ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf85h08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001072864.1| Oryza sativa (japonica cultivar-group) Os12g0188900 (Os12g0188900) mRNA, complete cds Length = 1182 Score = 821 bits (414), Expect = 0.0 Identities = 887/1044 (84%), Gaps = 3/1044 (0%) Strand = Plus / Plus Query: 656 tgtgtgacagcagctggatttgaacttacgagagtaacattagtcgatattaaaggagag 715 ||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 139 tgtgttactgcagctggatttgaacttacaagagtaacattagttgatattaaaggagag 198 Query: 716 gtgatactggataaactagtcaagcctaccaatccaatcactgattacaatacaaggttt 775 ||| | || ||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 199 gtggtgctagataaactagttaagcctgccaatccaatcactgattacaatacaaggttc 258 Query: 776 agtggaatcactgctgagatgctatccgatgtgacaacaaccctccaggagattcaggaa 835 ||||||||||||||||| ||| || | ||||| || ||||||||||||||||||||||| Sbjct: 259 agtggaatcactgctgaaatgttagctgatgttaccacaaccctccaggagattcaggag 318 Query: 836 gagtttgttgggcttgtgtacaaagaaactattcttgttgggcattctttggaaaatgac 895 ||||||||||| |||||| ||||||||||| |||||||||| ||||||||||||||||| Sbjct: 319 gagtttgttggacttgtgcacaaagaaactgttcttgttggacattctttggaaaatgat 378 Query: 896 cttttggcattacggatatctcatgacttggtcattgatactgcagttttgtacaaatat 955 ||| ||||||| |||||||| || || ||| |||||||||||||||||||||||||| || Sbjct: 379 cttatggcattgcggatatcccacgatttgatcattgatactgcagttttgtacaaacat 438 Query: 956 aatcgtggcccacgctgcaaaattgctttacgtgtcctggcaaacaaatatcttagccgg 1015 |||||||||| |||| || || |||||||||||||||||||| || | ||||| |||| Sbjct: 439 aatcgtggccatcgctttaagatcgctttacgtgtcctggcaaaaaagtttcttaaccgg 498 Query: 1016 gtgatccagaacactgggtctgggcatgacagtgtggaagatgcaagagctgctctggat 1075 | |||||||||||||||||||||||||||||||||||| ||||| | ||||||||| || Sbjct: 499 gagatccagaacactgggtctgggcatgacagtgtggaggatgctaaagctgctctagaa 558 Query: 1076 cttgcctttttgaaaatcaaatatggtcctgattttggctctccaccatcgttttcacgg 1135 || || || |||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct: 559 ctcgctttattgaaaatcaaatatggtcctgattttggctccccaccatcaacttcacga 618 Query: 1136 agaaagttggcttccattctgcatgaatgtgggaaaaggagttcactcattgatgaagtg 1195 |||||||||||||||| ||||||||| |||| |||| | || ||||||||||| | Sbjct: 619 cgaaagttggcttccatactgcatgaaagtggtaaaaaatgctccctcattgatgacgcc 678 Query: 1196 tttgttcttgaccgctattcagatgcttccagcaattcaattgcagttttctcagatgat 1255 | |||||||| || |||||||||||||| | |||||||| |||||||||||||||||| Sbjct: 679 tccgttcttgagcggtattcagatgcttcttgtaattcaatagcagttttctcagatgat 738 Query: 1256 aatgccctctccagatcaatgaaagaggtaaagaatgacaaaatcagctttgtctggacc 1315 |||| || || |||||||||||||||||||| ||||||||| | || ||||||||||| Sbjct: 739 gatgcactatctagatcaatgaaagaggtaaaaaatgacaaagttagttttgtctggact 798 Query: 1316 cagttttcaggattgatctcttatctacgtaaaagagccgaagatcctgtaaaattgaaa 1375 || || || ||||||||| ||||| |||| ||| ||| ||||||| | || ||||| Sbjct: 799 caattctcgaaattgatctcgtatcttcgtacaagggcccaagatcccgataaggtgaaa 858 Query: 1376 tcctgtgttgcagaggctattgcattgaaaacatgtgatagaaaaactgcccggaaaaga 1435 || |||||||||||||||||||||||| | || || || ||||||||||| | ||||||| Sbjct: 859 tcgtgtgttgcagaggctattgcattgcagacctgcgacagaaaaactgctcagaaaaga 918 Query: 1436 gcaa---aacaaatttgtccagagctgaagggaattttgagtgaattggacaagaaaatt 1492 || | |||| |||||| || || |||| |||| ||| || ||||||||||||||| Sbjct: 919 aaaaagcatcaaacttgtcctgaactaaaggaaattctgattgggttggacaagaaaatt 978 Query: 1493 agaaaactacatgatacactgcctgaaaatgcaatgttcattatatgtaccggtcatggg 1552 |||||| || | | | ||||| ||||||||| | |||||||||| |||||||| Sbjct: 979 agaaaattatacagcatcttacctgataatgcaatgcttattatatgtagtggtcatggt 1038 Query: 1553 gatactcctttggtacaaagattaaagaaaatgctcaaccacggagaaaaaacagtcgat 1612 ||||| |||||||| ||||||||| ||||||||| || || | |||| ||||||| || Sbjct: 1039 gatacacctttggtgcaaagattacggaaaatgcttaagcaagaagaagaaacagtagaa 1098 Query: 1613 agccgggaaaatattgtccatgcattggaagatttacaggcccaagcagaagttgctcta 1672 ||||| |||| ||||| | |||||||||||| |||| ||||| ||||||||||||||| Sbjct: 1099 agccgcgaaagcattgttaaagcattggaagatatacaagcccaggcagaagttgctcta 1158 Query: 1673 tgcttctgttgtgtcaagcattag 1696 ||||||||||||||||| |||||| Sbjct: 1159 tgcttctgttgtgtcaaacattag 1182 Score = 91.7 bits (46), Expect = 9e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 173 gatgtccaggggctagtaacttgggttattggtgaaggcatgccgccttcatgggtgttt 232 ||||| |||||||||||||||||||| |||||||| ||||||| |||||| ||||||||| Sbjct: 73 gatgttcaggggctagtaacttgggtcattggtgatggcatgctgccttcttgggtgttt 132 Query: 233 gttaaa 238 |||||| Sbjct: 133 gttaaa 138 Score = 56.0 bits (28), Expect = 5e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 61 ctccgacggagccgcccccgctgcctctacgtactacgacgtcttcggtcccgacg 116 ||||| || |||||||||||| |||| |||||||||||||||| ||| ||||||| Sbjct: 18 ctccggcgaagccgcccccgcctcctccacgtactacgacgtctacggacccgacg 73
