ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf85h08 |
|---|---|
| Clone Library Name | barley_pub |
>P53331:REXO1_YEAST RNA exonuclease 1 - Saccharomyces cerevisiae (Baker's yeast)| Length = 553 Score = 176 bits (447), Expect = 2e-43 Identities = 133/480 (27%), Positives = 241/480 (50%), Gaps = 14/480 (2%) Frame = +2 Query: 161 LNLQDVQGLVTWVI-GEGMPPSWVFVKNKPLITKVVLLYVPGLDAALYMSQSRLLSSLKE 337 + ++DV+ + +++ E P W+ + N+ + K+++L++PGL + + + + + Sbjct: 65 IGIKDVRDMTQYLLQAENNSPKWIDICNRSSLQKMIVLFIPGLQPDDFENGKNTFNEISD 124 Query: 338 LCGNPKPVLASSCIPDERHTIDALLTCRVKRKRQSQTSNQSNESDGG--KLSSLADLKDI 511 N K + I HT + + + S ++ + G K+ + LK++ Sbjct: 125 --DNFKYIPGE--IASTFHTFPVM----APGSKMTLFSPYNSFINVGLSKMEKINKLKEL 176 Query: 512 P----FSVKYYTLSKKDLEDNGYPLSL------PGFVPTVAAPSGSSPYEILGLDCEMCV 661 ++ LS++ L N YPL +V TV G S I LDCEMC+ Sbjct: 177 QKKKKITINDLVLSEQQLVANDYPLDSGDTNFDTDWVQTVDFTHGGS--HIFALDCEMCL 234 Query: 662 TAAGFELTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEMLS-DVTTTLQEIQEE 838 + G LTR++LV+ EVI ++LVKP PI DY TR+SGIT E L+ TL+E+Q++ Sbjct: 235 SEQGLVLTRISLVNFDNEVIYEELVKPDVPIVDYLTRYSGITEEKLTVGAKKTLREVQKD 294 Query: 839 FVGLVYKETILVGHSLENDLLALRISHDLVIDTAVLYKYNRGPRCKIALRVLANKYLSRV 1018 + ++ + IL+GHSL+NDL +++ H LV+DTA++Y + G K +L+ L+ +L++ Sbjct: 295 LLKIISRSDILIGHSLQNDLKVMKLKHPLVVDTAIIYHHKAGDPFKPSLKYLSETFLNKS 354 Query: 1019 IQNTGSGHDSVEDARAALDLAFLKIKYGPDFGSPPSFSRRKLASILHECGKRSSLIDEVF 1198 IQN HDSVEDARA L+L LKI G FG + L + LH ++ L++++ Sbjct: 355 IQN--GEHDSVEDARACLELTKLKILNGLAFGI--GINTENLFTKLHRFEVKTVLLNDMI 410 Query: 1199 VLDRYSDASSNSIAVFSDDNALSRSMKEVKNDKISFVWTQFSGLISYLRKRAEDPVKLKS 1378 + + ++D++ + ++ V++D+ WT ++ + VKL Sbjct: 411 IKNH------------TEDDSKGQLIRCVEDDE---TWT-------HIHENLNKDVKL-- 446 Query: 1379 CVAEAIALKTCDRKTARKRAKQICPELKGILSELDKKIRKLHDTLPENAMFIICTGHGDT 1558 V L+ + R + + +L ++ + + +L++ M +I +G GDT Sbjct: 447 IVGRIKNLERSRNYNKKPRKETPSFDASMVLHDIGQHLTQLYENATPGTMILIMSGTGDT 506
>Q8IX06:GOR_HUMAN Exonuclease GOR - Homo sapiens (Human)| Length = 318 Score = 158 bits (399), Expect = 9e-38 Identities = 93/215 (43%), Positives = 129/215 (60%), Gaps = 1/215 (0%) Frame = +2 Query: 455 QSNESDGGKLSSLADLKDIPFSVKYYTLSKKDLEDNGYPLSLPGFVPTVAAPSGSSPYE- 631 +S++ GG++S P SV ++K+ + D G SL GFV T Y Sbjct: 86 RSSQVAGGRVSQYTCCAAAPGSVGCQ-VAKQHVRD-GRKESLDGFVETFKKELSRDAYPG 143 Query: 632 ILGLDCEMCVTAAGFELTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEMLSDVT 811 I LDCEMC T G ELTRVT+VD V+ D VKP N I DYNTRFSG+T ++ + Sbjct: 144 IYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKTS 203 Query: 812 TTLQEIQEEFVGLVYKETILVGHSLENDLLALRISHDLVIDTAVLYKYNRGPRCKIALRV 991 TL ++Q + +TIL+GHSLE+DLLAL++ H V+DTAVL+ + G K +LR Sbjct: 204 ITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKRSLRN 263 Query: 992 LANKYLSRVIQNTGSGHDSVEDARAALDLAFLKIK 1096 LA YL+++IQ++ +GH+S EDA A L L K++ Sbjct: 264 LAADYLAQIIQDSQNGHNSSEDANACLQLVMWKVR 298
>P48778:GOR_PANTR Exonuclease GOR - Pan troglodytes (Chimpanzee)| Length = 427 Score = 156 bits (395), Expect = 3e-37 Identities = 93/215 (43%), Positives = 127/215 (59%), Gaps = 1/215 (0%) Frame = +2 Query: 455 QSNESDGGKLSSLADLKDIPFSVKYYTLSKKDLEDNGYPLSLPGFVPTVAAPSGSSPYE- 631 +S++ GG++S P SV ++K+ + D G SL GFV T Y Sbjct: 86 RSSQVAGGRVSQYTCCAAAPGSVGCQ-VAKQHVRD-GRKDSLDGFVETFKKELSRDAYPG 143 Query: 632 ILGLDCEMCVTAAGFELTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEMLSDVT 811 I LDCEMC T G ELTRVT+VD V+ D VKP N I DYNTRFSG+T ++ + Sbjct: 144 IYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKTS 203 Query: 812 TTLQEIQEEFVGLVYKETILVGHSLENDLLALRISHDLVIDTAVLYKYNRGPRCKIALRV 991 TL ++Q + +TIL+GHSLE+DLLAL++ H V+DTAVL+ + G K +LR Sbjct: 204 ITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVLDTAVLFPHYLGFPYKRSLRN 263 Query: 992 LANKYLSRVIQNTGSGHDSVEDARAALDLAFLKIK 1096 LA YL ++IQ++ GH+S EDA A L L K++ Sbjct: 264 LAADYLGQIIQDSQDGHNSSEDANACLQLVMWKVR 298
>Q8N1G1:REXO1_HUMAN RNA exonuclease 1 homolog - Homo sapiens (Human)| Length = 1221 Score = 150 bits (380), Expect = 1e-35 Identities = 84/188 (44%), Positives = 116/188 (61%), Gaps = 1/188 (0%) Frame = +2 Query: 536 LSKKDLEDNGYPLSLPGFVPTVAAP-SGSSPYEILGLDCEMCVTAAGFELTRVTLVDIKG 712 ++K+ ++D G L GFV T SG + I LDCEM T G ELTRVT+VD Sbjct: 1028 VAKQHVQD-GRKERLEGFVKTFEKELSGDTHPGIYALDCEMSYTTYGLELTRVTVVDTDV 1086 Query: 713 EVILDKLVKPTNPITDYNTRFSGITAEMLSDVTTTLQEIQEEFVGLVYKETILVGHSLEN 892 V+ D VKP N I DYNTRFSG+T L+D + TL+++Q + + +TIL+GHSLE+ Sbjct: 1087 HVVYDTFVKPDNEIVDYNTRFSGVTEADLADTSVTLRDVQAVLLSMFSADTILIGHSLES 1146 Query: 893 DLLALRISHDLVIDTAVLYKYNRGPRCKIALRVLANKYLSRVIQNTGSGHDSVEDARAAL 1072 DLLAL++ H V+DT+VL+ + G K +LR L YL ++IQ+ GH S EDA A + Sbjct: 1147 DLLALKVIHSTVVDTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDAGACM 1206 Query: 1073 DLAFLKIK 1096 L K++ Sbjct: 1207 HLVIWKVR 1214
>Q2T9U5:REXON_BOVIN Putative RNA exonuclease NEF-sp - Bos taurus (Bovine)| Length = 783 Score = 149 bits (375), Expect = 5e-35 Identities = 87/195 (44%), Positives = 122/195 (62%), Gaps = 5/195 (2%) Frame = +2 Query: 536 LSKKDLEDNGYPLS----LPGFVPTVAAPSGSSPYEILGLDCEMCVTAAGFELTRVTLVD 703 L+K++++ +PL FVPT S + + GLDCEMC+T+ G ELTR++LV Sbjct: 194 LTKEEMKTYHFPLQGFLDCENFVPTKCNGSVTDNSPLFGLDCEMCLTSKGRELTRISLVA 253 Query: 704 IKGEVILDKLVKPTNPITDYNTRFSGITAEMLSDVTTTLQEIQEEFVGLVYKETILVGHS 883 G ++D+LVKP N I DY T FSGIT ++L+ VTT L+++Q L+ + +LVGHS Sbjct: 254 EGGGCVMDELVKPDNKIVDYLTSFSGITKKILNPVTTKLKDVQRRLKILLPPDAVLVGHS 313 Query: 884 LENDLLALRISHDLVIDTAVLYKYNRGPRCKIALRVLANKYLSRVIQNTGS-GHDSVEDA 1060 L+ DL AL++ H VIDT++LY +G R K L+ LA L + IQ GHD+ EDA Sbjct: 314 LDLDLRALKMIHPYVIDTSLLYVREQGRRFK--LKFLAKAILGKDIQCPDRLGHDATEDA 371 Query: 1061 RAALDLAFLKIKYGP 1105 R L+LA +KYGP Sbjct: 372 RTTLELARYFLKYGP 386
>Q7TT28:REXO1_MOUSE RNA exonuclease 1 homolog - Mus musculus (Mouse)| Length = 1213 Score = 147 bits (371), Expect = 2e-34 Identities = 81/188 (43%), Positives = 115/188 (61%), Gaps = 1/188 (0%) Frame = +2 Query: 536 LSKKDLEDNGYPLSLPGFVPTVAAPSGSSPYE-ILGLDCEMCVTAAGFELTRVTLVDIKG 712 ++K+ ++D G +L GFV T + + LDCEM T G ELTRVT+VD Sbjct: 1020 VAKQHVQD-GRKENLEGFVRTFQKELPEDAHAGVFALDCEMSYTTYGLELTRVTVVDTDM 1078 Query: 713 EVILDKLVKPTNPITDYNTRFSGITAEMLSDVTTTLQEIQEEFVGLVYKETILVGHSLEN 892 +V+ D VKP N + DYNTRFSG+T L D + TL+++Q + + +TIL+GHSLE+ Sbjct: 1079 QVVYDTFVKPDNEVVDYNTRFSGVTEADLVDTSITLRDVQAVLLSMFSADTILIGHSLES 1138 Query: 893 DLLALRISHDLVIDTAVLYKYNRGPRCKIALRVLANKYLSRVIQNTGSGHDSVEDARAAL 1072 DLLAL++ H V+DT+VL+ + G K +LR L YL ++IQ+ GH S EDA A + Sbjct: 1139 DLLALKVIHGTVVDTSVLFPHRLGLPYKRSLRNLMADYLRQIIQDNVDGHSSSEDASACM 1198 Query: 1073 DLAFLKIK 1096 L KI+ Sbjct: 1199 HLVIWKIR 1206
