ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf85e12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK242314.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J075195E23, full insert sequence Length = 846 Score = 319 bits (161), Expect = 8e-84 Identities = 302/349 (86%) Strand = Plus / Plus Query: 241 cctgtgccgcacaagtccctctccttggatatcaagggcaacaagaccgacattgtcatc 300 ||||||||||||||||||||||| ||||||||||| ||||| ||||| || ||||| ||| Sbjct: 185 cctgtgccgcacaagtccctctctttggatatcaatggcaataagacagatattgttatc 244 Query: 301 agcaaatacgaagacaactttctggtcattgtgacacagattgggtgcatgggaaccata 360 ||||| || || || |||||| |||| || |||||||| || || ||||||||||||||| Sbjct: 245 agcaagtatgaggataactttatggtgatggtgacacaaataggatgcatgggaaccata 304 Query: 361 ttagctgctaagaaagatgaaagtgtcttctctgatccaacctacaatgtatctgttctt 420 ||||||| | ||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 305 ctagctgccaggaaagatgaaagtgttttttctgatccaacctacaatgtatctgttctt 364 Query: 421 tttgggaagagggatgagccactcctgctagcttgtgcacgtcaacttatcgagcatata 480 ||||| ||||| ||||||||| | || |||||||||||||| |||||||| || || ||| Sbjct: 365 tttggaaagagagatgagccattactactagcttgtgcacgccaacttattgaacacata 424 Query: 481 agtggtagtggctcagctcggccgttggtgatttctcttggtttgaaggatcattcccag 540 ||||||||||||||||| ||| | ||| |||| ||||||||| ||||||||||||||||| Sbjct: 425 agtggtagtggctcagcacggtcattgatgatatctcttggtctgaaggatcattcccag 484 Query: 541 ggaacattgaaagatgtagtctctgccattgttgacaaccgcctatggt 589 | |||| ||||| || | || || |||| |||| ||||||||||||| Sbjct: 485 gcaacaatgaaatatattgtttccaccataattgagaaccgcctatggt 533
>ref|NM_001071064.1| Oryza sativa (japonica cultivar-group) Os10g0395500 (Os10g0395500) mRNA, complete cds Length = 393 Score = 319 bits (161), Expect = 8e-84 Identities = 302/349 (86%) Strand = Plus / Plus Query: 241 cctgtgccgcacaagtccctctccttggatatcaagggcaacaagaccgacattgtcatc 300 ||||||||||||||||||||||| ||||||||||| ||||| ||||| || ||||| ||| Sbjct: 43 cctgtgccgcacaagtccctctctttggatatcaatggcaataagacagatattgttatc 102 Query: 301 agcaaatacgaagacaactttctggtcattgtgacacagattgggtgcatgggaaccata 360 ||||| || || || |||||| |||| || |||||||| || || ||||||||||||||| Sbjct: 103 agcaagtatgaggataactttatggtgatggtgacacaaataggatgcatgggaaccata 162 Query: 361 ttagctgctaagaaagatgaaagtgtcttctctgatccaacctacaatgtatctgttctt 420 ||||||| | ||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 163 ctagctgccaggaaagatgaaagtgttttttctgatccaacctacaatgtatctgttctt 222 Query: 421 tttgggaagagggatgagccactcctgctagcttgtgcacgtcaacttatcgagcatata 480 ||||| ||||| ||||||||| | || |||||||||||||| |||||||| || || ||| Sbjct: 223 tttggaaagagagatgagccattactactagcttgtgcacgccaacttattgaacacata 282 Query: 481 agtggtagtggctcagctcggccgttggtgatttctcttggtttgaaggatcattcccag 540 ||||||||||||||||| ||| | ||| |||| ||||||||| ||||||||||||||||| Sbjct: 283 agtggtagtggctcagcacggtcattgatgatatctcttggtctgaaggatcattcccag 342 Query: 541 ggaacattgaaagatgtagtctctgccattgttgacaaccgcctatggt 589 | |||| ||||| || | || || |||| |||| ||||||||||||| Sbjct: 343 gcaacaatgaaatatattgtttccaccataattgagaaccgcctatggt 391