>dbj|AK242871.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J090076M01, full insert sequence Length = 2189 Score = 739 bits (373), Expect = 0.0 Identities = 682/785 (86%) Strand = Plus / Plus Query: 500 ctaaaagatataccattttctgttaaatattacacactttctaaaaaggacttggaagat 559 ||||| |||||||| ||| || ||||||||||||| |||||| |||| |||||||| || Sbjct: 555 ctaaaggatataccgtttcctattaaatattacacgctttctgaaaaagacttggaggac 614 Query: 560 aatggctacccactcagtttaccaggttttgtccctacggttgcagctccttcaggctct 619 ||||| ||| |||||||| ||||||||||||||| ||| |||||||| |||||||| Sbjct: 615 aatggatacaacttcagtttagaaggttttgtccctactgtttcagctcctccaggctct 674 Query: 620 tccccatacgaaatcctcggacttgattgtgagatgtgtgtgacagcagctggatttgaa 679 || ||||| | ||| || | |||||| |||||||||||||| || ||||||||||||||| Sbjct: 675 tcgccatatgcaattcttgcacttgactgtgagatgtgtgttactgcagctggatttgaa 734 Query: 680 cttacgagagtaacattagtcgatattaaaggagaggtgatactggataaactagtcaag 739 ||||| |||||||||||||| |||||||||||||||||| | || ||||||||||| ||| Sbjct: 735 cttacaagagtaacattagttgatattaaaggagaggtggtgctagataaactagttaag 794 Query: 740 cctaccaatccaatcactgattacaatacaaggtttagtggaatcactgctgagatgcta 799 ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| || Sbjct: 795 cctgccaatccaatcactgattacaatacaaggttcagtggaatcactgctgaaatgtta 854 Query: 800 tccgatgtgacaacaaccctccaggagattcaggaagagtttgttgggcttgtgtacaaa 859 | ||||| || ||||||||||||||||||||||| ||||||||||| |||||| ||||| Sbjct: 855 gctgatgttaccacaaccctccaggagattcaggaggagtttgttggacttgtgcacaaa 914 Query: 860 gaaactattcttgttgggcattctttggaaaatgaccttttggcattacggatatctcat 919 |||||| |||||||||| ||||||||||||||||| ||| ||||||| |||||||| || Sbjct: 915 gaaactgttcttgttggacattctttggaaaatgatcttatggcattgcggatatcccac 974 Query: 920 gacttggtcattgatactgcagttttgtacaaatataatcgtggcccacgctgcaaaatt 979 || ||| |||||||||||||||||||||||||| |||||||||||| |||| || || Sbjct: 975 gatttgatcattgatactgcagttttgtacaaacataatcgtggccatcgctttaagatc 1034 Query: 980 gctttacgtgtcctggcaaacaaatatcttagccgggtgatccagaacactgggtctggg 1039 |||||||||||||||||||| || | ||||| ||||| |||||||||||||||||||||| Sbjct: 1035 gctttacgtgtcctggcaaaaaagtttcttaaccgggagatccagaacactgggtctggg 1094 Query: 1040 catgacagtgtggaagatgcaagagctgctctggatcttgcctttttgaaaatcaaatat 1099 |||||||||||||| ||||| | ||||||||| || || || || ||||||||||||||| Sbjct: 1095 catgacagtgtggaggatgctaaagctgctctagaactcgctttattgaaaatcaaatat 1154 Query: 1100 ggtcctgattttggctctccaccatcgttttcacggagaaagttggcttccattctgcat 1159 ||||||||||||||||| |||||||| |||||| |||||||||||||||| |||||| Sbjct: 1155 ggtcctgattttggctccccaccatcaacttcacgacgaaagttggcttccatactgcat 1214 Query: 1160 gaatgtgggaaaaggagttcactcattgatgaagtgtttgttcttgaccgctattcagat 1219 ||| |||| |||| | || ||||||||||| | | |||||||| || ||||||||| Sbjct: 1215 gaaagtggtaaaaaatgctccctcattgatgacgcctccgttcttgagcggtattcagat 1274 Query: 1220 gcttccagcaattcaattgcagttttctcagatgataatgccctctccagatcaatgaaa 1279 ||||| | |||||||| |||||||||||||||||| |||| || || |||||||||||| Sbjct: 1275 gcttcttgtaattcaatagcagttttctcagatgatgatgcactatctagatcaatgaaa 1334 Query: 1280 gaggt 1284 ||||| Sbjct: 1335 gaggt 1339 Score = 452 bits (228), Expect = e-123 Identities = 342/380 (90%), Gaps = 5/380 (1%) Strand = Plus / Plus Query: 61 ctccgacggagccgcccccgctgcctctacgtactacgacgtcttcggtcccgacgctaa 120 ||||| || |||||||||||| |||| |||||||||||||||| ||| ||||||||||| Sbjct: 108 ctccggcgaagccgcccccgcctcctccacgtactacgacgtctacggacccgacgctaa 167 Query: 121 acctgatgttatttttaaggaggccacgtcagattccacattgaatt-----tgcaggat 175 |||||||||| |||||||||||||||| ||| |||| || || |||| |||||||| Sbjct: 168 acctgatgttgtttttaaggaggccacttcaaattctacgttaaatttgcagtgcaggat 227 Query: 176 gtccaggggctagtaacttgggttattggtgaaggcatgccgccttcatgggtgtttgtt 235 || |||||||||||||||||||| |||||||| ||||||| |||||| |||||||||||| Sbjct: 228 gttcaggggctagtaacttgggtcattggtgatggcatgctgccttcttgggtgtttgtt 287 Query: 236 aaaaacaagcctcttatcacaaaagttgtccttctctatgttcctggcctcgatgcagct 295 ||||||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||| Sbjct: 288 aaaaacaagcctcttataccaaaagtcgtccttctatatgttcctggccttgatgcagct 347 Query: 296 ttatacatgtctcagtcacgcctcctttcttctttgaaagaattgtgtggcaatccaaaa 355 ||||| ||||| || || || | ||||||||||||||||||||| ||||||||||||||| Sbjct: 348 ttatatatgtcgcaatcccgtcacctttcttctttgaaagaattttgtggcaatccaaaa 407 Query: 356 cctgttctagcttcaagctgtataccagatgaaaggcataccattgacgcactcctgaca 415 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||| Sbjct: 408 cctgttctagcttcaagctgtataccagatgaaaggcataccatcgatgcactcctaaca 467 Query: 416 tgcagagtaaagcgaaagcg 435 |||||||||||||||||||| Sbjct: 468 tgcagagtaaagcgaaagcg 487 Score = 198 bits (100), Expect = 5e-47 Identities = 342/422 (81%), Gaps = 3/422 (0%) Strand = Plus / Plus Query: 1281 aggtaaagaatgacaaaatcagctttgtctggacccagttttcaggattgatctcttatc 1340 ||||||| ||||||||| | || ||||||||||| || || || ||||||||| |||| Sbjct: 1424 aggtaaaaaatgacaaagttagttttgtctggactcaattctcgaaattgatctcgtatc 1483 Query: 1341 tacgtaaaagagccgaagatcctgtaaaattgaaatcctgtgttgcagaggctattgcat 1400 | |||| ||| ||| ||||||| | || ||||||| |||||||||||||||||||||| Sbjct: 1484 ttcgtacaagggcccaagatcccgataaggtgaaatcgtgtgttgcagaggctattgcat 1543 Query: 1401 tgaaaacatgtgatagaaaaactgcccggaaaagagcaaaaca---aatttgtccagagc 1457 || | || || || ||||||||||| | ||||||| ||| || || |||||| || | Sbjct: 1544 tgcagacctgcgacagaaaaactgctcagaaaagaaaaaagcatcaaacttgtcctgaac 1603 Query: 1458 tgaagggaattttgagtgaattggacaagaaaattagaaaactacatgatacactgcctg 1517 | |||| |||| ||| || ||||||||||||||||||||| || | | | |||| Sbjct: 1604 taaaggaaattctgattgggttggacaagaaaattagaaaattatacagcatcttacctg 1663 Query: 1518 aaaatgcaatgttcattatatgtaccggtcatggggatactcctttggtacaaagattaa 1577 | ||||||||| | |||||||||| |||||||| ||||| |||||||| ||||||||| Sbjct: 1664 ataatgcaatgcttattatatgtagtggtcatggtgatacacctttggtgcaaagattac 1723 Query: 1578 agaaaatgctcaaccacggagaaaaaacagtcgatagccgggaaaatattgtccatgcat 1637 ||||||||| || || | |||| ||||||| || ||||| |||| ||||| | |||| Sbjct: 1724 ggaaaatgcttaagcaagaagaagaaacagtagaaagccgcgaaagcattgttaaagcat 1783 Query: 1638 tggaagatttacaggcccaagcagaagttgctctatgcttctgttgtgtcaagcattagc 1697 |||||||| |||| ||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct: 1784 tggaagatatacaagcccaggcagaagttgctctatgcttctgttgtgtcaaacattagc 1843 Query: 1698 tg 1699 || Sbjct: 1844 tg 1845