>Q4R9F7:REXON_MACFA Putative RNA exonuclease NEF-sp - Macaca fascicularis (Crab eating| macaque) (Cynomolgus monkey) Length = 772 Score = 143 bits (360), Expect = 3e-33 Identities = 85/195 (43%), Positives = 121/195 (62%), Gaps = 5/195 (2%) Frame = +2 Query: 536 LSKKDLEDNGYPLS----LPGFVPTVAAPSGSSPYEILGLDCEMCVTAAGFELTRVTLVD 703 L+K+++ +PL F+ T S + + GLDCEMC+T+ G ELTR++LV Sbjct: 192 LTKEEMRTFHFPLQGFPECENFLLTKCNGSIADNSPLFGLDCEMCLTSKGRELTRISLVA 251 Query: 704 IKGEVILDKLVKPTNPITDYNTRFSGITAEMLSDVTTTLQEIQEEFVGLVYKETILVGHS 883 G ++D+LVKP N I DY T FSGIT ++L+ VTT L+++Q + L+ + +LVGHS Sbjct: 252 EGGCCVMDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKALLPPDAVLVGHS 311 Query: 884 LENDLLALRISHDLVIDTAVLYKYNRGPRCKIALRVLANKYLSRVIQNTGS-GHDSVEDA 1060 L+ DL AL++ H VIDT++LY +G R K L+ LA L + IQ GHD+ EDA Sbjct: 312 LDLDLRALKMIHPYVIDTSLLYVREQGRRFK--LKFLAKAILGKDIQCPDRLGHDATEDA 369 Query: 1061 RAALDLAFLKIKYGP 1105 R L+LA +KYGP Sbjct: 370 RIILELAQYFLKYGP 384
>Q96IC2:REXON_HUMAN Putative RNA exonuclease NEF-sp - Homo sapiens (Human)| Length = 774 Score = 142 bits (357), Expect = 7e-33 Identities = 89/217 (41%), Positives = 129/217 (59%), Gaps = 14/217 (6%) Frame = +2 Query: 497 DLKDIPFSVKYYT---------LSKKDLEDNGYPLS----LPGFVPTVAAPSGSSPYEIL 637 +L+D P KY + L+K+++ +PL F+ T S + + Sbjct: 170 NLQDDPIIQKYGSKKVGLTRCLLTKEEMRTFHFPLQGFPDCENFLLTKCNGSIADNSPLF 229 Query: 638 GLDCEMCVTAAGFELTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEMLSDVTTT 817 GLDCEMC+T+ G ELTR++LV G ++D+LVKP N I DY T FSGIT ++L+ VTT Sbjct: 230 GLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVTTK 289 Query: 818 LQEIQEEFVGLVYKETILVGHSLENDLLALRISHDLVIDTAVLYKYNRGPRCKIALRVLA 997 L+++Q + L+ + +LVGHSL+ DL AL++ H VIDT++LY +G R K L+ LA Sbjct: 290 LKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFK--LKFLA 347 Query: 998 NKYLSRVIQNTGS-GHDSVEDARAALDLAFLKIKYGP 1105 L + IQ GHD+ EDAR L+LA +K+GP Sbjct: 348 KVILGKDIQCPDRLGHDATEDARTILELARYFLKHGP 384
>Q6CFE7:REXO3_YARLI RNA exonuclease 3 - Yarrowia lipolytica (Candida lipolytica)| Length = 757 Score = 137 bits (346), Expect = 1e-31 Identities = 80/170 (47%), Positives = 107/170 (62%), Gaps = 8/170 (4%) Frame = +2 Query: 611 SGSSPYEILGLDCEMCVTAAGFELTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSG--- 781 +GS ++ +DCEM T+ G EL RVT +D G+ LD++V+PT I DYNTRFSG Sbjct: 590 AGSLQTSVVAVDCEMLYTSLGMELCRVTCIDYHGKKTLDRVVRPTGRILDYNTRFSGISD 649 Query: 782 -----ITAEMLSDVTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISHDLVIDTAVL 946 IT + + +E + L+ K+TILVGH LENDL+A+R+ HD +IDT++L Sbjct: 650 INEPIITESGEKGDSISFEEAHRLILKLINKQTILVGHGLENDLIAMRLIHDRIIDTSIL 709 Query: 947 YKYNRGPRCKIALRVLANKYLSRVIQNTGSGHDSVEDARAALDLAFLKIK 1096 Y + PR K AL+ LA KYL R IQ TG HDS+EDA AALD+ +K Sbjct: 710 YP-DFNPRYKTALKTLALKYLKRTIQ-TGE-HDSMEDALAALDVVKCHLK 756
>A1A5R7:REXON_RAT Putative RNA exonuclease NEF-sp - Rattus norvegicus (Rat)| Length = 754 Score = 135 bits (341), Expect = 5e-31 Identities = 106/322 (32%), Positives = 159/322 (49%), Gaps = 26/322 (8%) Frame = +2 Query: 218 PSWVFVKNKPLITKVVLLYVPGLDAA----LYMSQSRLLSSLKELCGNPKPVLASSCIPD 385 PSW + ++ + VV+ + G+ Y+ L + + P P SS + D Sbjct: 76 PSWCQLLHQKQLNNVVVFILKGMSQLHFYRFYLEFRFLRKTFRHKFSLPPPT--SSFLFD 133 Query: 386 ERHTIDALLTCRVKRKRQSQTSNQSNESDGGKLSSLADLKDIPFSVKY---------YTL 538 ++ + K+ + L S DL++ P KY L Sbjct: 134 -------IIGLQKKKSARGCPRTVEGPLISATLKSSIDLQNDPIIQKYGYKNVSLTRCLL 186 Query: 539 SKKDLEDNGYPLS------------LPGFVPTVAAPSGSSPYEILGLDCEMCVTAAGFEL 682 +K++++ +PL GF+ + SSP + GLDCE+C+T+ G EL Sbjct: 187 TKEEMKTFHFPLQGSPNCENFILLKYSGFI------TDSSP--LFGLDCEVCLTSMGKEL 238 Query: 683 TRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEMLSDVTTTLQEIQEEFVGLVYKE 862 TR++LV G ++D+LVKP I DY T FSGIT E+L+ VTT L+++Q+ L+ + Sbjct: 239 TRISLVAEGGYCLMDELVKPDFKILDYLTSFSGITKEILNPVTTKLKDVQKLLRELLPPD 298 Query: 863 TILVGHSLENDLLALRISHDLVIDTAVLYKYNRGPRCKIALRVLANKYLSRVIQNTGS-G 1039 +LVGH L+ DL L+I H VIDT++LY +G R K L LA L + IQ G Sbjct: 299 AVLVGHCLDLDLRVLKIIHPYVIDTSLLYIGKQGRRFK--LTFLAKVILGKDIQCPNKLG 356 Query: 1040 HDSVEDARAALDLAFLKIKYGP 1105 HD +EDAR AL+L +KYGP Sbjct: 357 HDGIEDARTALELVQYFLKYGP 378
>Q10124:PQE1_CAEEL Putative RNA exonuclease pqe-1 - Caenorhabditis elegans| Length = 1647 Score = 129 bits (323), Expect = 6e-29 Identities = 75/184 (40%), Positives = 106/184 (57%), Gaps = 4/184 (2%) Frame = +2 Query: 557 DNGYPLSLPGFVPT-VAAPSGSSPYEILGLDCEMCVTAAGFELTRVTLVDIKGEVILDKL 733 D + L FV T V P+ + LDCEM T AG L R+T+VD++ +LD Sbjct: 1452 DQLFKKELSTFVSTPVPVPNDQRSTRVYALDCEMVYTIAGPALARLTMVDMQRNRVLDVF 1511 Query: 734 VKPTNPITDYNTRFSGITAEMLSDVTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRI 913 VKP + D NT FSG+T E ++ TL+ ++ V +TIL+GHSLE+DL A+R+ Sbjct: 1512 VKPPTDVLDPNTEFSGLTMEQINSAPDTLKTCHQKLFKYVNADTILIGHSLESDLKAMRV 1571 Query: 914 SHDLVIDTAVLYKYNRGPRCKIALRVLANKYLSRVIQNTGS---GHDSVEDARAALDLAF 1084 H VIDTA+L++ R K+AL+VL+ K L + IQ GHDS+EDA +DL F Sbjct: 1572 VHKNVIDTAILFRSTRD--TKVALKVLSAKLLHKNIQGDNEDAIGHDSMEDALTCVDLIF 1629 Query: 1085 LKIK 1096 ++ Sbjct: 1630 YGLR 1633
>Q9P7H2:REXO3_SCHPO RNA exonuclease 3 - Schizosaccharomyces pombe (Fission yeast)| Length = 540 Score = 123 bits (308), Expect = 3e-27 Identities = 73/154 (47%), Positives = 95/154 (61%), Gaps = 2/154 (1%) Frame = +2 Query: 641 LDCEMCVTAAGFELTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGI--TAEMLSDVTT 814 LDCE+C T G EL R+T+V K +I+D +KP I NTRFSGI E+ S +T Sbjct: 385 LDCELCYTTNGMELARLTVV-AKESIIMDVFIKPKGKILSLNTRFSGIHDAKELESGITM 443 Query: 815 TLQEIQEEFVGLVYKETILVGHSLENDLLALRISHDLVIDTAVLYKYNRGPRCKIALRVL 994 I+ + +G+ K TIL+GH LENDL A+R+ H VIDTA+L+ + RGP + +L+ L Sbjct: 444 DQMYIKIKELGM-NKNTILIGHGLENDLNAMRLIHKRVIDTALLFTHARGPPFRYSLKYL 502 Query: 995 ANKYLSRVIQNTGSGHDSVEDARAALDLAFLKIK 1096 KYL IQ S HDS EDA +AL L F K K Sbjct: 503 TKKYLGTTIQT--STHDSEEDAVSALQLVFYKTK 534