>gb|DQ245760.1| Zea mays clone 20182 mRNA sequence Length = 852 Score = 268 bits (135), Expect = 3e-68 Identities = 270/315 (85%) Strand = Plus / Plus Query: 237 cttccctgtgccgcacaagtccctctccttggatatcaagggcaacaagaccgacattgt 296 ||||||||||| ||| ||||||||| || || |||||||| || || || || ||||| Sbjct: 221 cttccctgtgcagcatcggtccctctcattagacatcaagggaaataaaacagatattgt 280 Query: 297 catcagcaaatacgaagacaactttctggtcattgtgacacagattgggtgcatgggaac 356 ||||| ||||| ||||| | ||||||||| |||||| |||| || || ||||||||||| Sbjct: 281 tatcagtaaatatgaagatacctttctggtgattgtggcacaaatcggctgcatgggaac 340 Query: 357 catattagctgctaagaaagatgaaagtgtcttctctgatccaacctacaatgtatctgt 416 |||| ||||||| |||||||| |||||||| ||||| || |||||||||||||| ||||| Sbjct: 341 catactagctgccaagaaagacgaaagtgttttctcagacccaacctacaatgtgtctgt 400 Query: 417 tctttttgggaagagggatgagccactcctgctagcttgtgcacgtcaacttatcgagca 476 ||||||||||||||| ||||||||||||| | |||||| |||||||||||||| ||||| Sbjct: 401 tctttttgggaagagaaatgagccactcctacaagcttgcgcacgtcaacttattgagca 460 Query: 477 tataagtggtagtggctcagctcggccgttggtgatttctcttggtttgaaggatcattc 536 |||||||| ||||||||||||||| | ||||| |||||||| ||| |||| |||||||| Sbjct: 461 cataagtggcagtggctcagctcggtcattggttatttctctgggtctgaaagatcattc 520 Query: 537 ccagggaacattgaa 551 ||||||||| |||| Sbjct: 521 tcagggaacactgaa 535
>gb|AY103939.1| Zea mays PCO144937 mRNA sequence Length = 689 Score = 252 bits (127), Expect = 2e-63 Identities = 268/315 (85%) Strand = Plus / Plus Query: 237 cttccctgtgccgcacaagtccctctccttggatatcaagggcaacaagaccgacattgt 296 ||||||||||| ||| ||||||||| || || |||||||| || || || || ||||| Sbjct: 146 cttccctgtgcagcatcggtccctctcattagacatcaagggaaataaaacagatattgt 205 Query: 297 catcagcaaatacgaagacaactttctggtcattgtgacacagattgggtgcatgggaac 356 ||||| ||||| ||||| | ||||||||| ||||||||||| || || ||||||||||| Sbjct: 206 tatcagtaaatatgaagatacctttctggtgattgtgacacaaatcggctgcatgggaac 265 Query: 357 catattagctgctaagaaagatgaaagtgtcttctctgatccaacctacaatgtatctgt 416 |||| ||||||| |||||||| |||||||| ||||| || |||||||||||||| ||||| Sbjct: 266 catactagctgccaagaaagacgaaagtgttttctcggacccaacctacaatgtgtctgt 325 Query: 417 tctttttgggaagagggatgagccactcctgctagcttgtgcacgtcaacttatcgagca 476 ||||||||||| ||| ||||||||||||| | |||||| |||| ||||||||| ||||| Sbjct: 326 tctttttgggaggagaaatgagccactcctacaagcttgcgcacatcaacttattgagca 385 Query: 477 tataagtggtagtggctcagctcggccgttggtgatttctcttggtttgaaggatcattc 536 |||||||| ||||||||||||||| | ||||| |||||||| ||| |||| |||||||| Sbjct: 386 cataagtggcagtggctcagctcggtcattggttatttctctgggtctgaaagatcattc 445 Query: 537 ccagggaacattgaa 551 |||| |||| |||| Sbjct: 446 tcaggtaacactgaa 460
>ref|NM_001049482.1| Oryza sativa (japonica cultivar-group) Os01g0339600 (Os01g0339600) mRNA, complete cds Length = 2522 Score = 170 bits (86), Expect = 5e-39 Identities = 202/240 (84%), Gaps = 8/240 (3%) Strand = Plus / Plus Query: 243 tgtgccgcacaagtccctctccttggatatcaagggcaacaagaccgacattgtcatcag 302 ||||||||||||||||||||| |||||||| | ||||| ||||| || ||||| ||||| Sbjct: 1177 tgtgccgcacaagtccctctcgttggatat--atggcaataagacagatattgttatcag 1234 Query: 303 caaatacgaagacaactttctggtcattgtgacacagattgggtgcatgggaaccatatt 362 ||| || || | | |||| |||| || |||||||| || || ||||||||||||||||| Sbjct: 1235 caagtatgagggtagctttatggtgatggtgacacaaataggatgcatgggaaccatatt 1294 Query: 363 agctgctaagaaagatgaaagtgtcttctctgatccaacctacaatgtatctgttctttt 422 |||||| | ||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct: 