>emb|CT835559.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI237F13, full insert sequence Length = 2102 Score = 496 bits (250), Expect = e-136 Identities = 397/446 (89%) Strand = Plus / Plus Query: 655 gtgtgtgacagcagctggatttgaacttacgagagtaacattagtcgatattaaaggaga 714 |||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 751 gtgtgttactgcagctggatttgaacttacaagagtaacattagttgatattaaaggaga 810 Query: 715 ggtgatactggataaactagtcaagcctaccaatccaatcactgattacaatacaaggtt 774 |||| | || ||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 811 ggtggtgctagataaactagttaagcctgccaatccaatcactgattacaatacaaggtt 870 Query: 775 tagtggaatcactgctgagatgctatccgatgtgacaacaaccctccaggagattcagga 834 ||||||||||||||||| ||| || | ||||| || ||||||||||||||||||||||| Sbjct: 871 cagtggaatcactgctgaaatgttagctgatgttaccacaaccctccaggagattcagga 930 Query: 835 agagtttgttgggcttgtgtacaaagaaactattcttgttgggcattctttggaaaatga 894 ||||||||||| |||||| ||||||||||| | |||||||| ||||||||||||||||| Sbjct: 931 ggagtttgttggtcttgtgcacaaagaaactgtacttgttggacattctttggaaaatga 990 Query: 895 ccttttggcattacggatatctcatgacttggtcattgatactgcagttttgtacaaata 954 ||| ||||||| |||||||| || || ||| |||||||||||||||||||||||||| | Sbjct: 991 tcttatggcattgcggatatcccacgatttgatcattgatactgcagttttgtacaaaca 1050 Query: 955 taatcgtggcccacgctgcaaaattgctttacgtgtcctggcaaacaaatatcttagccg 1014 ||||||||||| |||| || || |||||||||||||||||||| || | ||||| ||| Sbjct: 1051 taatcgtggccatcgctttaagatcgctttacgtgtcctggcaaaaaagtttcttaaccg 1110 Query: 1015 ggtgatccagaacactgggtctgggcatgacagtgtggaagatgcaagagctgctctgga 1074 || |||||||||||||||||||||||||||||||||||| ||||| | ||||||||| || Sbjct: 1111 ggagatccagaacactgggtctgggcatgacagtgtggaggatgctaaagctgctctaga 1170 Query: 1075 tcttgcctttttgaaaatcaaatatg 1100 || || || |||||||||||||||| Sbjct: 1171 actcgctttattgaaaatcaaatatg 1196 Score = 490 bits (247), Expect = e-134 Identities = 343/375 (91%) Strand = Plus / Plus Query: 61 ctccgacggagccgcccccgctgcctctacgtactacgacgtcttcggtcccgacgctaa 120 ||||| || |||||||||||| |||| |||||||||||||||| ||| ||||||||||| Sbjct: 71 ctccggcgaagccgcccccgcctcctccacgtactacgacgtctacggacccgacgctaa 130 Query: 121 acctgatgttatttttaaggaggccacgtcagattccacattgaatttgcaggatgtcca 180 |||||||||| |||||||||||||||| ||| |||| ||||| |||||||||||||| || Sbjct: 131 acctgatgttgtttttaaggaggccacttcaaattctacattaaatttgcaggatgttca 190 Query: 181 ggggctagtaacttgggttattggtgaaggcatgccgccttcatgggtgtttgttaaaaa 240 |||||||||||||||||| |||||||| ||||||| |||||| ||||||||||||||||| Sbjct: 191 ggggctagtaacttgggtcattggtgatggcatgctgccttcttgggtgtttgttaaaaa 250 Query: 241 caagcctcttatcacaaaagttgtccttctctatgttcctggcctcgatgcagctttata 300 |||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||| Sbjct: 251 caagcctcttataccaaaagtcgtccttctatatgttcctggccttgatgcagctttata 310 Query: 301 catgtctcagtcacgcctcctttcttctttgaaagaattgtgtggcaatccaaaacctgt 360 ||||| || || || | ||||||||||||||||||||| |||||||||||||||||||| Sbjct: 311 tatgtcgcaatcccgtcacctttcttctttgaaagaattttgtggcaatccaaaacctgt 370 Query: 361 tctagcttcaagctgtataccagatgaaaggcataccattgacgcactcctgacatgcag 420 ||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| Sbjct: 371 tctagcttcaagctgtataccagatgaaaggcataccatcgatgcactcctaacatgcag 430 Query: 421 agtaaagcgaaagcg 435 ||||||||||||||| Sbjct: 431 agtaaagcgaaagcg 445 Score = 196 bits (99), Expect = 2e-46 Identities = 296/361 (81%), Gaps = 3/361 (0%) Strand = Plus / Plus Query: 1141 gttggcttccattctgcatgaatgtgggaaaaggagttcactcattgatgaagtgtttgt 1200 |||||||||||| |||||||||||||| |||| | || ||||||||||| | | || Sbjct: 1196 gttggcttccatactgcatgaatgtggtaaaaaatgctccctcattgatgacgcctccgt 1255 Query: 1201 tcttgaccgctattcagatgcttccagcaattcaattgcagttttctcagatgataatgc 1260 |||||| || |||||||||||||| | |||||||| |||||||||||||||||| |||| Sbjct: 1256 tcttgagcggtattcagatgcttcttgtaattcaatagcagttttctcagatgatgatgc 1315 Query: 1261 cctctccagatcaatgaaagaggtaaagaatgacaaaatcagctttgtctggacccagtt 1320 || || |||||||||||||||||||| ||||||||| | || ||||||||||| || || Sbjct: 1316 actatctagatcaatgaaagaggtaaaaaatgacaaagttagttttgtctggactcaatt 1375 Query: 1321 ttcaggattgatctcttatctacgtaaaagagccgaagatcctgtaaaattgaaatcctg 1380 || ||||||||| ||||| |||| ||| ||| ||||||| | || ||||||| || Sbjct: 1376 ctcgaaattgatctcgtatcttcgtacaagggcccaagatcccgataaggtgaaatcgtg 1435 Query: 1381 tgttgcagaggctattgcattgaaaacatgtgatagaaaaactgcccggaaaagagcaa- 1439 |||||||||||||||||||||| | || || || ||||||||||| | ||||||| || Sbjct: 1436 tgttgcagaggctattgcattgcagacctgcgacagaaaaactgctcagaaaagaaaaaa 1495 Query: 1440 --aacaaatttgtccagagctgaagggaattttgagtgaattggacaagaaaattagaaa 1497 | |||| |||||| || || |||| |||| ||| || |||||||||||||||||||| Sbjct: 1496 gcatcaaacttgtcctgaactaaaggaaattctgattgggttggacaagaaaattagaaa 1555 Query: 1498 a 1498 | Sbjct: 1556 a 1556 Score = 155 bits (78), Expect = 7e-34 Identities = 159/186 (85%) Strand = Plus / Plus Query: 1514 cctgaaaatgcaatgttcattatatgtaccggtcatggggatactcctttggtacaaaga 1573 ||||| ||||||||| | |||||||||| |||||||| ||||| |||||||| |||||| Sbjct: 1572 cctgataatgcaatgcttattatatgtagtggtcatggtgatacacctttggtgcaaaga 1631 Query: 1574 ttaaagaaaatgctcaaccacggagaaaaaacagtcgatagccgggaaaatattgtccat 1633 ||| ||||||||| || || | |||| ||||||| || ||||| |||| ||||| | Sbjct: 1632 ttacggaaaatgcttaagcaagaagaagaaacagtagaaagccgcgaaagcattgttaaa 1691 Query: 1634 gcattggaagatttacaggcccaagcagaagttgctctatgcttctgttgtgtcaagcat 1693 |||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| ||| Sbjct: 1692 gcattggaagatatacaagcccaggcagaagttgctctatgcttctgttgtgtcaaacat 1751 Query: 1694 tagctg 1699 |||||| Sbjct: 1752 tagctg 1757 Score = 111 bits (56), Expect = 1e-20 Identities = 134/160 (83%) Strand = Plus / Plus Query: 497 gacctaaaagatataccattttctgttaaatattacacactttctaaaaaggacttggaa 556 |||||||| |||||||| ||| || ||||||||||||| |||||| |||| |||||||| Sbjct: 510 gacctaaaggatataccgtttcctattaaatattacacgctttctgaaaaagacttggag 569 Query: 557 gataatggctacccactcagtttaccaggttttgtccctacggttgcagctccttcaggc 616 || ||||| ||| |||||||| ||||||||||||||| ||| |||||||| ||||| Sbjct: 570 gacaatggatacaacttcagtttagaaggttttgtccctactgtttcagctcctccaggc 629 Query: 617 tcttccccatacgaaatcctcggacttgattgtgagatgt 656 ||||| ||||| | ||| || | |||||| |||||||||| Sbjct: 630 tcttcgccatatgcaattcttgcacttgactgtgagatgt 669