>Q5AL29:REXO3_CANAL RNA exonuclease 3 - Candida albicans (Yeast)| Length = 404 Score = 120 bits (300), Expect = 3e-26 Identities = 70/165 (42%), Positives = 105/165 (63%), Gaps = 3/165 (1%) Frame = +2 Query: 611 SGSSPYEILGLDCEMCVTAAGFELTRVTLVD-IKGEVILDKLVKPTNPITDYNTRFSGIT 787 S S +LG+DCEM T GFEL R+T +D + +LD +KP I D+NTR+SGI Sbjct: 234 STKSKSRVLGIDCEMGFTTKGFELMRITAIDYFTSKTVLDIFIKPIGEIVDFNTRYSGI- 292 Query: 788 AEMLSDVTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISHDLVIDTAVLY--KYNR 961 L+D + ++ E+ ++ ETIL+GH LEND+ A+R+ H+ +IDT++L+ K+ Sbjct: 293 -HELTDDFLSWEQSMEKLGEIMDSETILIGHGLENDMNAMRLIHENIIDTSILFPNKWKT 351 Query: 962 GPRCKIALRVLANKYLSRVIQNTGSGHDSVEDARAALDLAFLKIK 1096 GP + +L+ LA ++LSR IQ TG HDS ED+ AA+D+ +K Sbjct: 352 GPTRRWSLKDLAFEFLSRRIQ-TGE-HDSCEDSIAAIDIVKYFVK 394
>Q6CJB5:REXO3_KLULA RNA exonuclease 3 - Kluyveromyces lactis (Yeast) (Candida sphaerica)| Length = 478 Score = 117 bits (293), Expect = 2e-25 Identities = 68/157 (43%), Positives = 100/157 (63%), Gaps = 3/157 (1%) Frame = +2 Query: 632 ILGLDCEMCVTAAGFELTRVTLVDI-KGEVILDKLVKPTNPITDYNTRFSGITAEMLSDV 808 +L LDCEM T+ G+E+ R+T+VD EV+ DK++KP I D N++FSGI + D Sbjct: 320 VLALDCEMAFTSKGYEMIRITIVDFWSSEVVYDKVIKPLGEIIDLNSKFSGI--HHIDDT 377 Query: 809 TTTLQEIQEEFV--GLVYKETILVGHSLENDLLALRISHDLVIDTAVLYKYNRGPRCKIA 982 T+ E ++ ++ ++ + +IL+GH L+NDL +RI HD VIDTAVLY + K + Sbjct: 378 APTIHEAEKCYICPSMINQNSILIGHGLDNDLRVMRIVHDKVIDTAVLYP---AGKYKSS 434 Query: 983 LRVLANKYLSRVIQNTGSGHDSVEDARAALDLAFLKI 1093 L+ L+ + LSR IQ G HDS EDA AA+D+ K+ Sbjct: 435 LKNLSFEILSRRIQ--GGEHDSSEDAIAAMDVIKKKL 469
>Q750A5:REXO3_ASHGO RNA exonuclease 3 - Ashbya gossypii (Yeast) (Eremothecium gossypii)| Length = 382 Score = 113 bits (283), Expect = 2e-24 Identities = 72/157 (45%), Positives = 101/157 (64%), Gaps = 3/157 (1%) Frame = +2 Query: 632 ILGLDCEMCVTAAGFELTRVTLVDI-KGEVILDKLVKPTNPITDYNTRFSGITAEMLSDV 808 +L LDCEM T+ G+EL R+T+V+ V+ D++V+P I D NT+FSG+ E+ V Sbjct: 223 VLALDCEMAYTSCGYELIRLTVVEFWTNAVLFDEIVQPLGEIIDLNTQFSGVH-EIDRAV 281 Query: 809 TTTLQEIQEEFVG--LVYKETILVGHSLENDLLALRISHDLVIDTAVLYKYNRGPRCKIA 982 T +E +E F+ ++ + +IL+GH LENDL LRI HD +IDTA+LY + K + Sbjct: 282 AKTFEEAREVFLSPAMINENSILIGHGLENDLNVLRIIHDKIIDTAILYP---NGKFKSS 338 Query: 983 LRVLANKYLSRVIQNTGSGHDSVEDARAALDLAFLKI 1093 LR LA + LSR IQ TG HDS EDA AA+D+ K+ Sbjct: 339 LRNLAFQELSRRIQ-TGE-HDSSEDAIAAMDVVKHKL 373
>Q12090:REXO3_YEAST RNA exonuclease 3 - Saccharomyces cerevisiae (Baker's yeast)| Length = 404 Score = 110 bits (274), Expect = 3e-23 Identities = 66/161 (40%), Positives = 99/161 (61%), Gaps = 3/161 (1%) Frame = +2 Query: 632 ILGLDCEMCVTAAGFELTRVTLVDI-KGEVILDKLVKPTNPITDYNTRFSGITAEMLSDV 808 +L LDCEM T+ G+E+ R+T+VD G+ + D +++P I D N+ FSG+ E+ Sbjct: 243 VLSLDCEMAFTSLGYEMIRLTIVDFFTGKTLFDHVIQPIGDIVDLNSDFSGVH-EIDRTN 301 Query: 809 TTTLQEIQEEFVG--LVYKETILVGHSLENDLLALRISHDLVIDTAVLYKYNRGPRCKIA 982 T +E + F+ L+ K +IL+GH LENDL +R+ H+ VIDTA+LY + K++ Sbjct: 302 CPTYKEALDVFLSENLINKNSILIGHGLENDLNVMRLFHNKVIDTAILYSRT---KFKVS 358 Query: 983 LRVLANKYLSRVIQNTGSGHDSVEDARAALDLAFLKIKYGP 1105 L+ LA + LSR IQN HDS +DA A +D+ +KI P Sbjct: 359 LKNLAFEVLSRKIQN--GEHDSSQDAIATMDVVKVKIGISP 397
>Q4WYA1:REXO3_ASPFU RNA exonuclease 3 - Aspergillus fumigatus (Sartorya fumigata)| Length = 645 Score = 105 bits (262), Expect = 7e-22 Identities = 72/177 (40%), Positives = 99/177 (55%), Gaps = 21/177 (11%) Frame = +2 Query: 623 PYEILGLDCEMCVTAAGFELTRVTLVDI-KGEVILDKLVKPTNPITDYNTRFSGITAE-- 793 P + + DCEM T G EL R+T V +G+++LD LV+P I D N+RFSG+ E Sbjct: 419 PQQPVCFDCEMGYTTLGLELIRLTAVSWPQGKLLLDILVRPMGEILDLNSRFSGVFPEHY 478 Query: 794 -------MLSDVTTT----LQEIQEEFVG--LVYK----ETILVGHSLENDLLALRISHD 922 S +TT LQ ++ L++K +T L+GH+++NDL A RI H Sbjct: 479 QKAIPYKSTSSPSTTGDGALQVVESPAAARALLFKFLQPDTPLIGHAIDNDLNACRIIHP 538 Query: 923 LVIDTAVLYKYNRGPRCKIALRVLANKYLSRVIQNTGS-GHDSVEDARAALDLAFLK 1090 +IDT +LY + RG ++ L+ L KYL R IQ GS GHDS EDA A DL +K Sbjct: 539 TIIDTVLLYPHPRGLPIRMGLKALVKKYLDRDIQTKGSQGHDSKEDAIATGDLVRVK 595
>Q5B367:REXO3_EMENI RNA exonuclease 3 - Emericella nidulans (Aspergillus nidulans)| Length = 619 Score = 100 bits (248), Expect = 3e-20 Identities = 76/201 (37%), Positives = 102/201 (50%), Gaps = 29/201 (14%) Frame = +2 Query: 575 SLPGFVPTVAAPSGSSPYEILGLDCEMCVTAAGFELTRVTLVDI-KGEVILDKLVKPTNP 751 S+ F T P +P I DCEM T G EL R+T V +G+ +LD LV+P Sbjct: 370 SILQFEKTPENPDLHNPTPIC-FDCEMGYTTLGMELIRLTAVSWPEGKKVLDVLVRPLGE 428 Query: 752 ITDYNTRFSGI------------TAEMLSDVTTTLQEIQEEFVG-----------LVYKE 862 + D N+RFSG+ TA S ++ Q + V L+ Sbjct: 429 VLDLNSRFSGVFPEHYTNALPYSTAPTKSSAPSSSSPSQLQLVSSPAAARTLLFNLLTPS 488 Query: 863 TILVGHSLENDLLALRISHDLVIDTAVLYKY-NRGPRCKIALRVLANKYLSRVIQNTGS- 1036 T L+GH+++NDL A RI H VIDTA+LY + G +++LR LA K+L R IQ G+ Sbjct: 489 TPLIGHAIDNDLNACRIIHPTVIDTAILYPHPGGGLPYRMSLRTLAKKHLDREIQTGGAS 548 Query: 1037 ---GHDSVEDARAALDLAFLK 1090 GHDSVEDA A DL +K Sbjct: 549 GKQGHDSVEDALATGDLVRVK 569
>Q6FIU7:REXO3_CANGA RNA exonuclease 3 - Candida glabrata (Yeast) (Torulopsis glabrata)| Length = 398 Score = 99.0 bits (245), Expect = 6e-20 Identities = 58/160 (36%), Positives = 97/160 (60%), Gaps = 3/160 (1%) Frame = +2 Query: 632 ILGLDCEMCVTAAGFELTRVTLVDI-KGEVILDKLVKPTNPITDYNTRFSGITAEMLSDV 808 +L LDCEM T G+E+ R+T+VD + + D++++P + D NT+FSG+ E + Sbjct: 239 VLALDCEMGFTTMGYEMVRLTIVDFFTSKTLYDEIIRPIGEVIDLNTQFSGVREEDIL-Y 297 Query: 809 TTTLQEIQEEFV--GLVYKETILVGHSLENDLLALRISHDLVIDTAVLYKYNRGPRCKIA 982 +++ E+ + ++ + +IL+GH LENDL +R+ H ++DTA++Y R K + Sbjct: 298 AKDYEDVMEDVLRADMINRNSILIGHGLENDLNVMRLFHTRILDTAIMYSVG---RFKNS 354 Query: 983 LRVLANKYLSRVIQNTGSGHDSVEDARAALDLAFLKIKYG 1102 L+ L+ + LSR IQ HDS +DA AA+D+ +K K G Sbjct: 355 LKNLSFEILSRKIQL--GEHDSSQDAIAAMDI--IKAKNG 390
>Q4PER6:REXO4_USTMA RNA exonuclease 4 - Ustilago maydis (Smut fungus)| Length = 375 Score = 88.6 bits (218), Expect = 9e-17 Identities = 63/169 (37%), Positives = 90/169 (53%), Gaps = 6/169 (3%) Frame = +2 Query: 584 GFVPTVAAPSGSSPYEILGLDCEMC-VTAAGFE--LTRVTLVDIKGEVILDKLVKPTNPI 754 G +P+ A+ + P L +DCEM V G E L RV++V+ G I D+ V+P + Sbjct: 119 GGLPSDASSAKKEPGNYLAIDCEMVGVGDKGSESILARVSIVNFHGATIYDQFVRPQEKV 178 Query: 755 TDYNTRFSGITAEMLSDVTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISHD--LV 928 TDY T SG+ + L + ++Q E L+ K +LVGH+++NDL AL +SH L+ Sbjct: 179 TDYRTWVSGVRPKDLKG-APSFSQVQGEVANLI-KGKVLVGHAIQNDLKALLLSHPKVLI 236 Query: 929 IDTAVLYKYNRGPRCKI-ALRVLANKYLSRVIQNTGSGHDSVEDARAAL 1072 DTA + K +L+ LA L IQ G H SVEDARA + Sbjct: 237 RDTATFQPLRDLAKTKYPSLKKLAKLVLGIDIQLEGESHSSVEDARATM 285