1295 agctgccaggaaagatgaaagtgttttttctgatccaacctacaa------tgttctttt 1348 Query: 423 tgggaagagggatgagccactcctgctagcttgtgcacgtcaacttatcgagcatataag 482 ||| |||||||||||||| | || |||||||||||||| ||||||||||| || ||||| Sbjct: 1349 tggaaagagggatgagccgttactactagcttgtgcacgccaacttatcgaacacataag 1408 Score = 50.1 bits (25), Expect = 0.012 Identities = 31/33 (93%) Strand = Plus / Plus Query: 509 tgatttctcttggtttgaaggatcattcccagg 541 |||| ||||||||| |||||||||||||||||| Sbjct: 2035 tgatatctcttggtctgaaggatcattcccagg 2067
>dbj|AK106772.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-G01, full insert sequence Length = 2524 Score = 170 bits (86), Expect = 5e-39 Identities = 202/240 (84%), Gaps = 8/240 (3%) Strand = Plus / Plus Query: 243 tgtgccgcacaagtccctctccttggatatcaagggcaacaagaccgacattgtcatcag 302 ||||||||||||||||||||| |||||||| | ||||| ||||| || ||||| ||||| Sbjct: 1179 tgtgccgcacaagtccctctcgttggatat--atggcaataagacagatattgttatcag 1236 Query: 303 caaatacgaagacaactttctggtcattgtgacacagattgggtgcatgggaaccatatt 362 ||| || || | | |||| |||| || |||||||| || || ||||||||||||||||| Sbjct: 1237 caagtatgagggtagctttatggtgatggtgacacaaataggatgcatgggaaccatatt 1296 Query: 363 agctgctaagaaagatgaaagtgtcttctctgatccaacctacaatgtatctgttctttt 422 |||||| | ||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct: 1297 agctgccaggaaagatgaaagtgttttttctgatccaacctacaa------tgttctttt 1350 Query: 423 tgggaagagggatgagccactcctgctagcttgtgcacgtcaacttatcgagcatataag 482 ||| |||||||||||||| | || |||||||||||||| ||||||||||| || ||||| Sbjct: 1351 tggaaagagggatgagccgttactactagcttgtgcacgccaacttatcgaacacataag 1410 Score = 50.1 bits (25), Expect = 0.012 Identities = 31/33 (93%) Strand = Plus / Plus Query: 509 tgatttctcttggtttgaaggatcattcccagg 541 |||| ||||||||| |||||||||||||||||| Sbjct: 2037 tgatatctcttggtctgaaggatcattcccagg 2069
>gb|AC122144.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0011L09, complete sequence Length = 121055 Score = 101 bits (51), Expect = 4e-18 Identities = 63/67 (94%) Strand = Plus / Plus Query: 372 gaaagatgaaagtgtcttctctgatccaacctacaatgtatctgttctttttgggaagag 431 ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 49376 gaaagatgaaagtgttttttctgatccaacctacaatgtatctgttctttttggaaagag 49435 Query: 432 ggatgag 438 |||||| Sbjct: 49436 agatgag 49442 Score = 73.8 bits (37), Expect = 8e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 481 agtggtagtggctcagctcggccgttggtgatttctcttggtttgaaggatcattcccag 540 ||||||||||||||||| ||| | ||| |||| ||||||||| ||||||||||||||||| Sbjct: 49978 agtggtagtggctcagcacggtcattgatgatatctcttggtctgaaggatcattcccag 50037 Query: 541 g 541 | Sbjct: 50038 g 50038 Score = 61.9 bits (31), Expect = 3e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 241 cctgtgccgcacaagtccctctccttggatatcaa 275 ||||||||||||||||||||||| ||||||||||| Sbjct: 48389 cctgtgccgcacaagtccctctctttggatatcaa 48423 Score = 44.1 bits (22), Expect = 0.71 Identities = 34/38 (89%) Strand = Plus / Plus Query: 331 gtgacacagattgggtgcatgggaaccatattagctgc 368 |||||||| || || ||||||||||||||| ||||||| Sbjct: 48907 gtgacacaaataggatgcatgggaaccatactagctgc 48944