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 291 bits (147), Expect = 5e-75 Identities = 243/275 (88%) Strand = Plus / Plus Query: 828 ttcaggaagagtttgttgggcttgtgtacaaagaaactattcttgttgggcattctttgg 887 ||||||| ||||||||||| |||||| ||||||||||| |||||||||| |||||||||| Sbjct: 4472804 ttcaggaggagtttgttggacttgtgcacaaagaaactgttcttgttggacattctttgg 4472863 Query: 888 aaaatgaccttttggcattacggatatctcatgacttggtcattgatactgcagttttgt 947 ||||||| ||| ||||||| |||||||| || || ||| ||||||||||||||||||||| Sbjct: 4472864 aaaatgatcttatggcattgcggatatcccacgatttgatcattgatactgcagttttgt 4472923 Query: 948 acaaatataatcgtggcccacgctgcaaaattgctttacgtgtcctggcaaacaaatatc 1007 ||||| |||||||||||| |||| || || |||||||||||||||||||| || | || Sbjct: 4472924 acaaacataatcgtggccatcgctttaagatcgctttacgtgtcctggcaaaaaagtttc 4472983 Query: 1008 ttagccgggtgatccagaacactgggtctgggcatgacagtgtggaagatgcaagagctg 1067 ||| ||||| |||||||||||||||||||||||||||||||||||| ||||| | ||||| Sbjct: 4472984 ttaaccgggagatccagaacactgggtctgggcatgacagtgtggaggatgctaaagctg 4473043 Query: 1068 ctctggatcttgcctttttgaaaatcaaatatggt 1102 |||| || || || || |||||||||||||||||| Sbjct: 4473044 ctctagaactcgctttattgaaaatcaaatatggt 4473078 Score = 170 bits (86), Expect = 1e-38 Identities = 122/134 (91%) Strand = Plus / Plus Query: 239 aacaagcctcttatcacaaaagttgtccttctctatgttcctggcctcgatgcagcttta 298 |||||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||| Sbjct: 4470808 aacaagcctcttataccaaaagtcgtccttctatatgttcctggccttgatgcagcttta 4470867 Query: 299 tacatgtctcagtcacgcctcctttcttctttgaaagaattgtgtggcaatccaaaacct 358 || ||||| || || || | ||||||||||||||||||||| |||||||||||||||||| Sbjct: 4470868 tatatgtcgcaatcccgtcacctttcttctttgaaagaattttgtggcaatccaaaacct 4470927 Query: 359 gttctagcttcaag 372 |||||||||||||| Sbjct: 4470928 gttctagcttcaag 4470941 Score = 137 bits (69), Expect = 2e-28 Identities = 156/185 (84%) Strand = Plus / Plus Query: 1100 ggtcctgattttggctctccaccatcgttttcacggagaaagttggcttccattctgcat 1159 ||||||||||||||||| |||||||| |||||| |||||||||||||||| |||||| Sbjct: 4473173 ggtcctgattttggctccccaccatcaacttcacgacgaaagttggcttccatactgcat 4473232 Query: 1160 gaatgtgggaaaaggagttcactcattgatgaagtgtttgttcttgaccgctattcagat 1219 ||| |||| |||| | || ||||||||||| | | |||||||| || ||||||||| Sbjct: 4473233 gaaagtggtaaaaaatgctccctcattgatgacgcctccgttcttgagcggtattcagat 4473292 Query: 1220 gcttccagcaattcaattgcagttttctcagatgataatgccctctccagatcaatgaaa 1279 ||||| | |||||||| |||||||||||||||||| |||| || || |||||||||||| Sbjct: 4473293 gcttcttgtaattcaatagcagttttctcagatgatgatgcactatctagatcaatgaaa 4473352 Query: 1280 gaggt 1284 ||||| Sbjct: 4473353 gaggt 4473357 Score = 113 bits (57), Expect = 2e-21 Identities = 108/125 (86%) Strand = Plus / Plus Query: 1579 gaaaatgctcaaccacggagaaaaaacagtcgatagccgggaaaatattgtccatgcatt 1638 ||||||||| || || | |||| ||||||| || ||||| |||| ||||| | ||||| Sbjct: 4473849 gaaaatgcttaagcaagaagaagaaacagtagaaagccgcgaaagcattgttaaagcatt 4473908 Query: 1639 ggaagatttacaggcccaagcagaagttgctctatgcttctgttgtgtcaagcattagct 1698 ||||||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct: 4473909 ggaagatatacaagcccaggcagaagttgctctatgcttctgttgtgtcaaacattagct 4473968 Query: 1699 gtaag 1703 ||||| Sbjct: 4473969 gtaag 4473973 Score = 105 bits (53), Expect = 6e-19 Identities = 62/65 (95%) Strand = Plus / Plus Query: 371 agctgtataccagatgaaaggcataccattgacgcactcctgacatgcagagtaaagcga 430 ||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| Sbjct: 4471071 agctgtataccagatgaaaggcataccatcgatgcactcctaacatgcagagtaaagcga 4471130 Query: 431 aagcg 435 ||||| Sbjct: 4471131 aagcg 4471135 Score = 101 bits (51), Expect = 9e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 168 tgcaggatgtccaggggctagtaacttgggttattggtgaaggcatgccgccttcatggg 227 |||||||||| |||||||||||||||||||| |||||||| ||||||| |||||| |||| Sbjct: 4470047 tgcaggatgttcaggggctagtaacttgggtcattggtgatggcatgctgccttcttggg 4470106 Query: 228 tgtttgttaaa 238 ||||||||||| Sbjct: 4470107 tgtttgttaaa 4470117 Score = 97.6 bits (49), Expect = 1e-16 Identities = 234/295 (79%), Gaps = 3/295 (1%) Strand = Plus / Plus Query: 1281 aggtaaagaatgacaaaatcagctttgtctggacccagttttcaggattgatctcttatc 1340 ||||||| ||||||||| | || ||||||||||| || || || ||||||||| |||| Sbjct: 4473442 aggtaaaaaatgacaaagttagttttgtctggactcaattctcgaaattgatctcgtatc 4473501 Query: 1341 tacgtaaaagagccgaagatcctgtaaaattgaaatcctgtgttgcagaggctattgcat 1400 | |||| ||| ||| ||||||| | || ||||||| |||||||||||||||||||||| Sbjct: 4473502 ttcgtacaagggcccaagatcccgataaggtgaaatcgtgtgttgcagaggctattgcat 4473561 Query: 1401 tgaaaacatgtgatagaaaaactgcccggaaaagagcaa---aacaaatttgtccagagc 1457 || | || || || ||||||||||| | ||||||| || | |||| |||||| || | Sbjct: 4473562 tgcagacctgcgacagaaaaactgctcagaaaagaaaaaagcatcaaacttgtcctgaac 4473621 Query: 1458 tgaagggaattttgagtgaattggacaagaaaattagaaaactacatgatacactgcctg 1517 | |||| |||| ||| || ||||||||||||||||||||| || | | | |||| Sbjct: 4473622 taaaggaaattctgattgggttggacaagaaaattagaaaattatacagcatcttacctg 4473681 Query: 1518 aaaatgcaatgttcattatatgtaccggtcatggggatactcctttggtacaaag 1572 | ||||||||| | |||||||||| |||||||| ||||| |||||||| ||||| Sbjct: 