>Q96AZ6:ISG20_HUMAN Interferon-stimulated gene 20 kDa protein - Homo sapiens (Human)| Length = 181 Score = 88.6 bits (218), Expect = 9e-17 Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 8/158 (5%) Frame = +2 Query: 629 EILGLDCEMCVTAAGFE--LTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEMLS 802 E++ +DCEM E L R +LV++ G V+ DK ++P ITDY TR SG+T + + Sbjct: 6 EVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHM- 64 Query: 803 DVTTTLQEIQEEFVGLVYKETILVGHSLENDLLALR--ISHDLVIDTA---VLYKYNRGP 967 V T + + + K ++VGH L++D AL+ +S + DT+ +L++ + Sbjct: 65 -VGATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLD 123 Query: 968 RC-KIALRVLANKYLSRVIQNTGSGHDSVEDARAALDL 1078 C +++LRVL+ + L + IQN+ GH SVEDARA ++L Sbjct: 124 HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMEL 161
>Q66UW5:ISG20_PIG Interferon-stimulated gene 20 kDa protein - Sus scrofa (Pig)| Length = 181 Score = 86.3 bits (212), Expect = 4e-16 Identities = 55/158 (34%), Positives = 92/158 (58%), Gaps = 8/158 (5%) Frame = +2 Query: 629 EILGLDCEMCVTAAGFE--LTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEMLS 802 E++ +DCEM E L R +LV++ G V+ DK ++P ITDY TR SG+T + + Sbjct: 6 EVVAMDCEMVGMGPRRESGLARCSLVNVHGAVLYDKFIQPEGEITDYRTRVSGVTPQHM- 64 Query: 803 DVTTTLQEIQEEFVGLVYKETILVGHSLENDLLALR--ISHDLVIDTA---VLYKYNRGP 967 V T + + + K ++VGH L++D AL+ ++ + DT+ +L++ + Sbjct: 65 -VGATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMNRYTIYDTSTDMLLWREAKLD 123 Query: 968 RC-KIALRVLANKYLSRVIQNTGSGHDSVEDARAALDL 1078 C +++LRVL + L + IQN+ GH SVEDA+A ++L Sbjct: 124 HCRRVSLRVLCERLLHKSIQNSLLGHSSVEDAKATMEL 161
>Q9H9L3:I20L2_HUMAN Interferon-stimulated 20 kDa exonuclease-like 2 - Homo sapiens| (Human) Length = 353 Score = 81.3 bits (199), Expect = 1e-14 Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 12/168 (7%) Frame = +2 Query: 611 SGSS---PYEILGLDCEMCVTAAG---FELTRVTLVDIKGEVILDKLVKPTNPITDYNTR 772 SG+S P +++ +DCEM T L R ++V+ G+V+ D+ + P I DY TR Sbjct: 169 SGASQKLPRKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTR 228 Query: 773 FSGITAEMLSDVTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISH--DLVIDTAVL 946 +SGI + + V T +I + + I+VGH++ ND AL+ H L DT+ + Sbjct: 229 WSGIRKQHM--VNATPFKIARGQILKILTGKIVVGHAIHNDFKALQYFHPKSLTRDTSHI 286 Query: 947 YKYNRGPRC----KIALRVLANKYLSRVIQNTGSGHDSVEDARAALDL 1078 NR C ++L+ L K L+R IQ SGH SVEDA+A ++L Sbjct: 287 PPLNRKADCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMEL 334
>Q4IEV5:REXO4_GIBZE RNA exonuclease 4 - Gibberella zeae (Fusarium graminearum)| Length = 319 Score = 80.1 bits (196), Expect = 3e-14 Identities = 93/297 (31%), Positives = 137/297 (46%), Gaps = 28/297 (9%) Frame = +2 Query: 290 AALYMSQSRLLSSLKELCGNP-----KPVLASSCIPDERHTIDALLTCRVKRKRQSQTSN 454 AAL + +L + LKE + KP ++ P ++ + T +K + +QTS+ Sbjct: 2 AALSSNWKKLQAKLKEESASKPSLKRKPETPATNPPTKKPKVQKSFTKTLKAAKSAQTSD 61 Query: 455 QSN----------ESDGGKLSSLA---DLKDIPFSV--KYYTLSKKDLEDNGYPLSLPGF 589 + E+ G +SLA + D+ + Y L KD N L+ Sbjct: 62 KKKMGGVHSSKIEETAPGTSTSLALWAEDHDVSAEALAEAYNLGAKD---NSMMLAAAKD 118 Query: 590 VPTVAAPSGSSPYEILGLDCEMC-VTAAGFE--LTRVTLVDIKGEVILDKLVKPTNPITD 760 G + + +DCEM V G E L RV++VD G I D VKP +T+ Sbjct: 119 KINHGLTEGIEIGKYIAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTN 178 Query: 761 YNTRFSGITAEMLSDVTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISH--DLVID 934 + T SGI+ + + +E+Q E + + + ILVGH L++DL AL +SH + D Sbjct: 179 WRTAVSGISQKSMR-FARDFEEVQAE-IDKLLRGRILVGHDLKHDLEALILSHPGKDIRD 236 Query: 935 TAV---LYKYNRGPRCKIALRVLANKYLSRVIQNTGSGHDSVEDARAALDLAFLKIK 1096 TA KY G K +LRVLA + L IQ G H S+EDARA + L F K K Sbjct: 237 TAKFSGFKKYANGR--KPSLRVLAQQLLGVEIQ--GGEHSSIEDARATM-LLFRKHK 288
>Q6FQA0:REXO4_CANGA RNA exonuclease 4 - Candida glabrata (Yeast) (Torulopsis glabrata)| Length = 263 Score = 79.0 bits (193), Expect = 7e-14 Identities = 60/155 (38%), Positives = 88/155 (56%), Gaps = 9/155 (5%) Frame = +2 Query: 635 LGLDCEMC-VTAAGFE--LTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEMLSD 805 + +DCE V G + L RV+LV+ G V+LD VKP +TD+ T SGIT + + + Sbjct: 96 IAMDCEFVGVGPEGKDSALARVSLVNFHGNVVLDIFVKPRETVTDWRTWVSGITPDHMKN 155 Query: 806 VTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISH--DLVIDTA----VLYKYNRGP 967 + Q Q+ + + K+ ILVGH++++DL AL +SH VIDTA KY +G Sbjct: 156 AVSFKQAQQQ--LSDILKDKILVGHAVKHDLEALMLSHPKSKVIDTARHLPFRQKYAKGK 213 Query: 968 RCKIALRVLANKYLSRVIQNTGSGHDSVEDARAAL 1072 +L+ LA + L+ IQ+ H SVEDARA + Sbjct: 214 --SPSLKKLAKEILNMDIQS--GQHSSVEDARATM 244
>Q7S9B7:REXO4_NEUCR RNA exonuclease 4 - Neurospora crassa| Length = 406 Score = 77.4 bits (189), Expect = 2e-13 Identities = 64/166 (38%), Positives = 85/166 (51%), Gaps = 8/166 (4%) Frame = +2 Query: 635 LGLDCEMCVTA---AGFELTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEMLSD 805 L +DCEM T A L R ++VD G I D V+PT +TD+ T SGI+ ++ Sbjct: 217 LSIDCEMVGTGPSGATSVLARCSIVDFHGHQIYDSYVRPTAFVTDWRTHVSGISKRHMAS 276 Query: 806 VTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISHDL--VIDTAV---LYKYNRGPR 970 + E + V + K ILVGH +++DL L H + DTA KY GP Sbjct: 277 ARSF--ESVQATVAALLKGRILVGHDVKHDLEVLGFEHPHRDIRDTAKYSGFRKYGHGP- 333 Query: 971 CKIALRVLANKYLSRVIQNTGSGHDSVEDARAALDLAFLKIKYGPD 1108 K +LRVLA + L I+ H SVEDAR A+ L F K K+G D Sbjct: 334 -KPSLRVLAKEVLG--IEIHQGQHSSVEDARVAM-LLFRKEKHGFD 375
>Q9GZR2:REXO4_HUMAN RNA exonuclease 4 - Homo sapiens (Human)| Length = 422 Score = 77.4 bits (189), Expect = 2e-13 Identities = 60/154 (38%), Positives = 85/154 (55%), Gaps = 6/154 (3%) Frame = +2 Query: 635 LGLDCEMC-VTAAGFE--LTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEMLSD 805 L LDCEM V G E RV++V+ G+ + DK VKPT P+TDY T SGI E L Sbjct: 244 LALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQ 303 Query: 806 VTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISH--DLVIDTAVLYKYNRGPRC-K 976 L+ +Q+E V + K ILVGH+L NDL L + H + DT + + + Sbjct: 304 -GEELEVVQKE-VAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKSGR 361 Query: 977 IALRVLANKYLSRVIQNTGSGHDSVEDARAALDL 1078 +LR+L+ K L +Q + H S++DA+AA+ L Sbjct: 362 PSLRLLSEKILGLQVQQ--AEHCSIQDAQAAMRL 393
