ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf85m22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CT025531.9| Mouse DNA sequence from clone RP23-280C13 on chr... 44 0.61
2dbj|AP008242.1| Lotus japonicus genomic DNA, chromosome 4, clone... 44 0.61
3gb|AC157997.2| Mus musculus BAC clone RP24-129N18 from chromosom... 44 0.61
4gb|AC119158.10| Mus musculus chromosome 19, clone RP23-434C14, c... 42 2.4
5emb|BX323038.3| Zebrafish DNA sequence from clone DKEYP-57D7 in ... 42 2.4
6emb|BX004779.16| Zebrafish DNA sequence from clone CH211-14K19 i... 42 2.4
7ref|XM_001053406.1| PREDICTED: Rattus norvegicus CXXC finger 1 (... 40 9.5
8ref|XM_001053476.1| PREDICTED: Rattus norvegicus CXXC finger 1 (... 40 9.5
9ref|XM_001053540.1| PREDICTED: Rattus norvegicus CXXC finger 1 (... 40 9.5
10ref|XM_238016.4| PREDICTED: Rattus norvegicus CXXC finger 1 (PHD... 40 9.5
11emb|CR792438.14| Zebrafish DNA sequence from clone DKEY-20J1 in ... 40 9.5
12gb|AC124977.8| Mus musculus chromosome 7, clone RP24-89J20, comp... 40 9.5
13gb|BC030938.1| Mus musculus CXXC finger 1 (PHD domain), mRNA (cD... 40 9.5
14gb|AC147367.3| Mus musculus BAC clone RP24-424M5 from chromosome... 40 9.5
15gb|BC012261.1| Mus musculus CXXC finger 1 (PHD domain), mRNA (cD... 40 9.5
16gb|AC133186.4| Mus musculus BAC clone RP23-320D8 from chromosome... 40 9.5
17gb|AC153489.7| Mus musculus 10 BAC RP23-95A4 (Roswell Park Cance... 40 9.5
18gb|AC124360.5| Mus musculus BAC clone RP24-502M22 from chromosom... 40 9.5
19gb|AC132401.4| Mus musculus BAC clone RP23-404A8 from chromosome... 40 9.5
20gb|AY099096.1| Mus musculus CpG binding protein mRNA, complete cds 40 9.5
21gb|AY099351.1| Mus musculus CpG binding protein (Cgbp) gene, com... 40 9.5
22dbj|AK146688.1| Mus musculus 13 days embryo liver cDNA, RIKEN fu... 40 9.5
23ref|NM_028868.1| Mus musculus CXXC finger 1 (PHD domain) (Cxxc1)... 40 9.5
24dbj|AK083655.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 40 9.5
25dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
26gb|AC018868.4| Homo sapiens BAC clone RP11-83J16 from 15, comple... 40 9.5
27dbj|AP005817.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
28gb|AC108443.18| Mus musculus chromosome 7, clone RP23-13J9, comp... 40 9.5
29gb|BC087117.1| Rattus norvegicus CXXC finger 1 (PHD domain), mRN... 40 9.5
30gb|AC147053.3| Mus musculus BAC clone RP23-87B16 from 6, complet... 40 9.5
31gb|AC148332.3| Mus musculus BAC clone RP23-326L8 from 6, complet... 40 9.5
32gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, comple... 40 9.5 
>emb|CT025531.9| Mouse DNA sequence from clone RP23-280C13 on chromosome 9, complete
             sequence
          Length = 206038
 Score = 44.1 bits (22), Expect = 0.61
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 92    agatccgcccctgcctgtggttttggggattact 125
             ||||| || ||||| |||||||||||||||||||
Sbjct: 80507 agatcggctcctgcgtgtggttttggggattact 80540
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>dbj|AP008242.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT22D23, TM0409,
             complete sequence
          Length = 93754

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 242   ttattataggatttattaggat 263
             ||||||||||||||||||||||
Sbjct: 87840 ttattataggatttattaggat 87861
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>gb|AC157997.2| Mus musculus BAC clone RP24-129N18 from chromosome 9, complete sequence
          Length = 178445

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 92    agatccgcccctgcctgtggttttggggattact 125
             ||||| || ||||| |||||||||||||||||||
Sbjct: 89587 agatcggctcctgcgtgtggttttggggattact 89620
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>gb|AC119158.10| Mus musculus chromosome 19, clone RP23-434C14, complete sequence
          Length = 209459