4473682 ataatgcaatgcttattatatgtagtggtcatggtgatacacctttggtgcaaag 4473736 Score = 93.7 bits (47), Expect = 2e-15 Identities = 59/63 (93%) Strand = Plus / Plus Query: 655 gtgtgtgacagcagctggatttgaacttacgagagtaacattagtcgatattaaaggaga 714 |||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 4472125 gtgtgttactgcagctggatttgaacttacaagagtaacattagttgatattaaaggaga 4472184 Query: 715 ggt 717 ||| Sbjct: 4472185 ggt 4472187 Score = 81.8 bits (41), Expect = 9e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 725 gataaactagtcaagcctaccaatccaatcactgattacaatacaaggt 773 ||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct: 4472273 gataaactagttaagcctgccaatccaatcactgattacaatacaaggt 4472321 Score = 71.9 bits (36), Expect = 8e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 770 aggtttagtggaatcactgctgagatgctatccgatgtgacaacaaccctccaggagatt 829 ||||| ||||||||||||||||| ||| || | ||||| || |||||||||||||||||| Sbjct: 4472661 aggttcagtggaatcactgctgaaatgttagctgatgttaccacaaccctccaggagatt 4472720 Query: 830 cagg 833 |||| Sbjct: 4472721 cagg 4472724 Score = 67.9 bits (34), Expect = 1e-07 Identities = 52/58 (89%) Strand = Plus / Plus Query: 116 gctaaacctgatgttatttttaaggaggccacgtcagattccacattgaatttgcagg 173 ||||||||||||||| |||||||||||||||| ||| |||| || || |||||||||| Sbjct: 4469911 gctaaacctgatgttgtttttaaggaggccacttcaaattctacgttaaatttgcagg 4469968 Score = 65.9 bits (33), Expect = 5e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 583 aggttttgtccctacggttgcagctccttcaggctcttccccatacgaaatcctcggact 642 ||||||||||||||| ||| |||||||| |||||||||| ||||| | ||| || | ||| Sbjct: 4471877 aggttttgtccctactgtttcagctcctccaggctcttcgccatatgcaattcttgcact 4471936 Query: 643 tgattgtgagatg 655 ||| ||||||||| Sbjct: 4471937 tgactgtgagatg 4471949 Score = 58.0 bits (29), Expect = 1e-04 Identities = 56/65 (86%) Strand = Plus / Plus Query: 500 ctaaaagatataccattttctgttaaatattacacactttctaaaaaggacttggaagat 559 ||||| |||||||| ||| || ||||||||||||| |||||| |||| |||||||| || Sbjct: 4471718 ctaaaggatataccgtttcctattaaatattacacgctttctgaaaaagacttggaggac 4471777 Query: 560 aatgg 564 ||||| Sbjct: 4471778 aatgg 4471782 Score = 56.0 bits (28), Expect = 5e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 61 ctccgacggagccgcccccgctgcctctacgtactacgacgtcttcggtcccgacg 116 ||||| || |||||||||||| |||| |||||||||||||||| ||| ||||||| Sbjct: 4469026 ctccggcgaagccgcccccgcctcctccacgtactacgacgtctacggacccgacg 4469081
>emb|AL954157.3|CNS08CCV Oryza sativa chromosome 12, . BAC OSJNBa0042N11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 168699 Score = 291 bits (147), Expect = 5e-75 Identities = 243/275 (88%) Strand = Plus / Minus Query: 828 ttcaggaagagtttgttgggcttgtgtacaaagaaactattcttgttgggcattctttgg 887 ||||||| ||||||||||| |||||| ||||||||||| |||||||||| |||||||||| Sbjct: 31692 ttcaggaggagtttgttggacttgtgcacaaagaaactgttcttgttggacattctttgg 31633 Query: 888 aaaatgaccttttggcattacggatatctcatgacttggtcattgatactgcagttttgt 947 ||||||| ||| ||||||| |||||||| || || ||| ||||||||||||||||||||| Sbjct: 31632 aaaatgatcttatggcattgcggatatcccacgatttgatcattgatactgcagttttgt 31573 Query: 948 acaaatataatcgtggcccacgctgcaaaattgctttacgtgtcctggcaaacaaatatc 1007 ||||| |||||||||||| |||| || || |||||||||||||||||||| || | || Sbjct: 31572 acaaacataatcgtggccatcgctttaagatcgctttacgtgtcctggcaaaaaagtttc 31513 Query: 1008 ttagccgggtgatccagaacactgggtctgggcatgacagtgtggaagatgcaagagctg 1067 ||| ||||| |||||||||||||||||||||||||||||||||||| ||||| | ||||| Sbjct: 31512 ttaaccgggagatccagaacactgggtctgggcatgacagtgtggaggatgctaaagctg 31453 Query: 1068 ctctggatcttgcctttttgaaaatcaaatatggt 1102 |||| || || || || |||||||||||||||||| Sbjct: 31452 ctctagaactcgctttattgaaaatcaaatatggt 31418 Score = 170 bits (86), Expect = 1e-38 Identities = 122/134 (91%) Strand = Plus / Minus Query: 239 aacaagcctcttatcacaaaagttgtccttctctatgttcctggcctcgatgcagcttta 298 |||||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||| Sbjct: 33688 aacaagcctcttataccaaaagtcgtccttctatatgttcctggccttgatgcagcttta 33629 Query: 299 tacatgtctcagtcacgcctcctttcttctttgaaagaattgtgtggcaatccaaaacct 358 || ||||| || || || | ||||||||||||||||||||| |||||||||||||||||| Sbjct: 33628 tatatgtcgcaatcccgtcacctttcttctttgaaagaattttgtggcaatccaaaacct 33569 Query: 359 gttctagcttcaag 372 |||||||||||||| Sbjct: 33568 gttctagcttcaag 33555 Score = 137 bits (69), Expect = 2e-28 Identities = 156/185 (84%) Strand = Plus / Minus Query: 1100 ggtcctgattttggctctccaccatcgttttcacggagaaagttggcttccattctgcat 1159 ||||||||||||||||| |||||||| |||||| |||||||||||||||| |||||| Sbjct: 31323 ggtcctgattttggctccccaccatcaacttcacgacgaaagttggcttccatactgcat 31264 Query: 1160 gaatgtgggaaaaggagttcactcattgatgaagtgtttgttcttgaccgctattcagat 1219 ||| |||| |||| | || ||||||||||| | | |||||||| || ||||||||| Sbjct: 31263 gaaagtggtaaaaaatgctccctcattgatgacgcctccgttcttgagcggtattcagat 31204 Query: 1220 gcttccagcaattcaattgcagttttctcagatgataatgccctctccagatcaatgaaa 1279 ||||| | |||||||| |||||||||||||||||| |||| || || |||||||||||| Sbjct: 31203 gcttcttgtaattcaatagcagttttctcagatgatgatgcactatctagatcaatgaaa 31144 Query: 1280 gaggt 1284 ||||| Sbjct: 31143 gaggt 31139 Score = 113 bits (57), Expect = 2e-21 Identities = 108/125 (86%) Strand = Plus / Minus Query: 1579 gaaaatgctcaaccacggagaaaaaacagtcgatagccgggaaaatattgtccatgcatt 1638 ||||||||| || || | |||| ||||||| || ||||| |||| ||||| | ||||| Sbjct: 30647 gaaaatgcttaagcaagaagaagaaacagtagaaagccgcgaaagcattgttaaagcatt 30588 Query: 1639 ggaagatttacaggcccaagcagaagttgctctatgcttctgttgtgtcaagcattagct 1698 ||||||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct: 30587 