>Q6BIK6:REXO4_DEBHA RNA exonuclease 4 - Debaryomyces hansenii (Yeast) (Torulaspora| hansenii) Length = 272 Score = 74.3 bits (181), Expect = 2e-12 Identities = 58/156 (37%), Positives = 86/156 (55%), Gaps = 6/156 (3%) Frame = +2 Query: 623 PYEILGLDCEMC-VTAAGFE--LTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAE 793 P + L +DCE V G E L RV++V+ G + DK VKP +TD+ T SG+T + Sbjct: 96 PGKYLAMDCEFVGVGPEGTESALARVSIVNFYGHTVFDKFVKPRERVTDWRTWVSGVTPK 155 Query: 794 MLSDVTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISH--DLVIDTAVLYKYNRGP 967 +++ + QE Q E L+ + ILVGH++ +DL AL +SH + DT+ + Sbjct: 156 HMNE-AISFQEAQNETSKLL-EGRILVGHAIHHDLDALFLSHPKSRIRDTSQYKPFRSIS 213 Query: 968 RCKI-ALRVLANKYLSRVIQNTGSGHDSVEDARAAL 1072 K +L+ L+ +L IQ GS H SVEDARA + Sbjct: 214 MGKTPSLKKLSLHFLKIDIQ--GSAHSSVEDARATM 247
>O94375:REXO4_SCHPO RNA exonuclease 4 - Schizosaccharomyces pombe (Fission yeast)| Length = 260 Score = 73.9 bits (180), Expect = 2e-12 Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 4/158 (2%) Frame = +2 Query: 635 LGLDCEMCVTAAGFE-LTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEMLSDVT 811 + +DCEM A L RV++V+ G V+ D V+P +TD+ T SG+ + + D Sbjct: 94 IAMDCEMVGVADDMSVLARVSIVNYHGHVVYDTYVRPKEKVTDWRTWVSGVKSFHMRD-A 152 Query: 812 TTLQEIQEEFVGLVYKETILVGHSLENDLLALRISHD--LVIDTAVLYKYNRGPRCKI-A 982 + +++Q E V + +LVGH++ NDL L +SH ++ DT+ Y + + + Sbjct: 153 PSFEKVQAE-VAKILDNRVLVGHAVHNDLKVLLLSHPRRMIRDTSRFSGYRKLAKGRTPG 211 Query: 983 LRVLANKYLSRVIQNTGSGHDSVEDARAALDLAFLKIK 1096 L+ LA L R IQ+ H SV+DA+A ++L + K+K Sbjct: 212 LKKLAEVILGRDIQS--GQHSSVQDAQATMEL-YKKVK 246
>Q6CMT3:REXO4_KLULA RNA exonuclease 4 - Kluyveromyces lactis (Yeast) (Candida sphaerica)| Length = 294 Score = 73.9 bits (180), Expect = 2e-12 Identities = 55/155 (35%), Positives = 83/155 (53%), Gaps = 9/155 (5%) Frame = +2 Query: 635 LGLDCEMCVTAAGFE---LTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEMLSD 805 + +DCE + L RV++V+ G V+LD V+P P+TD+ T SGI +++ Sbjct: 120 VSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMAN 179 Query: 806 VTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISHD--LVIDTA----VLYKYNRGP 967 T QE ++ V V K ILVGHS+ +DL AL +SH ++ DT+ KY+ G Sbjct: 180 AVT--QEDCQKQVSNVLKGRILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQKYSEGK 237 Query: 968 RCKIALRVLANKYLSRVIQNTGSGHDSVEDARAAL 1072 +L+ L + L IQ+ H S+EDARA + Sbjct: 238 --TPSLKKLTKEILQLDIQD--GEHSSIEDARATM 268
>Q757I9:REXO4_ASHGO RNA exonuclease 4 - Ashbya gossypii (Yeast) (Eremothecium gossypii)| Length = 285 Score = 73.9 bits (180), Expect = 2e-12 Identities = 64/178 (35%), Positives = 93/178 (52%), Gaps = 7/178 (3%) Frame = +2 Query: 629 EILGLDCEMC-VTAAGFE--LTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEML 799 + + +DCE V G E L RV++V+ G+ +LD V+P +TD+ T SGIT + Sbjct: 112 KFVAMDCEFVGVGPDGKESVLARVSVVNYYGQEVLDLYVRPKEKVTDWRTWVSGITPAHM 171 Query: 800 SDVTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISHD--LVIDTAV--LYKYNRGP 967 TL+E Q V + K +L+GH L +DL L +SH + DT++ ++ G Sbjct: 172 KQ-AVTLEEAQRR-VAAMLKNRVLIGHGLHHDLEMLMVSHPKAQIRDTSMHGPFREKYGA 229 Query: 968 RCKIALRVLANKYLSRVIQNTGSGHDSVEDARAALDLAFLKIKYGPDFGSPPSFSRRK 1141 +L+ LA + L+ IQ G H SVEDARAAL L + K + FSRRK Sbjct: 230 GKTPSLKKLAREVLNIDIQ--GKEHSSVEDARAAL-LLYKSDKVEFERLHQQRFSRRK 284
>Q6PAQ4:REXO4_MOUSE RNA exonuclease 4 - Mus musculus (Mouse)| Length = 432 Score = 73.2 bits (178), Expect = 4e-12 Identities = 58/154 (37%), Positives = 83/154 (53%), Gaps = 6/154 (3%) Frame = +2 Query: 635 LGLDCEMC-VTAAGFE--LTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEMLSD 805 L LDCEM V G E RV++V+ G+ + DK VKPT P+TDY T SGI E L Sbjct: 254 LALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQ 313 Query: 806 VTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISH--DLVIDTAVLYKY-NRGPRCK 976 E+ ++ V + K ILVGH+L NDL L + H + DT + +R + Sbjct: 314 GEEF--EVVKKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKFKPFRSRVKSGR 371 Query: 977 IALRVLANKYLSRVIQNTGSGHDSVEDARAALDL 1078 +L+ L+ K L +Q + H S++DA+AA+ L Sbjct: 372 PSLKRLSEKILGIRVQQ--AEHCSIQDAQAAMRL 403
>Q5KJQ4:REXO4_CRYNE RNA exonuclease 4 - Cryptococcus neoformans (Filobasidiella| neoformans) Length = 408 Score = 73.2 bits (178), Expect = 4e-12 Identities = 63/167 (37%), Positives = 88/167 (52%), Gaps = 11/167 (6%) Frame = +2 Query: 611 SGSSPYEILGLDCEMC-VTAAGFE--LTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSG 781 S P + L +DCEM V G E L RV++V+ G VILD V+P P+TDY T SG Sbjct: 125 SQKEPGQYLAIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISG 184 Query: 782 ITAEMLSDVTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISH--DLVIDTAVLYKY 955 + L E+ ++ L++ + IL+GH+++NDL L ++H L DT KY Sbjct: 185 VKQSDLLG-APQFDEVNKQVANLLH-DKILIGHAIDNDLKVLMLTHPGPLTRDT---QKY 239 Query: 956 NRGPRCKIA------LRVLANKYLSRVIQNTGSGHDSVEDARAALDL 1078 P +IA L+ L+ L IQ TG+ H SV DAR A+ L Sbjct: 240 K--PLQEIAKNKRPGLKKLSELLLGVQIQ-TGA-HSSVVDARVAMAL 282
>Q4WHF8:REXO4_ASPFU RNA exonuclease 4 - Aspergillus fumigatus (Sartorya fumigata)| Length = 310 Score = 73.2 bits (178), Expect = 4e-12 Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 15/168 (8%) Frame = +2 Query: 614 GSSPYEILG----LDCEMCVTAAGFE----LTRVTLVDIKGEVILDKLVKPTNPITDYNT 769 G SP +G +DCEM + L RV++V+ GE + D V+P ITD+ T Sbjct: 106 GRSPTAEIGKYVAMDCEMVGVGPNPDNDSALARVSIVNFNGEQVYDSYVRPKEMITDWRT 165 Query: 770 RFSGITAEMLSDVTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISHDL--VIDTAV 943 SGI+ + +++ +L+++Q++ V + ILVGH++ NDL AL + H + DT+ Sbjct: 166 HVSGISPKHMAE-ARSLEQVQKD-VAEILDGRILVGHAVSNDLDALLLGHPKRDIRDTSK 223 Query: 944 LYKYNR-----GPRCKIALRVLANKYLSRVIQNTGSGHDSVEDARAAL 1072 Y + PR L++LA+++L IQ+ H SVEDA+A + Sbjct: 224 HPPYRKIAGGGSPR----LKILASEFLGLNIQD--GAHSSVEDAKATM 265
>Q91560:REXO4_XENLA RNA exonuclease 4 - Xenopus laevis (African clawed frog)| Length = 421 Score = 68.6 bits (166), Expect = 9e-11 Identities = 54/160 (33%), Positives = 87/160 (54%), Gaps = 6/160 (3%) Frame = +2 Query: 635 LGLDCEMCVTAAGFE---LTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEMLSD 805 + +DCEM E L RV++V++ G+ + DK VKPT +TDY T SGI E + Sbjct: 235 VAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPEDVKK 294 Query: 806 VTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISH--DLVIDTAVLYKYNRGPRC-K 976 + +Q+E V + + LVGH++ NDL L + H + DT + + + + Sbjct: 295 -GEPFKVVQKE-VSEILRGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKQKVKSGR 352 Query: 977 IALRVLANKYLSRVIQNTGSGHDSVEDARAALDLAFLKIK 1096 +L++L K L+ +Q TG H SV+DA+AA+ L ++ K Sbjct: 353 PSLKLLCEKILNVKVQ-TGE-HCSVQDAQAAMRLYTMEKK 390