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 433   gggcctttcatgttagtcaac 453
             |||||||||||||||||||||
Sbjct: 48075 gggcctttcatgttagtcaac 48095
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>emb|BX323038.3| Zebrafish DNA sequence from clone DKEYP-57D7 in linkage group 1,
             complete sequence
          Length = 87548

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 238   tttgttattataggatttatt 258
             |||||||||||||||||||||
Sbjct: 86955 tttgttattataggatttatt 86935
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>emb|BX004779.16| Zebrafish DNA sequence from clone CH211-14K19 in linkage group 1,
            complete sequence
          Length = 196036

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 238  tttgttattataggatttatt 258
            |||||||||||||||||||||
Sbjct: 1407 tttgttattataggatttatt 1387
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>ref|XM_001053406.1| PREDICTED: Rattus norvegicus CXXC finger 1 (PHD domain), transcript
            variant 1 (Cxxc1), mRNA
          Length = 2765

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 395  ccttcaggaaatggagcgca 414
            ||||||||||||||||||||
Sbjct: 1563 ccttcaggaaatggagcgca 1582
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>ref|XM_001053476.1| PREDICTED: Rattus norvegicus CXXC finger 1 (PHD domain), transcript
            variant 2 (Cxxc1), mRNA
          Length = 2559

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 395  ccttcaggaaatggagcgca 414
            ||||||||||||||||||||
Sbjct: 1563 ccttcaggaaatggagcgca 1582
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>ref|XM_001053540.1| PREDICTED: Rattus norvegicus CXXC finger 1 (PHD domain), transcript
            variant 3 (Cxxc1), mRNA
          Length = 2494

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 395  ccttcaggaaatggagcgca 414
            ||||||||||||||||||||
Sbjct: 1575 ccttcaggaaatggagcgca 1594
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>ref|XM_238016.4| PREDICTED: Rattus norvegicus CXXC finger 1 (PHD domain) (Cxxc1), mRNA
          Length = 2585

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 395  ccttcaggaaatggagcgca 414
            ||||||||||||||||||||
Sbjct: 1666 ccttcaggaaatggagcgca 1685
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>emb|CR792438.14| Zebrafish DNA sequence from clone DKEY-20J1 in linkage group 3,
           complete sequence
          Length = 135329

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 538 acacttaacaaaagagagaa 557
           ||||||||||||||||||||
Sbjct: 43  acacttaacaaaagagagaa 62
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>gb|AC124977.8| Mus musculus chromosome 7, clone RP24-89J20, complete sequence
          Length = 239915

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 276   agaccaagatgcatcttctatcttgaga 303
             |||| |||||||| ||||||||||||||
Sbjct: 90663 agactaagatgcaacttctatcttgaga 90690
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>gb|BC030938.1| Mus musculus CXXC finger 1 (PHD domain), mRNA (cDNA clone MGC:32130
            IMAGE:3980339), complete cds
          Length = 2387

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 395  ccttcaggaaatggagcgca 414
            ||||||||||||||||||||
Sbjct: 1441 ccttcaggaaatggagcgca 1460
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>gb|AC147367.3| Mus musculus BAC clone RP24-424M5 from chromosome 18, complete sequence
          Length = 175316

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   ccttcaggaaatggagcgca 414
             ||||||||||||||||||||
Sbjct: 82475 ccttcaggaaatggagcgca 82456
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>gb|BC012261.1| Mus musculus CXXC finger 1 (PHD domain), mRNA (cDNA clone
            IMAGE:3501507), partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 395  ccttcaggaaatggagcgca 414
            ||||||||||||||||||||
Sbjct: 1152 ccttcaggaaatggagcgca 1171
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>gb|AC133186.4| Mus musculus BAC clone RP23-320D8 from chromosome 18, complete sequence
          Length = 209380

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 395    ccttcaggaaatggagcgca 414
              ||||||||||||||||||||
Sbjct: 170072 ccttcaggaaatggagcgca 170091
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>gb|AC153489.7| Mus musculus 10 BAC RP23-95A4 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 209653

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 523  acttcttgttccatgacact 542
            ||||||||||||||||||||
Sbjct: 4690 acttcttgttccatgacact 4709
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>gb|AC124360.5| Mus musculus BAC clone RP24-502M22 from chromosome 10, complete sequence
          Length = 184346