ggaagatatacaagcccaggcagaagttgctctatgcttctgttgtgtcaaacattagct 30528 Query: 1699 gtaag 1703 ||||| Sbjct: 30527 gtaag 30523 Score = 105 bits (53), Expect = 6e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 371 agctgtataccagatgaaaggcataccattgacgcactcctgacatgcagagtaaagcga 430 ||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| Sbjct: 33425 agctgtataccagatgaaaggcataccatcgatgcactcctaacatgcagagtaaagcga 33366 Query: 431 aagcg 435 ||||| Sbjct: 33365 aagcg 33361 Score = 101 bits (51), Expect = 9e-18 Identities = 66/71 (92%) Strand = Plus / Minus Query: 168 tgcaggatgtccaggggctagtaacttgggttattggtgaaggcatgccgccttcatggg 227 |||||||||| |||||||||||||||||||| |||||||| ||||||| |||||| |||| Sbjct: 34449 tgcaggatgttcaggggctagtaacttgggtcattggtgatggcatgctgccttcttggg 34390 Query: 228 tgtttgttaaa 238 ||||||||||| Sbjct: 34389 tgtttgttaaa 34379 Score = 97.6 bits (49), Expect = 1e-16 Identities = 234/295 (79%), Gaps = 3/295 (1%) Strand = Plus / Minus Query: 1281 aggtaaagaatgacaaaatcagctttgtctggacccagttttcaggattgatctcttatc 1340 ||||||| ||||||||| | || ||||||||||| || || || ||||||||| |||| Sbjct: 31054 aggtaaaaaatgacaaagttagttttgtctggactcaattctcgaaattgatctcgtatc 30995 Query: 1341 tacgtaaaagagccgaagatcctgtaaaattgaaatcctgtgttgcagaggctattgcat 1400 | |||| ||| ||| ||||||| | || ||||||| |||||||||||||||||||||| Sbjct: 30994 ttcgtacaagggcccaagatcccgataaggtgaaatcgtgtgttgcagaggctattgcat 30935 Query: 1401 tgaaaacatgtgatagaaaaactgcccggaaaagagcaa---aacaaatttgtccagagc 1457 || | || || || ||||||||||| | ||||||| || | |||| |||||| || | Sbjct: 30934 tgcagacctgcgacagaaaaactgctcagaaaagaaaaaagcatcaaacttgtcctgaac 30875 Query: 1458 tgaagggaattttgagtgaattggacaagaaaattagaaaactacatgatacactgcctg 1517 | |||| |||| ||| || ||||||||||||||||||||| || | | | |||| Sbjct: 30874 taaaggaaattctgattgggttggacaagaaaattagaaaattatacagcatcttacctg 30815 Query: 1518 aaaatgcaatgttcattatatgtaccggtcatggggatactcctttggtacaaag 1572 | ||||||||| | |||||||||| |||||||| ||||| |||||||| ||||| Sbjct: 30814 ataatgcaatgcttattatatgtagtggtcatggtgatacacctttggtgcaaag 30760 Score = 93.7 bits (47), Expect = 2e-15 Identities = 59/63 (93%) Strand = Plus / Minus Query: 655 gtgtgtgacagcagctggatttgaacttacgagagtaacattagtcgatattaaaggaga 714 |||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 32371 gtgtgttactgcagctggatttgaacttacaagagtaacattagttgatattaaaggaga 32312 Query: 715 ggt 717 ||| Sbjct: 32311 ggt 32309 Score = 81.8 bits (41), Expect = 9e-12 Identities = 47/49 (95%) Strand = Plus / Minus Query: 725 gataaactagtcaagcctaccaatccaatcactgattacaatacaaggt 773 ||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct: 32223 gataaactagttaagcctgccaatccaatcactgattacaatacaaggt 32175 Score = 71.9 bits (36), Expect = 8e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 770 aggtttagtggaatcactgctgagatgctatccgatgtgacaacaaccctccaggagatt 829 ||||| ||||||||||||||||| ||| || | ||||| || |||||||||||||||||| Sbjct: 31835 aggttcagtggaatcactgctgaaatgttagctgatgttaccacaaccctccaggagatt 31776 Query: 830 cagg 833 |||| Sbjct: 31775 cagg 31772 Score = 67.9 bits (34), Expect = 1e-07 Identities = 52/58 (89%) Strand = Plus / Minus Query: 116 gctaaacctgatgttatttttaaggaggccacgtcagattccacattgaatttgcagg 173 ||||||||||||||| |||||||||||||||| ||| |||| || || |||||||||| Sbjct: 34585 gctaaacctgatgttgtttttaaggaggccacttcaaattctacgttaaatttgcagg 34528 Score = 65.9 bits (33), Expect = 5e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 583 aggttttgtccctacggttgcagctccttcaggctcttccccatacgaaatcctcggact 642 ||||||||||||||| ||| |||||||| |||||||||| ||||| | ||| || | ||| Sbjct: 32619 aggttttgtccctactgtttcagctcctccaggctcttcgccatatgcaattcttgcact 32560 Query: 643 tgattgtgagatg 655 ||| ||||||||| Sbjct: 32559 tgactgtgagatg 32547 Score = 58.0 bits (29), Expect = 1e-04 Identities = 56/65 (86%) Strand = Plus / Minus Query: 500 ctaaaagatataccattttctgttaaatattacacactttctaaaaaggacttggaagat 559 ||||| |||||||| ||| || ||||||||||||| |||||| |||| |||||||| || Sbjct: 32778 ctaaaggatataccgtttcctattaaatattacacgctttctgaaaaagacttggaggac 32719 Query: 560 aatgg 564 ||||| Sbjct: 32718 aatgg 32714 Score = 56.0 bits (28), Expect = 5e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 61 ctccgacggagccgcccccgctgcctctacgtactacgacgtcttcggtcccgacg 116 ||||| || |||||||||||| |||| |||||||||||||||| ||| ||||||| Sbjct: 35470 ctccggcgaagccgcccccgcctcctccacgtactacgacgtctacggacccgacg 35415
>ref|NM_122481.2| Arabidopsis thaliana exonuclease (AT5G25800) mRNA, complete cds Length = 1992 Score = 58.0 bits (29), Expect = 1e-04 Identities = 71/85 (83%) Strand = Plus / Plus Query: 217 gccttcatgggtgtttgttaaaaacaagcctcttatcacaaaagttgtccttctctatgt 276 |||||||||||| ||| |||| ||||||||||| || |||| ||||| || ||||| | Sbjct: 356 gccttcatgggtatttattaagaacaagcctctcattccaaaggttgtactgctctacct 415 Query: 277 tcctggcctcgatgcagctttatac 301 |||||| | ||||||||||||||| Sbjct: 416 tcctggattggatgcagctttatac 440 Score = 48.1 bits (24), Expect = 0.12 Identities = 60/72 (83%) Strand = Plus / Plus Query: 725 gataaactagtcaagcctaccaatccaatcactgattacaatacaaggtttagtggaatc 784 |||||| |||||| ||| || ||||| || ||||||||||| ||||| | ||||||||| Sbjct: 885 gataaattagtcatgccaacaaatcctattactgattacaacacaagatatagtggaata 944 Query: 785 actgctgagatg 796 || |||| |||| Sbjct: 945 acagctgtgatg 956