>Q6DEW6:REXO4_XENTR RNA exonuclease 4 - Xenopus tropicalis (Western clawed frog)| (Silurana tropicalis) Length = 414 Score = 68.2 bits (165), Expect = 1e-10 Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 6/160 (3%) Frame = +2 Query: 635 LGLDCEMCVTAAGFE---LTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEMLSD 805 + +DCEM E L RV++V++ G+ + DK V+PT +TDY T SGI + + + Sbjct: 229 VAMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYVRPTERVTDYRTAVSGIRPDDIKN 288 Query: 806 VTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISH--DLVIDTAVLYKYNRGPRC-K 976 +++Q E V + + LVGH++ NDL L + H + DT + + + Sbjct: 289 -GEAFKDVQAE-VAEILRGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKEKVKSGR 346 Query: 977 IALRVLANKYLSRVIQNTGSGHDSVEDARAALDLAFLKIK 1096 +L++L K L+ +Q TG H SV+DA+AA+ L ++ K Sbjct: 347 PSLKLLCEKILNVKVQ-TGE-HCSVQDAQAAMRLYTMEKK 384
>Q08237:REXO4_YEAST RNA exonuclease 4 - Saccharomyces cerevisiae (Baker's yeast)| Length = 289 Score = 67.4 bits (163), Expect = 2e-10 Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 11/157 (7%) Frame = +2 Query: 635 LGLDCEMC-VTAAGFE--LTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEMLSD 805 + +DCE V G E L R+++V+ G V+LD+ VKP + ++ T SGI E + + Sbjct: 122 IAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHMKN 181 Query: 806 VTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISH--DLVIDTA------VLYKYNR 961 T +E Q++ ++ + ILVGH+L++DL AL +SH L+ DT+ LY + Sbjct: 182 -AITFKEAQKKTADIL-EGRILVGHALKHDLEALMLSHPKSLLRDTSRHLPFRKLYAKGK 239 Query: 962 GPRCKIALRVLANKYLSRVIQNTGSGHDSVEDARAAL 1072 P +L+ L + L IQ H SVEDARA + Sbjct: 240 TP----SLKKLTREVLKISIQE--GEHSSVEDARATM 270
>Q5F450:UBP52_CHICK PAB-dependent poly(A)-specific ribonuclease subunit 2 - Gallus gallus| (Chicken) Length = 1197 Score = 64.7 bits (156), Expect = 1e-09 Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 9/165 (5%) Frame = +2 Query: 707 KGEVILDKLVKPTNPITDYNTRFSGIT-----AEMLSDVTTTLQEIQEEFVGLVYKETIL 871 +G +D + + DY T++SGI A++ S TTL+ + L+ Sbjct: 1015 EGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDVGVKF 1074 Query: 872 VGHSLEND--LLALRISHDLVIDTAVLYKYNRGPRCKIALRVLANKYLSRVIQNTGSGHD 1045 VGH L+ D ++ L + D VIDT L+ R + I+LR LA +L IQ G HD Sbjct: 1075 VGHGLQKDFRVINLMVPKDQVIDTVYLFHIPR--KRMISLRFLAWYFLDLKIQ--GETHD 1130 Query: 1046 SVEDARAALDL--AFLKIKYGPDFGSPPSFSRRKLASILHECGKR 1174 S+EDAR AL L +L++ G GS P RK+ L+E G++ Sbjct: 1131 SIEDARTALQLYRKYLELSQG---GSEPD-DFRKVLKALYEKGRK 1171
>Q6CE69:REXO4_YARLI RNA exonuclease 4 - Yarrowia lipolytica (Candida lipolytica)| Length = 291 Score = 63.2 bits (152), Expect = 4e-09 Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 6/170 (3%) Frame = +2 Query: 581 PGFVPTVAAPSGSSPYEILGLDCEMC---VTAAGFELTRVTLVDIKGEVILDKLVKPTNP 751 P + V A +P + + LDCE A L RV++V+ G V++D+ VKP Sbjct: 116 PQPIEPVLARWKCAPGKFIALDCEFVGVGPNGARSILARVSIVNYYGHVLMDEYVKPIER 175 Query: 752 ITDYNTRFSGITAEMLSDVTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISHDL-- 925 +TD+ T SG+T M+++ + E QE L+ T L+GH+L NDL L + H Sbjct: 176 VTDWRTWVSGVTPAMVAN-GISFSEAQERVKRLLNGRT-LIGHALINDLAVLGLDHPRAD 233 Query: 926 VIDTAVLYKYNRGPRCKI-ALRVLANKYLSRVIQNTGSGHDSVEDARAAL 1072 + DT + CK +L+ + + + IQ H SV DA+AA+ Sbjct: 234 IRDTQKPQYFKTVCGCKTPSLKHVMKECVDLNIQQ--GEHSSVIDAQAAM 281
>Q8BGF7:UBP52_MOUSE PAB-dependent poly(A)-specific ribonuclease subunit 2 - Mus musculus| (Mouse) Length = 1200 Score = 62.8 bits (151), Expect = 5e-09 Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 7/188 (3%) Frame = +2 Query: 707 KGEVILDKLVKPTNPITDYNTRFSGIT-----AEMLSDVTTTLQEIQEEFVGLVYKETIL 871 +G +D + + DY T++SGI A++ S TTL+ + L+ Sbjct: 1019 EGIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKF 1078 Query: 872 VGHSLEND--LLALRISHDLVIDTAVLYKYNRGPRCKIALRVLANKYLSRVIQNTGSGHD 1045 VGH L+ D ++ L + D V+DT L+ R + I+LR LA +L IQ G HD Sbjct: 1079 VGHGLQKDFRVINLMVPKDQVLDTVYLFHMPR--KRMISLRFLAWYFLDLKIQ--GETHD 1134 Query: 1046 SVEDARAALDLAFLKIKYGPDFGSPPSFSRRKLASILHECGKRSSLIDEVFVLDRYSDAS 1225 S+EDAR AL L ++ + P SF K+ L+E G++ + V + S S Sbjct: 1135 SIEDARTALQLYRKYLELSKNGTEPESF--HKVLKGLYEKGRKM----DWKVPEPESQTS 1188 Query: 1226 SNSIAVFS 1249 + AVFS Sbjct: 1189 PKNAAVFS 1196
>Q6IE70:UBP52_RAT PAB-dependent poly(A)-specific ribonuclease subunit 2 - Rattus| norvegicus (Rat) Length = 1205 Score = 62.0 bits (149), Expect = 9e-09 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 7/163 (4%) Frame = +2 Query: 707 KGEVILDKLVKPTNPITDYNTRFSGIT-----AEMLSDVTTTLQEIQEEFVGLVYKETIL 871 +G +D + + DY T++SGI A++ S TTL+ + L+ Sbjct: 1020 EGIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKF 1079 Query: 872 VGHSLEND--LLALRISHDLVIDTAVLYKYNRGPRCKIALRVLANKYLSRVIQNTGSGHD 1045 VGH L+ D ++ L + D V+DT L+ R + I+LR LA +L IQ G HD Sbjct: 1080 VGHGLQKDFRVINLMVPKDQVLDTVYLFHMPR--KRMISLRFLAWYFLDLKIQ--GETHD 1135 Query: 1046 SVEDARAALDLAFLKIKYGPDFGSPPSFSRRKLASILHECGKR 1174 S+EDAR AL L ++ + P SF K+ L+E G++ Sbjct: 1136 SIEDARTALQLYRKYLELSKNGAEPESF--HKVLKGLYEKGRK 1176
>Q504Q3:UBP52_HUMAN PAB-dependent poly(A)-specific ribonuclease subunit 2 - Homo sapiens| (Human) Length = 1202 Score = 62.0 bits (149), Expect = 9e-09 Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 7/193 (3%) Frame = +2 Query: 707 KGEVILDKLVKPTNPITDYNTRFSGIT-----AEMLSDVTTTLQEIQEEFVGLVYKETIL 871 +G +D + + DY T++SGI A++ S TTL+ + L+ Sbjct: 1020 EGIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKF 1079 Query: 872 VGHSLEND--LLALRISHDLVIDTAVLYKYNRGPRCKIALRVLANKYLSRVIQNTGSGHD 1045 VGH L+ D ++ L + D V+DT L+ R + I+LR LA +L IQ G HD Sbjct: 1080 VGHGLQKDFRVINLMVPKDQVLDTVYLFHMPR--KRMISLRFLAWYFLDLKIQ--GETHD 1135 Query: 1046 SVEDARAALDLAFLKIKYGPDFGSPPSFSRRKLASILHECGKRSSLIDEVFVLDRYSDAS 1225 S+EDAR AL L ++ + P SF K+ L+E G++ + V + S Sbjct: 1136 SIEDARTALQLYRKYLELSKNGTEPESF--HKVLKGLYEKGRKM----DWKVPEPEGQTS 1189 Query: 1226 SNSIAVFSDDNAL 1264 + AVFS AL Sbjct: 1190 PKNAAVFSSVLAL 1202
>P53015:YPO4_CAEEL Uncharacterized protein F31E3.4 - Caenorhabditis elegans| Length = 1131 Score = 59.7 bits (143), Expect = 4e-08 Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 12/149 (8%) Frame = +2 Query: 686 RVTLVDIKGE-VILDKLVKPTNPI--TDYNTRFSGITAEMLSDVT-----TTLQEIQEEF 841 R + VD GE +I D VK T+ + DY T+FSGI L T TT + + Sbjct: 937 RASCVDSTGERIIFDDHVKLTDDVEVVDYLTKFSGIVKADLCPTTSEKYLTTHKRLLLRM 996 Query: 842 VGLVYKETILVGHSLEND--LLALRISHDLVIDTAVLYKYNRGPRCKIALRVLANKYLSR 1015 L+ + VGH+L ND +L + ++ +IDT L + G + ++L+ L + L Sbjct: 997 HVLIQRGVTFVGHALHNDFTVLNVHVAESQIIDTVTLMRL--GTQRMLSLQFLVKEILGE 1054 Query: 1016 VIQNTGSGHDSVEDARAALDL--AFLKIK 1096 IQ HDSV DAR AL L +L+IK Sbjct: 1055 TIQM--EAHDSVVDARYALKLYRKYLEIK 1081
