ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf85m22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK110935:Os07g0173300 32 0.47
2AK067184:Os04g0191800 29 0.70
3AJ428900:Os02g0551400 28 5.2
4AK119501:Os06g0611400 28 5.2
5AK068448:Os02g0551400 28 5.2
6AK110278: 28 6.8

>AK110935:Os07g0173300 |
          Length = 451
 Score = 31.6 bits (70), Expect = 0.47
 Identities = 18/45 (40%), Positives = 31/45 (68%)
 Frame = -3

Query: 333 RSKVSQLIGHSQDRRCILVSNSRHPNKSYNNKAPEQGTVNINTSA 199
           RSK ++++G + D + IL+ N  +  +S ++KAP+  TVN+ TSA
Sbjct: 276 RSKNTKVVGETSDAK-ILMKNKAN-RESGDDKAPKNCTVNLETSA 318



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>AK067184:Os04g0191800 |
          Length = 400

 Score = 28.9 bits (63), Expect(2) = 0.70
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
 Frame = +2

Query: 32  LISLRWQRFARSHTQLLGAHRSAP------ACGFGDYLFVSETHPSKAGQRLGVSL-THP 190
           L+   W+R   +   LL  HR  P      AC + D +++ +      G+R G +   HP
Sbjct: 41  LVCRAWRRLTSTRDFLLAHHRHQPSLPLIAACDYADIMYLIDVLTLTLGRRRGAAARLHP 100

Query: 191 QSR 199
            +R
Sbjct: 101 VAR 103



 Score = 20.8 bits (42), Expect(2) = 0.70
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 199 STRIYVDCPLFRCFVIIGFIRMPRVGD 279
           +TR + D PL   F+ +G  +    GD
Sbjct: 136 TTRQFGDLPLISGFMFLGLYQHSPTGD 162



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>AJ428900:Os02g0551400 |
          Length = 665

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +2

Query: 527 LVP*HLTKERTGRANGSGHPLVAGVAP---SPDQAPKKKKK 640
           LVP H     TG  + S  P   G +P    P+  PKKKKK
Sbjct: 126 LVPGHRLTNGTGPVSSSKQPSHTGSSPDPLDPNGHPKKKKK 166



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>AK119501:Os06g0611400 |
          Length = 419

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 308 VTLKIEDASWSPTRGILINPIITKHLNRGQST*IRVLATAGV*AKLLIAVRPCL 147
           V +K+  ++ SP RG+ +  I  +++ RG +T  R    AG  A   +   PC+
Sbjct: 366 VAVKLSCSAASPCRGVELRDIDLRYVRRGVATVSRCANVAGGVAGGTLVPPPCI 419



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>AK068448:Os02g0551400 |
          Length = 719

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +2

Query: 527 LVP*HLTKERTGRANGSGHPLVAGVAP---SPDQAPKKKKK 640
           LVP H     TG  + S  P   G +P    P+  PKKKKK
Sbjct: 180 LVPGHRLTNGTGPVSSSKQPSHTGSSPDPLDPNGHPKKKKK 220



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>AK110278: |
          Length = 661

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 557 TGRANGSGHPLVAGVAPSPDQAPKKKKK 640
           TG  +GSG P      PSPDQ+P ++K+
Sbjct: 193 TGTGSGSGKPQRL---PSPDQSPPRRKR 217


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 20,947,721
Number of extensions: 513243
Number of successful extensions: 1086
Number of sequences better than 10.0: 6
Number of HSP's gapped: 1085
Number of HSP's successfully gapped: 7
Length of query: 213
Length of database: 15,399,855
Length adjustment: 96
Effective length of query: 117
Effective length of database: 11,555,919
Effective search space: 1352042523
Effective search space used: 1352042523
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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