Clone Information

BLAST Search Result

Clone Name	FLbaf88e12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	O15105:SMAD7_HUMAN Mothers against decapentaplegic homolog 7 - H...	32	2.1
2	P04882:VGLG_VSNJO Glycoprotein G precursor - Vesicular stomatiti...	31	4.6
3	Q9P227:RHG23_HUMAN Rho GTPase-activating protein 23 - Homo sapie...	30	6.0

>O15105:SMAD7_HUMAN Mothers against decapentaplegic homolog 7 - Homo sapiens (Human)|
          Length = 426
 Score = 32.0 bits (71), Expect = 2.1
 Identities = 19/53 (35%), Positives = 21/53 (39%)
 Frame = +3

Query: 309 GGRGSKFTWEGVDGYTDEDLDLVASKGPGTDACASGKNKS*GEGDALPHPPVA 467
           GG G +   EG    TD         GPG   C  GK     +G   PHPP A
Sbjct: 31  GGGGGELRGEGA---TDSRAHGAGGGGPGRAGCCLGKAVRGAKGHHHPHPPAA 80

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>P04882:VGLG_VSNJO Glycoprotein G precursor - Vesicular stomatitis New Jersey virus|
           (strain Ogden subtype Concan) (VSNJV)
          Length = 517

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 173 CKKQDQDLASNEDGWMETSSMRCTSASVCSDLISLDGGFIYGVSDEIS 30
           CK Q  +   N   W  +S       SVCS L +L GG  +  S+EI+
Sbjct: 169 CKGQICETVHNSTKWFTSSD----GESVCSQLFTLVGGIFFSDSEEIT 212

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>Q9P227:RHG23_HUMAN Rho GTPase-activating protein 23 - Homo sapiens (Human)|
          Length = 1491

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 400 TLAPPARTSPRERVMPCPTRPSPSD 474
           T APPAR S R  ++P PT   PSD
Sbjct: 194 TYAPPARASTRATMVPEPTSALPSD 218


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 101,609,950
Number of extensions: 2012955
Number of successful extensions: 5270
Number of sequences better than 10.0: 3
Number of HSP's gapped: 5267
Number of HSP's successfully gapped: 3
Length of query: 219
Length of database: 100,686,439
Length adjustment: 109
Effective length of query: 110
Effective length of database: 70,788,284
Effective search space: 7786711240
Effective search space used: 7786711240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result