>gb|AY128370.1| Arabidopsis thaliana exonuclease-like protein (At5g25800) mRNA, complete cds Length = 1883 Score = 58.0 bits (29), Expect = 1e-04 Identities = 71/85 (83%) Strand = Plus / Plus Query: 217 gccttcatgggtgtttgttaaaaacaagcctcttatcacaaaagttgtccttctctatgt 276 |||||||||||| ||| |||| ||||||||||| || |||| ||||| || ||||| | Sbjct: 356 gccttcatgggtatttattaagaacaagcctctcattccaaaggttgtactgctctacct 415 Query: 277 tcctggcctcgatgcagctttatac 301 |||||| | ||||||||||||||| Sbjct: 416 tcctggattggatgcagctttatac 440 Score = 48.1 bits (24), Expect = 0.12 Identities = 60/72 (83%) Strand = Plus / Plus Query: 725 gataaactagtcaagcctaccaatccaatcactgattacaatacaaggtttagtggaatc 784 |||||| |||||| ||| || ||||| || ||||||||||| ||||| | ||||||||| Sbjct: 885 gataaattagtcatgccaacaaatcctattactgattacaacacaagatatagtggaata 944 Query: 785 actgctgagatg 796 || |||| |||| Sbjct: 945 acagctgtgatg 956
>gb|AC110256.12| Mus musculus chromosome 6, clone RP23-274K3, complete sequence Length = 240425 Score = 46.1 bits (23), Expect = 0.47 Identities = 23/23 (100%) Strand = Plus / Minus Query: 348 atccaaaacctgttctagcttca 370 ||||||||||||||||||||||| Sbjct: 154236 atccaaaacctgttctagcttca 154214
>gb|AC131764.3| Mus musculus BAC clone RP24-239L16 from chromosome 6, complete sequence Length = 210145 Score = 46.1 bits (23), Expect = 0.47 Identities = 23/23 (100%) Strand = Plus / Plus Query: 348 atccaaaacctgttctagcttca 370 ||||||||||||||||||||||| Sbjct: 190176 atccaaaacctgttctagcttca 190198
>emb|BX927144.24| Zebrafish DNA sequence from clone CH211-216K22 in linkage group 8, complete sequence Length = 168503 Score = 46.1 bits (23), Expect = 0.47 Identities = 23/23 (100%) Strand = Plus / Plus Query: 975 aaattgctttacgtgtcctggca 997 ||||||||||||||||||||||| Sbjct: 52988 aaattgctttacgtgtcctggca 53010
>emb|BX530098.6| Zebrafish DNA sequence from clone RP71-1G9, complete sequence Length = 156637 Score = 46.1 bits (23), Expect = 0.47 Identities = 23/23 (100%) Strand = Plus / Minus Query: 975 aaattgctttacgtgtcctggca 997 ||||||||||||||||||||||| Sbjct: 16175 aaattgctttacgtgtcctggca 16153
>ref|XM_739656.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000569.02.0) partial mRNA Length = 2418 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Plus Query: 869 cttgttgggcattctttggaaaatga 894 ||||||||||||||||| |||||||| Sbjct: 1354 cttgttgggcattctttagaaaatga 1379
>gb|AC170737.3| Sorex araneus clone SA_Ba-480N17, complete sequence Length = 173928 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1041 atgacagtgtggaagatgcaa 1061 ||||||||||||||||||||| Sbjct: 90492 atgacagtgtggaagatgcaa 90472
>gb|AC129299.3| Mus musculus BAC clone RP24-420E16 from chromosome 14, complete sequence Length = 156372 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1816 cagtagttgcagccttgctgg 1836 ||||||||||||||||||||| Sbjct: 74866 cagtagttgcagccttgctgg 74846
>gb|AC006355.3| Homo sapiens PAC clone RP5-1093G23 from 7, complete sequence Length = 137611 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1391 gctattgcattgaaaacatgt 1411 ||||||||||||||||||||| Sbjct: 106978 gctattgcattgaaaacatgt 106998
>gb|AC102626.9| Mus musculus chromosome 12, clone RP23-456E21, complete sequence Length = 222905 Score = 42.1 bits (21), Expect = 7.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1145 gcttccattctgcatgaatgtggga 1169 ||||||||| ||||||||||||||| Sbjct: 92905 gcttccattgtgcatgaatgtggga 92881
>gb|AC127789.4| Rattus norvegicus 1 BAC CH230-15M17 (Children's Hospital Oakland Research Institute) complete sequence Length = 240825 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1684 tgtcaagcattagctgtaagc 1704 ||||||||||||||||||||| Sbjct: 176079 tgtcaagcattagctgtaagc 176099
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1278 aagaggtaaagaatgacaaaa 1298 ||||||||||||||||||||| Sbjct: 1824642 aagaggtaaagaatgacaaaa 1824622
>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome Length = 2809422 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1278 aagaggtaaagaatgacaaaa 1298 ||||||||||||||||||||| Sbjct: 1794347 aagaggtaaagaatgacaaaa 1794327
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Length = 2821361 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1278 aagaggtaaagaatgacaaaa 1298 ||||||||||||||||||||| Sbjct: 1720387 aagaggtaaagaatgacaaaa 1720367
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome Length = 2872769 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1278 aagaggtaaagaatgacaaaa 1298 ||||||||||||||||||||| Sbjct: 1817184 aagaggtaaagaatgacaaaa 1817164
>gb|AE014178.1| Mus musculus piebald deletion region section 6 of 11 of the complete sequence Length = 400029 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1816 cagtagttgcagccttgctgg 1836 ||||||||||||||||||||| Sbjct: 81539 cagtagttgcagccttgctgg 81519
>gb|AC112516.2| Homo sapiens chromosome 3 clone RP11-350F11, complete sequence Length = 184868 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1484 aagaaaattagaaaactacat 1504 ||||||||||||||||||||| Sbjct: 13370 aagaaaattagaaaactacat 13390
>gb|AC121493.1| Homo sapiens chromosome 3 clone RP11-88H12, complete sequence Length = 178780 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1484 aagaaaattagaaaactacat 1504 ||||||||||||||||||||| Sbjct: 139875 aagaaaattagaaaactacat 139895
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1665 ttgctctatgcttctgttgtg 1685 ||||||||||||||||||||| Sbjct: 15845380 ttgctctatgcttctgttgtg 15845360
>emb|BX323827.5| Human DNA sequence from clone RP4-732K23 on chromosome X, complete sequence Length = 57941 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1485 agaaaattagaaaactacatg 1505 ||||||||||||||||||||| Sbjct: 44093 agaaaattagaaaactacatg 44073
>emb|AL512443.7| Human DNA sequence from clone RP11-108P2 on chromosome 1 Contains part of a novel gene and the ZNF265 gene for zinc finger protein 265, complete sequence Length = 55613 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1278 aagaggtaaagaatgacaaaa 1298 ||||||||||||||||||||| Sbjct: 1119 aagaggtaaagaatgacaaaa 1099