>Q5A3Q0:REXO4_CANAL RNA exonuclease 4 - Candida albicans (Yeast)| Length = 285 Score = 59.7 bits (143), Expect = 4e-08 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 6/156 (3%) Frame = +2 Query: 623 PYEILGLDCEMCVTAAGFE---LTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAE 793 P + + +DCE E L R+++++ G V+LD V+P +TD+ T SGI + Sbjct: 113 PGKYVAIDCEFVGIGKDGEESALARISIINYYGVVLLDTYVRPQERVTDWRTWVSGIQSY 172 Query: 794 MLSDVTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISH--DLVIDTAVLYKYNRGP 967 + D + Q + + L+ ILVGH++ NDL L +SH ++ DT K+ Sbjct: 173 HMQD-AIDFKTAQLKTMELI-NNKILVGHAVNNDLDILFLSHPKSMIRDTCKFPKFREIA 230 Query: 968 RCKI-ALRVLANKYLSRVIQNTGSGHDSVEDARAAL 1072 K +L+ L ++ IQ H SVEDARA + Sbjct: 231 GGKSPSLKKLIKHFIQVDIQI--GQHSSVEDARATM 264
>Q9JL16:ISG20_MOUSE Interferon-stimulated gene 20 kDa protein - Mus musculus (Mouse)| Length = 300 Score = 59.7 bits (143), Expect = 4e-08 Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 8/140 (5%) Frame = +2 Query: 629 EILGLDCEMCVTAAG--FELTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEMLS 802 E++ +DCEM L R ++V+I G V+ DK ++P ITDY T+ SG+T + + Sbjct: 6 EVVAMDCEMVGLGPQRVSGLARCSIVNIHGAVLYDKYIRPEGEITDYRTQVSGVTPQHMV 65 Query: 803 DVTTTLQEIQEEFVGLVYKETILVGHSLENDLLALR------ISHDLVIDTAVLYKYNRG 964 T E + E + L+ K ++VGH L++D AL+ +D D + ++ Sbjct: 66 R-ATPFGEARLEILQLL-KGKLVVGHDLKHDFNALKEDMSKYTIYDTSTDRLLWHEAKLQ 123 Query: 965 PRCKIALRVLANKYLSRVIQ 1024 +++LR+L + L + IQ Sbjct: 124 YYSRVSLRLLCKRLLHKNIQ 143
>P53010:PAN2_YEAST PAB-dependent poly(A)-specific ribonuclease subunit PAN2 -| Saccharomyces cerevisiae (Baker's yeast) Length = 1115 Score = 53.1 bits (126), Expect = 4e-06 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 12/145 (8%) Frame = +2 Query: 680 LTRVTLV-----DIKGEVILDKLVKPTNPITDYNTRFSGITAEMLSDVTTTLQEIQEEFV 844 L R++++ ++ G +D V TN I DY TR+SGI L +T + ++ V Sbjct: 939 LARISIIRGEEGELYGVPFVDDYVVNTNHIEDYLTRYSGILPGDLDPEKSTKRLVRRNVV 998 Query: 845 G-----LVYKETILVGHSLENDL--LALRISHDLVIDTAVLYKYNRGPRCKIALRVLANK 1003 L+ + VGH L ND + + + + + DTA+ + +G R ++LR LA Sbjct: 999 YRKVWLLMQLGCVFVGHGLNNDFKHININVPRNQIRDTAIYFL--QGKR-YLSLRYLAYV 1055 Query: 1004 YLSRVIQNTGSGHDSVEDARAALDL 1078 L IQ HDS+EDA AL L Sbjct: 1056 LLGMNIQE--GNHDSIEDAHTALIL 1078
>Q09798:YAA4_SCHPO Uncharacterized protein C22G7.04 - Schizosaccharomyces pombe (Fission| yeast) Length = 1115 Score = 49.3 bits (116), Expect = 6e-05 Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 7/131 (5%) Frame = +2 Query: 707 KGEVILDKLVKPTNPITDYNTRFSGITAEMLSD-----VTTTLQEIQEEFVGLVYKETIL 871 KG +D V + +TDY T +SGI L L+ ++ LV I Sbjct: 932 KGLPFIDDYVATDDKVTDYLTEYSGIHPGDLDPDRSPYNVVPLKVAYKKLRLLVNAGCIF 991 Query: 872 VGHSLEND--LLALRISHDLVIDTAVLYKYNRGPRCKIALRVLANKYLSRVIQNTGSGHD 1045 VGH L+ D ++ L + + V+DT L+ + R K++L+ LA L IQ T HD Sbjct: 992 VGHGLQKDFRIINLLVPPEQVVDTVDLFFLSSRQR-KLSLKFLAWYLLDEEIQLT--EHD 1048 Query: 1046 SVEDARAALDL 1078 S+EDA AL L Sbjct: 1049 SIEDALTALKL 1059
>Q9ZHF6:DPO3_THEMA DNA polymerase III polC-type - Thermotoga maritima| Length = 1367 Score = 47.0 bits (110), Expect = 3e-04 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 16/162 (9%) Frame = +2 Query: 626 YEILGLDCEMCVTAAGFELTRVTLVDIKGEVILDK---LVKPTNPITDYNTRFSGITAEM 796 +E GLD ++ E+ + V I+G I+D+ L+KP+ I+ ++ +GIT EM Sbjct: 363 FETTGLDPQVD------EIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEM 416 Query: 797 LSDVTTTLQEIQEEFVGLVYKETILVGHSLENDLLALRISHDLV---------IDTAVLY 949 L + +++E+ EF+G + +++I+V H+ D LR+ V IDT L Sbjct: 417 LEN-KRSIEEVLPEFLGFL-EDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALA 474 Query: 950 KYNRGPRCKIALRVLANKYLSRVIQNTGSG----HDSVEDAR 1063 K +L L + L V++ G G H +++DAR Sbjct: 475 K---------SLLKLRSYSLDSVVEKLGLGPFRHHRALDDAR 507
>P41060:CP81_BP186 Uncharacterized exonuclease CP81 - Bacteriophage 186| Length = 194 Score = 38.1 bits (87), Expect = 0.13 Identities = 20/53 (37%), Positives = 28/53 (52%) Frame = +2 Query: 641 LDCEMCVTAAGFELTRVTLVDIKGEVILDKLVKPTNPITDYNTRFSGITAEML 799 +D E E+ + L+D G ++L+ LVKPT PI T GIT EM+ Sbjct: 23 IDTETTGLGDDAEIVEICLIDSAGFIMLNTLVKPTKPIPAEATAIHGITDEMV 75
>Q6NH32:Y1313_CORDI UPF0042 protein DIP1313 - Corynebacterium diphtheriae| Length = 299 Score = 35.8 bits (81), Expect = 0.66 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = +2 Query: 863 TILVGHSLENDLL-ALRISHDLVIDTAVLYKYNRGPRCKIALRVLANKYLSRVIQNTGSG 1039 T+LVG E +++ ++ S D+VIDT+ L ++ ++ +ANK +Q+ G Sbjct: 127 TLLVGIEREREIMNQIKESADVVIDTSDLSIHDLRRSIELNFNGIANKLQHVTVQSFGFK 186 Query: 1040 HDSVEDARAALDLAFL 1087 H S D +D+ FL Sbjct: 187 HGSPRDTDLLIDVRFL 202
>Q8DRA5:DPO3_STRR6 DNA polymerase III polC-type - Streptococcus pneumoniae (strain| ATCC BAA-255 / R6) Length = 1463 Score = 35.8 bits (81), Expect = 0.66 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 13/90 (14%) Frame = +2 Query: 707 KGEVI--LDKLVKPTNPITDYNTRFSGITAEMLSDVTTTLQEIQE--EFVGLVYKETILV 874 KG VI D+ + P +P++ + T +GIT + + + Q +QE EF K+T+LV Sbjct: 452 KGNVIAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFC----KDTVLV 507 Query: 875 GHSLENDLLALRIS---HDL------VIDT 937 H+ D+ + + HDL VIDT Sbjct: 508 AHNATFDVGFMNANYERHDLPKISQPVIDT 537
>Q97SQ2:DPO3_STRPN DNA polymerase III polC-type - Streptococcus pneumoniae| Length = 1463 Score = 35.8 bits (81), Expect = 0.66 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 13/90 (14%) Frame = +2 Query: 707 KGEVI--LDKLVKPTNPITDYNTRFSGITAEMLSDVTTTLQEIQE--EFVGLVYKETILV 874 KG VI D+ + P +P++ + T +GIT + + + Q +QE EF K+T+LV Sbjct: 452 KGNVIAEFDEFINPGHPLSAFTTELTGITDDHVKNAKPLEQVLQEFQEFC----KDTVLV 507 Query: 875 GHSLENDLLALRIS---HDL------VIDT 937 H+ D+ + + HDL VIDT Sbjct: 508 AHNATFDVGFMNANYERHDLPKISQPVIDT 537
>O75694:NU155_HUMAN Nuclear pore complex protein Nup155 - Homo sapiens (Human)| Length = 1391 Score = 35.4 bits (80), Expect = 0.86 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 1/99 (1%) Frame = +2 Query: 1007 LSRVIQNTGSGHDSVEDARAALDLAFLKI-KYGPDFGSPPSFSRRKLASILHECGKRSSL 1183 + +Q S H SV+DA + LD + I K +F P + KLA I+H G + Sbjct: 1157 IQETLQRQYSHHSSVQDAVSQLDSELMDITKLYGEFADPFKLAECKLA-IIHCAGYSDPI 1215 Query: 1184 IDEVFVLDRYSDASSNSIAVFSDDNALSRSMKEVKNDKI 1300 + + D S+S+ + S D + S+K V KI Sbjct: 1216 LVQTLWQDIIEKELSDSVTLSSSDRMHALSLKIVLLGKI 1254