>gb|AC092388.5| Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence Length = 177565 Score = 101 bits (51), Expect = 4e-18 Identities = 63/67 (94%) Strand = Plus / Minus Query: 372 gaaagatgaaagtgtcttctctgatccaacctacaatgtatctgttctttttgggaagag 431 ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 10625 gaaagatgaaagtgttttttctgatccaacctacaatgtatctgttctttttggaaagag 10566 Query: 432 ggatgag 438 |||||| Sbjct: 10565 agatgag 10559 Score = 73.8 bits (37), Expect = 8e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 481 agtggtagtggctcagctcggccgttggtgatttctcttggtttgaaggatcattcccag 540 ||||||||||||||||| ||| | ||| |||| ||||||||| ||||||||||||||||| Sbjct: 10023 agtggtagtggctcagcacggtcattgatgatatctcttggtctgaaggatcattcccag 9964 Query: 541 g 541 | Sbjct: 9963 g 9963 Score = 61.9 bits (31), Expect = 3e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 241 cctgtgccgcacaagtccctctccttggatatcaa 275 ||||||||||||||||||||||| ||||||||||| Sbjct: 11612 cctgtgccgcacaagtccctctctttggatatcaa 11578 Score = 44.1 bits (22), Expect = 0.71 Identities = 34/38 (89%) Strand = Plus / Minus Query: 331 gtgacacagattgggtgcatgggaaccatattagctgc 368 |||||||| || || ||||||||||||||| ||||||| Sbjct: 11094 gtgacacaaataggatgcatgggaaccatactagctgc 11057
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 101 bits (51), Expect = 4e-18 Identities = 63/67 (94%) Strand = Plus / Plus Query: 372 gaaagatgaaagtgtcttctctgatccaacctacaatgtatctgttctttttgggaagag 431 ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 12752937 gaaagatgaaagtgttttttctgatccaacctacaatgtatctgttctttttggaaagag 12752996 Query: 432 ggatgag 438 |||||| Sbjct: 12752997 agatgag 12753003 Score = 73.8 bits (37), Expect = 8e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 481 agtggtagtggctcagctcggccgttggtgatttctcttggtttgaaggatcattcccag 540 ||||||||||||||||| ||| | ||| |||| ||||||||| ||||||||||||||||| Sbjct: 12753539 agtggtagtggctcagcacggtcattgatgatatctcttggtctgaaggatcattcccag 12753598 Query: 541 g 541 | Sbjct: 12753599 g 12753599 Score = 61.9 bits (31), Expect = 3e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 241 cctgtgccgcacaagtccctctccttggatatcaa 275 ||||||||||||||||||||||| ||||||||||| Sbjct: 12751950 cctgtgccgcacaagtccctctctttggatatcaa 12751984 Score = 52.0 bits (26), Expect = 0.003 Identities = 55/64 (85%), Gaps = 3/64 (4%) Strand = Plus / Minus Query: 481 agtggtagtggctca---gctcggccgttggtgatttctcttggtttgaaggatcattcc 537 ||||||||||||||| || ||| | ||| |||| ||||||||| |||||||||||||| Sbjct: 13080978 agtggtagtggctcatcagcacggtcattgatgatatctcttggtctgaaggatcattcc 13080919 Query: 538 cagg 541 |||| Sbjct: 13080918 cagg 13080915 Score = 44.1 bits (22), Expect = 0.71 Identities = 34/38 (89%) Strand = Plus / Plus Query: 331 gtgacacagattgggtgcatgggaaccatattagctgc 368 |||||||| || || ||||||||||||||| ||||||| Sbjct: 12752468 gtgacacaaataggatgcatgggaaccatactagctgc 12752505