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 523    acttcttgttccatgacact 542
              ||||||||||||||||||||
Sbjct: 142762 acttcttgttccatgacact 142781
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>gb|AC132401.4| Mus musculus BAC clone RP23-404A8 from chromosome 3, complete sequence
          Length = 200657

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   tatataaacatggccttggt 384
             ||||||||||||||||||||
Sbjct: 96645 tatataaacatggccttggt 96664
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>gb|AY099096.1| Mus musculus CpG binding protein mRNA, complete cds
          Length = 2509

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 395  ccttcaggaaatggagcgca 414
            ||||||||||||||||||||
Sbjct: 1581 ccttcaggaaatggagcgca 1600
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>gb|AY099351.1| Mus musculus CpG binding protein (Cgbp) gene, complete cds
          Length = 17125

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   ccttcaggaaatggagcgca 414
             ||||||||||||||||||||
Sbjct: 12195 ccttcaggaaatggagcgca 12214
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>dbj|AK146688.1| Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched
            library, clone:I920041O05 product:CXXC finger 1 (PHD
            domain), full insert sequence
          Length = 2621

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 395  ccttcaggaaatggagcgca 414
            ||||||||||||||||||||
Sbjct: 1693 ccttcaggaaatggagcgca 1712
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>ref|NM_028868.1| Mus musculus CXXC finger 1 (PHD domain) (Cxxc1), mRNA
 dbj|AK010337.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
            clone:2410002I16 product:CpG binding protein (containing
            PHD and CXXC, zinc finger domains), full insert sequence
          Length = 2538

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 395  ccttcaggaaatggagcgca 414
            ||||||||||||||||||||
Sbjct: 1610 ccttcaggaaatggagcgca 1629
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>dbj|AK083655.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:D030060C24 product:CpG binding
            protein, full insert sequence
          Length = 2543

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 395  ccttcaggaaatggagcgca 414
            ||||||||||||||||||||
Sbjct: 1614 ccttcaggaaatggagcgca 1633
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 173      gtttcgctcacacacccgcagtcg 196
                |||||| |||||||||||||||||
Sbjct: 16826539 gtttcggtcacacacccgcagtcg 16826516
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>gb|AC018868.4| Homo sapiens BAC clone RP11-83J16 from 15, complete sequence
          Length = 162100

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 59     gctagatcccacactcaattgctg 82
              ||||||| ||||||||||||||||
Sbjct: 126332 gctagattccacactcaattgctg 126309
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>dbj|AP005817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1118_F01
          Length = 119248

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 173   gtttcgctcacacacccgcagtcg 196
             |||||| |||||||||||||||||
Sbjct: 39904 gtttcggtcacacacccgcagtcg 39881
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>gb|AC108443.18| Mus musculus chromosome 7, clone RP23-13J9, complete sequence
          Length = 198138

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 276  agaccaagatgcatcttctatcttgaga 303
            |||| |||||||| ||||||||||||||
Sbjct: 9660 agactaagatgcaacttctatcttgaga 9687
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>gb|BC087117.1| Rattus norvegicus CXXC finger 1 (PHD domain), mRNA (cDNA clone
            IMAGE:7193929)
          Length = 2767

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 395  ccttcaggaaatggagcgca 414
            ||||||||||||||||||||
Sbjct: 1634 ccttcaggaaatggagcgca 1653
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>gb|AC147053.3| Mus musculus BAC clone RP23-87B16 from 6, complete sequence
          Length = 218532

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 364    atatataaacatggccttgg 383
              ||||||||||||||||||||
Sbjct: 142950 atatataaacatggccttgg 142969
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>gb|AC148332.3| Mus musculus BAC clone RP23-326L8 from 6, complete sequence
          Length = 229988

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 364    atatataaacatggccttgg 383
              ||||||||||||||||||||
Sbjct: 109032 atatataaacatggccttgg 109013
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>gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, complete sequence
          Length = 215490

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 364   atatataaacatggccttgg 383
             ||||||||||||||||||||
Sbjct: 77183 atatataaacatggccttgg 77202


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 107,947,503
Number of extensions: 5650466
Number of successful extensions: 94547
Number of sequences better than 10.0: 32
Number of HSP's gapped: 94547
Number of HSP's successfully gapped: 32
Length of query: 641
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 619
Effective length of database: 18,508,616,841
Effective search space: 11456833824579
Effective search space used: 11456833824579
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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