>gb|AC123710.12| Mus musculus chromosome 5, clone RP23-378C15, complete sequence Length = 175744 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1394 attgcattgaaaacatgtgat 1414 ||||||||||||||||||||| Sbjct: 161854 attgcattgaaaacatgtgat 161874
>emb|AL031429.11|HS333A15 Human DNA sequence from clone RP3-333A15 on chromosome 1p31.1-31.3 Contains the 5' end of the PTGER3 gene for prostaglandin E receptor 3 (subtype EP3), part of a novel gene and a CpG island, complete sequence Length = 133221 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1278 aagaggtaaagaatgacaaaa 1298 ||||||||||||||||||||| Sbjct: 132340 aagaggtaaagaatgacaaaa 132320
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1278 aagaggtaaagaatgacaaaa 1298 ||||||||||||||||||||| Sbjct: 1765543 aagaggtaaagaatgacaaaa 1765523
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1278 aagaggtaaagaatgacaaaa 1298 ||||||||||||||||||||| Sbjct: 1785890 aagaggtaaagaatgacaaaa 1785870
>gb|AC149055.6| Mus musculus BAC clone RP23-358K1 from chromosome 7, complete sequence Length = 215193 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 742 taccaatccaatcactgatta 762 ||||||||||||||||||||| Sbjct: 143478 taccaatccaatcactgatta 143498
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome Length = 2814816 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1278 aagaggtaaagaatgacaaaa 1298 ||||||||||||||||||||| Sbjct: 1746729 aagaggtaaagaatgacaaaa 1746709
>gb|AC092153.4| Homo sapiens BAC clone RP11-252K7 from 2, complete sequence Length = 150641 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1097 tatggtcctgattttggctct 1117 ||||||||||||||||||||| Sbjct: 90253 tatggtcctgattttggctct 90273
>dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1342_D02 Length = 125460 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1665 ttgctctatgcttctgttgtg 1685 ||||||||||||||||||||| Sbjct: 103320 ttgctctatgcttctgttgtg 103300
>dbj|AP000852.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-851M3, complete sequence Length = 166277 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1480 ggacaagaaaattagaaaact 1500 ||||||||||||||||||||| Sbjct: 16296 ggacaagaaaattagaaaact 16276
>gb|AC151910.4| Mus musculus BAC clone RP23-67A17 from 14, complete sequence Length = 207254 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1816 cagtagttgcagccttgctgg 1836 ||||||||||||||||||||| Sbjct: 183357 cagtagttgcagccttgctgg 183337
>gb|AC107666.13| Mus musculus chromosome 5, clone RP23-111M3, complete sequence Length = 230189 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1394 attgcattgaaaacatgtgat 1414 ||||||||||||||||||||| Sbjct: 49948 attgcattgaaaacatgtgat 49968
>emb|CT025710.9| Mouse DNA sequence from clone RP23-261P14 on chromosome 12, complete sequence Length = 225685 Score = 42.1 bits (21), Expect = 7.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1145 gcttccattctgcatgaatgtggga 1169 ||||||||| ||||||||||||||| Sbjct: 201993 gcttccattgtgcatgaatgtggga 201969
>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome Length = 2902619 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1278 aagaggtaaagaatgacaaaa 1298 ||||||||||||||||||||| Sbjct: 1857365 aagaggtaaagaatgacaaaa 1857345
>emb|CT573438.2| Pan troglodytes chromosome X clone RP43-057M01 map Xq28, complete sequence Length = 162109 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1485 agaaaattagaaaactacatg 1505 ||||||||||||||||||||| Sbjct: 131103 agaaaattagaaaactacatg 131123
>gb|AC117804.7| Mus musculus chromosome 8, clone RP24-565N9, complete sequence Length = 126486 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1514 cctgaaaatgcaatgttcatt 1534 ||||||||||||||||||||| Sbjct: 51617 cctgaaaatgcaatgttcatt 51637
>gb|AC005405.1|AC005405 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence Length = 94362 Score = 42.1 bits (21), Expect = 7.4 Identities = 42/49 (85%) Strand = Plus / Minus Query: 725 gataaactagtcaagcctaccaatccaatcactgattacaatacaaggt 773 |||||| |||||| ||| || ||||| || ||||||||||| ||||||| Sbjct: 14109 gataaattagtcatgccaacaaatcctattactgattacaacacaaggt 14061
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome Length = 2742531 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1278 aagaggtaaagaatgacaaaa 1298 ||||||||||||||||||||| Sbjct: 1694378 aagaggtaaagaatgacaaaa 1694358
>gb|U29380.2| Caenorhabditis elegans cosmid ZK546, complete sequence Length = 36429 Score = 42.1 bits (21), Expect = 7.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 520 tgttaaatattacacactttctaaa 544 |||||||||||| |||||||||||| Sbjct: 4587 tgttaaatattaaacactttctaaa 4611
>gb|U41533.1| Caenorhabditis elegans cosmid R05F9, complete sequence Length = 40997 Score = 42.1 bits (21), Expect = 7.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 520 tgttaaatattacacactttctaaa 544 |||||||||||| |||||||||||| Sbjct: 36784 tgttaaatattaaacactttctaaa 36808 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 403,163,843 Number of extensions: 21589333 Number of successful extensions: 430998 Number of sequences better than 10.0: 46 Number of HSP's gapped: 430986 Number of HSP's successfully gapped: 89 Length of query: 1939 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1916 Effective length of database: 18,503,978,556 Effective search space: 35453622913296 Effective search space used: 35453622913296 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
