttta 122144
>emb|BX510648.5| Zebrafish DNA sequence from clone CH211-155O9 in linkage group 5, complete sequence Length = 191453 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 583 atatcaaagaagtattatgttaga 606 |||||||||||||||| ||||||| Sbjct: 7731 atatcaaagaagtattttgttaga 7708
>emb|BX927220.8| Human DNA sequence from clone DAMA-199F12 on chromosome 6, complete sequence Length = 82724 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 ttatatgtttgcatactttt 490 |||||||||||||||||||| Sbjct: 54234 ttatatgtttgcatactttt 54215
>gb|BC084699.1| Rattus norvegicus similar to Potential phospholipid-transporting ATPase IIB, mRNA (cDNA clone IMAGE:7122922), partial cds Length = 1660 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 gactgcgccatccaccagaggtgg 146 |||||||||||||||| ||||||| Sbjct: 1405 gactgcgccatccacctgaggtgg 1382
>emb|AL669967.12| Mouse DNA sequence from clone RP23-216M21 on chromosome X, complete sequence Length = 219583 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 aggaagaagcaaaggaggga 115 |||||||||||||||||||| Sbjct: 8528 aggaagaagcaaaggaggga 8547
>emb|AL671532.13| Human DNA sequence from clone RP11-512A4 on chromosome 22, complete sequence Length = 211173 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 caccacaccaccccccggcc 51 |||||||||||||||||||| Sbjct: 8130 caccacaccaccccccggcc 8149
>gb|AY520825.1| Mus musculus ISP1 (Isp1) and ISP2 (Isp2) genes, complete cds Length = 20247 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 cagaaatttgttactaagtt 539 |||||||||||||||||||| Sbjct: 3318 cagaaatttgttactaagtt 3299
>gb|AC004209.1|AC004209 Homo sapiens clone UWGC:y55c025 from 6p21, complete sequence Length = 43600 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 ttatatgtttgcatactttt 490 |||||||||||||||||||| Sbjct: 1532 ttatatgtttgcatactttt 1551
>dbj|AB023052.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, clone:TS1B10, complete sequence Length = 28719 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 ttatatgtttgcatactttt 490 |||||||||||||||||||| Sbjct: 25303 ttatatgtttgcatactttt 25322
>emb|AL646048.22| Mouse DNA sequence from clone RP23-289C5 on chromosome X, complete sequence Length = 114787 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 agacaggaagaagcaaagga 111 |||||||||||||||||||| Sbjct: 48017 agacaggaagaagcaaagga 48036 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 96,892,186 Number of extensions: 5029359 Number of successful extensions: 102558 Number of sequences better than 10.0: 45 Number of HSP's gapped: 102558 Number of HSP's successfully gapped: 45 Length of query: 658 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 636 Effective length of database: 18,508,616,841 Effective search space: 11771480310876 Effective search space used: 11771480310876 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)