>gb|AY664417.1| Zea mays cultivar Mo17 locus 9002, complete sequence Length = 366120 Score = 79.8 bits (40), Expect = 1e-11 Identities = 55/60 (91%) Strand = Plus / Minus Query: 372 gaaagatgaaagtgtcttctctgatccaacctacaatgtatctgttctttttgggaagag 431 |||||| |||||||| ||||| || |||||||||||||| |||||||||||||||||||| Sbjct: 193033 gaaagacgaaagtgttttctcagacccaacctacaatgtgtctgttctttttgggaagag 192974 Score = 63.9 bits (32), Expect = 8e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 481 agtggtagtggctcagctcggccgttggtgatttctcttggtttgaaggatcattcccag 540 ||||| ||||||||||||||| | ||||| |||||||| ||| |||| |||||||| ||| Sbjct: 189721 agtggcagtggctcagctcggtcattggttatttctctgggtctgaaagatcattctcag 189662 Query: 541 ggaacattgaaa 552 | || ||||||| Sbjct: 189661 gtaagattgaaa 189650 Score = 52.0 bits (26), Expect = 0.003 Identities = 41/46 (89%) Strand = Plus / Minus Query: 437 agccactcctgctagcttgtgcacgtcaacttatcgagcatataag 482 |||||||||| | |||||| |||||||||||||| ||||| ||||| Sbjct: 192886 agccactcctacaagcttgcgcacgtcaacttattgagcacataag 192841 Score = 42.1 bits (21), Expect = 2.8 Identities = 36/41 (87%) Strand = Plus / Minus Query: 328 attgtgacacagattgggtgcatgggaaccatattagctgc 368 |||||| |||| || || ||||||||||||||| ||||||| Sbjct: 193942 attgtggcacaaatcggctgcatgggaaccatactagctgc 193902
>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence Length = 317137 Score = 79.8 bits (40), Expect = 1e-11 Identities = 55/60 (91%) Strand = Plus / Minus Query: 372 gaaagatgaaagtgtcttctctgatccaacctacaatgtatctgttctttttgggaagag 431 |||||| |||||||| ||||| || |||||||||||||| |||||||||||||||||||| Sbjct: 136171 gaaagacgaaagtgttttctcggacccaacctacaatgtgtctgttctttttgggaagag 136112 Score = 63.9 bits (32), Expect = 8e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 481 agtggtagtggctcagctcggccgttggtgatttctcttggtttgaaggatcattcccag 540 ||||| ||||||||||||||| | ||||| |||||||| ||| |||| |||||||| ||| Sbjct: 133257 agtggcagtggctcagctcggtcattggttatttctctgggtctgaaagatcattctcag 133198 Query: 541 ggaacattgaaa 552 | || ||||||| Sbjct: 133197 gtaagattgaaa 133186 Score = 52.0 bits (26), Expect = 0.003 Identities = 41/46 (89%) Strand = Plus / Minus Query: 437 agccactcctgctagcttgtgcacgtcaacttatcgagcatataag 482 |||||||||| | |||||| |||||||||||||| ||||| ||||| Sbjct: 136024 agccactcctacaagcttgcgcacgtcaacttattgagcacataag 135979 Score = 42.1 bits (21), Expect = 2.8 Identities = 36/41 (87%) Strand = Plus / Minus Query: 328 attgtgacacagattgggtgcatgggaaccatattagctgc 368 |||||| |||| || || ||||||||||||||| ||||||| Sbjct: 137080 attgtggcacaaatcggctgcatgggaaccatactagctgc 137040
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 63.9 bits (32), Expect = 8e-07 Identities = 58/67 (86%), Gaps = 6/67 (8%) Strand = Plus / Plus Query: 372 gaaagatgaaagtgtcttctctgatccaacctacaatgtatctgttctttttgggaagag 431 ||||||||||||||| || ||||||||||||||||| |||||||||||| ||||| Sbjct: 13329998 gaaagatgaaagtgttttttctgatccaacctacaa------tgttctttttggaaagag 13330051 Query: 432 ggatgag 438 ||||||| Sbjct: 13330052 ggatgag 13330058 Score = 52.0 bits (26), Expect = 0.003 Identities = 29/30 (96%) Strand = Plus / Plus Query: 243 tgtgccgcacaagtccctctccttggatat 272 ||||||||||||||||||||| |||||||| Sbjct: 13329013 tgtgccgcacaagtccctctcgttggatat 13329042 Score = 52.0 bits (26), Expect = 0.003 Identities = 35/38 (92%) Strand = Plus / Plus Query: 331 gtgacacagattgggtgcatgggaaccatattagctgc 368 |||||||| || || ||||||||||||||||||||||| Sbjct: 13329528 gtgacacaaataggatgcatgggaaccatattagctgc 13329565 Score = 50.1 bits (25), Expect = 0.012 Identities = 31/33 (93%) Strand = Plus / Plus Query: 509 tgatttctcttggtttgaaggatcattcccagg 541 |||| ||||||||| |||||||||||||||||| Sbjct: 13330806 tgatatctcttggtctgaaggatcattcccagg 13330838 Score = 46.1 bits (23), Expect = 0.18 Identities = 32/35 (91%) Strand = Plus / Plus Query: 448 ctagcttgtgcacgtcaacttatcgagcatataag 482 |||||||||||||| ||||||||||| || ||||| Sbjct: 13330145 ctagcttgtgcacgccaacttatcgaacacataag 13330179