>P37199:NU155_RAT Nuclear pore complex protein Nup155 - Rattus norvegicus (Rat)| Length = 1390 Score = 34.7 bits (78), Expect = 1.5 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 1/99 (1%) Frame = +2 Query: 1007 LSRVIQNTGSGHDSVEDARAALDLAFLKI-KYGPDFGSPPSFSRRKLASILHECGKRSSL 1183 + +Q S H SV+DA + LD + I K +F P + KLA I+H G + Sbjct: 1156 IQETLQRQYSHHSSVQDAISQLDSELMDITKLYGEFADPFKLAECKLA-IIHCAGYSDPI 1214 Query: 1184 IDEVFVLDRYSDASSNSIAVFSDDNALSRSMKEVKNDKI 1300 + D S+S+ + S D + S+K V KI Sbjct: 1215 LVHTLWQDIIEKELSDSVTLSSSDRMHALSLKLVLLGKI 1253
>Q99P88:NU155_MOUSE Nuclear pore complex protein Nup155 - Mus musculus (Mouse)| Length = 1391 Score = 34.7 bits (78), Expect = 1.5 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 1/99 (1%) Frame = +2 Query: 1007 LSRVIQNTGSGHDSVEDARAALDLAFLKI-KYGPDFGSPPSFSRRKLASILHECGKRSSL 1183 + +Q S H SV+DA + LD + I K +F P + KLA ++H G + Sbjct: 1157 IQETLQRQYSHHSSVQDAISQLDSELMDITKLYGEFADPFKLAECKLA-VIHCAGYSDPI 1215 Query: 1184 IDEVFVLDRYSDASSNSIAVFSDDNALSRSMKEVKNDKI 1300 + D ++S+A+ S D + S+K V KI Sbjct: 1216 LVHTLWQDIIEKELNDSVALSSSDRMHALSLKLVLLGKI 1254
>Q9KA72:DPO3_BACHD DNA polymerase III polC-type - Bacillus halodurans| Length = 1433 Score = 33.5 bits (75), Expect = 3.3 Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 15/198 (7%) Frame = +2 Query: 548 DLEDNGYPLSL-PGFVPTVAAPSGSSPYEILGLDCEMCVTAAGFELTRVTLVDIKGEVIL 724 +L D+G P++ +P + + E GL +A ++ + V +K I+ Sbjct: 397 NLVDDGVPIAYNEAHIPLLDSEFVVFDVETTGL------SAVYNKIIELAAVKVKNGEII 450 Query: 725 DKLVK---PTNPITDYNTRFSGITAEMLSDVTTTLQEIQE--EFVGLVYKETILVGHSLE 889 D+ + P P+T+ +GIT +ML Q + E F+G + +LV H+ Sbjct: 451 DRFERFADPHEPLTNTIIELTGITDDMLKGQPEVEQVLNEFHAFIG----DAVLVAHNAS 506 Query: 890 NDL---------LALRISHDLVIDTAVLYKYNRGPRCKIALRVLANKYLSRVIQNTGSGH 1042 D+ + L + + VIDT L ++ L L K+ ++ S H Sbjct: 507 FDMGFLNTGFQKMGLGEAKNPVIDTLELGRFLYPTLKNHRLNTLCKKFDIELV----SHH 562 Query: 1043 DSVEDARAALDLAFLKIK 1096 ++ DA A L + +K Sbjct: 563 RAIYDAEATGHLLWRMVK 580
>P27434:YFGA_ECOLI Uncharacterized HTH-type transcriptional regulator yfgA -| Escherichia coli Length = 337 Score = 32.7 bits (73), Expect = 5.6 Identities = 18/52 (34%), Positives = 24/52 (46%) Frame = +2 Query: 29 APAAAPDMSTPSDGAAPAASTYYDVFGPDAKPDVIFKEATSDSTLNLQDVQG 184 A AP +T DGAAP + V P A P+ + T+D L + D G Sbjct: 221 AATPAPTAATTPDGAAPLPTDQAGVTTPVADPNALVMNFTADCWLEVTDATG 272
>Q9V050:Y948_PYRAB Uncharacterized ATP-binding protein PYRAB09480 - Pyrococcus abyssi| Length = 339 Score = 32.3 bits (72), Expect = 7.3 Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 7/112 (6%) Frame = +2 Query: 1187 DEVFVLDRYSDASSNSIAVFS--DDNALSRSMKEVKN-----DKISFVWTQFSGLISYLR 1345 D +F+ YS+A A + DD +++ +KN D+ VW F G Sbjct: 182 DSLFIERVYSEAMLQGRAEYFLVDDFKRETALRFLKNNGLSDDEAELVWNYFGG------ 235 Query: 1346 KRAEDPVKLKSCVAEAIALKTCDRKTARKRAKQICPELKGILSELDKKIRKL 1501 PV L + LK + + R QI EL + EL +K+ KL Sbjct: 236 ----KPVYLAETIKHRDELKEWCERMLKLRTSQILDELYALEKELFEKVVKL 283
>P23581:RPOC2_EUGGR DNA-directed RNA polymerase beta'' chain - Euglena gracilis| Length = 830 Score = 32.3 bits (72), Expect = 7.3 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 12/59 (20%) Frame = +2 Query: 233 VKNKPLITKVVLLY------------VPGLDAALYMSQSRLLSSLKELCGNPKPVLASS 373 +++KP I K LLY V GL + ++R+ SSLKE+ NP +L S Sbjct: 619 IEDKPFIRKNQLLYRVNFVREKTYDIVQGLPKVEKLLEARMTSSLKEIINNPHDILTES 677
>Q4FN21:TOLB_PELUB Protein tolB precursor - Pelagibacter ubique| Length = 446 Score = 32.0 bits (71), Expect = 9.5 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = +2 Query: 713 EVILDKLVKPTNPITDYNTRFSGITAEMLSDVTTTLQEIQEEFVGLVY 856 E++L PTN + Y + F + L D+ T +QE+ +F G+ + Sbjct: 208 ELVLTPRFSPTNQMVTYLSYFRNLPRVYLLDIETGMQEVVGDFPGMTF 255
>O96838:FYV1_DROME Putative FYVE finger-containing phosphoinositide kinase - Drosophila| melanogaster (Fruit fly) Length = 1809 Score = 32.0 bits (71), Expect = 9.5 Identities = 18/69 (26%), Positives = 34/69 (49%) Frame = +2 Query: 1433 RAKQICPELKGILSELDKKIRKLHDTLPENAMFIICTGHGDTPLVQRLKKMLNHGEKTVD 1612 ++ Q+ E+K + + ++H+ + + + T ++PLVQ LK ML H + Sbjct: 1148 QSAQVQEEIKNFSIKGHEVYNRIHERIAD-----LATEEENSPLVQHLKTMLTHDQFIFK 1202 Query: 1613 SRENIVHAL 1639 + IVH L Sbjct: 1203 QKIEIVHTL 1211
>Q9BL02:CUT_CAEEL Homeobox protein cut-like ceh-44 - Caenorhabditis elegans| Length = 1273 Score = 32.0 bits (71), Expect = 9.5 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 1/133 (0%) Frame = +2 Query: 1262 LSRSMKEVKNDKISFVWTQFSGLISYLRKRAEDP-VKLKSCVAEAIALKTCDRKTARKRA 1438 +SR+ + V D+I T+ ++ L +R +D ++ V E+ A + K +RK A Sbjct: 4 VSRAWESVDWDRIQ---TRVEAEVTALGQRQDDSEIRKTRLVEESNAYRGRTNKDSRKVA 60 Query: 1439 KQICPELKGILSELDKKIRKLHDTLPENAMFIICTGHGDTPLVQRLKKMLNHGEKTVDSR 1618 P +K SE D + + T ENA+ IC P + L K + + Sbjct: 61 ---IPLIKAFQSEFDGLLAR--STAAENALIDICKSIVSLPDPKSLLKGAEAWKNDAEKT 115 Query: 1619 ENIVHALEDLQAQ 1657 + V E+L+ Q Sbjct: 116 QKAVEEREELKRQ 128
>Q8IA98:CASP_CAEEL Protein CASP - Caenorhabditis elegans| Length = 621 Score = 32.0 bits (71), Expect = 9.5 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 1/133 (0%) Frame = +2 Query: 1262 LSRSMKEVKNDKISFVWTQFSGLISYLRKRAEDP-VKLKSCVAEAIALKTCDRKTARKRA 1438 +SR+ + V D+I T+ ++ L +R +D ++ V E+ A + K +RK A Sbjct: 4 VSRAWESVDWDRIQ---TRVEAEVTALGQRQDDSEIRKTRLVEESNAYRGRTNKDSRKVA 60 Query: 1439 KQICPELKGILSELDKKIRKLHDTLPENAMFIICTGHGDTPLVQRLKKMLNHGEKTVDSR 1618 P +K SE D + + T ENA+ IC P + L K + + Sbjct: 61 ---IPLIKAFQSEFDGLLAR--STAAENALIDICKSIVSLPDPKSLLKGAEAWKNDAEKT 115 Query: 1619 ENIVHALEDLQAQ 1657 + V E+L+ Q Sbjct: 116 QKAVEEREELKRQ 128 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 353,282,714 Number of extensions: 8006451 Number of successful extensions: 22506 Number of sequences better than 10.0: 63 Number of HSP's gapped: 22422 Number of HSP's successfully gapped: 64 Length of query: 646 Length of database: 100,686,439 Length adjustment: 120 Effective length of query: 526 Effective length of database: 67,771,039 Effective search space: 35647566514 Effective search space used: 35647566514 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