>dbj|AP003331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088D01 Length = 146144 Score = 63.9 bits (32), Expect = 8e-07 Identities = 58/67 (86%), Gaps = 6/67 (8%) Strand = Plus / Plus Query: 372 gaaagatgaaagtgtcttctctgatccaacctacaatgtatctgttctttttgggaagag 431 ||||||||||||||| || ||||||||||||||||| |||||||||||| ||||| Sbjct: 70356 gaaagatgaaagtgttttttctgatccaacctacaa------tgttctttttggaaagag 70409 Query: 432 ggatgag 438 ||||||| Sbjct: 70410 ggatgag 70416 Score = 52.0 bits (26), Expect = 0.003 Identities = 29/30 (96%) Strand = Plus / Plus Query: 243 tgtgccgcacaagtccctctccttggatat 272 ||||||||||||||||||||| |||||||| Sbjct: 69371 tgtgccgcacaagtccctctcgttggatat 69400 Score = 52.0 bits (26), Expect = 0.003 Identities = 35/38 (92%) Strand = Plus / Plus Query: 331 gtgacacagattgggtgcatgggaaccatattagctgc 368 |||||||| || || ||||||||||||||||||||||| Sbjct: 69886 gtgacacaaataggatgcatgggaaccatattagctgc 69923 Score = 50.1 bits (25), Expect = 0.012 Identities = 31/33 (93%) Strand = Plus / Plus Query: 509 tgatttctcttggtttgaaggatcattcccagg 541 |||| ||||||||| |||||||||||||||||| Sbjct: 71164 tgatatctcttggtctgaaggatcattcccagg 71196 Score = 46.1 bits (23), Expect = 0.18 Identities = 32/35 (91%) Strand = Plus / Plus Query: 448 ctagcttgtgcacgtcaacttatcgagcatataag 482 |||||||||||||| ||||||||||| || ||||| Sbjct: 70503 ctagcttgtgcacgccaacttatcgaacacataag 70537
>gb|AC083943.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0044A10, from chromosome 10, complete sequence Length = 169270 Score = 52.0 bits (26), Expect = 0.003 Identities = 55/64 (85%), Gaps = 3/64 (4%) Strand = Plus / Minus Query: 481 agtggtagtggctca---gctcggccgttggtgatttctcttggtttgaaggatcattcc 537 ||||||||||||||| || ||| | ||| |||| ||||||||| |||||||||||||| Sbjct: 36497 agtggtagtggctcatcagcacggtcattgatgatatctcttggtctgaaggatcattcc 36438 Query: 538 cagg 541 |||| Sbjct: 36437 cagg 36434
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 50.1 bits (25), Expect = 0.012 Identities = 25/25 (100%) Strand = Plus / Minus Query: 51 tccccagcccggcgccgccaccgcc 75 ||||||||||||||||||||||||| Sbjct: 4979139 tccccagcccggcgccgccaccgcc 4979115
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 50.1 bits (25), Expect = 0.012 Identities = 25/25 (100%) Strand = Plus / Plus Query: 51 tccccagcccggcgccgccaccgcc 75 ||||||||||||||||||||||||| Sbjct: 4246944 tccccagcccggcgccgccaccgcc 4246968
>gb|AC079617.5| Homo sapiens BAC clone RP11-623K14 from 4, complete sequence Length = 112615 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 524 tgaaggatcattcccagggaaca 546 ||||||||||||||||||||||| Sbjct: 7254 tgaaggatcattcccagggaaca 7276
>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence Length = 168794 Score = 44.1 bits (22), Expect = 0.71 Identities = 25/26 (96%) Strand = Plus / Minus Query: 59 ccggcgccgccaccgccacgccgcct 84 ||||||||||| |||||||||||||| Sbjct: 144780 ccggcgccgccgccgccacgccgcct 144755
>gb|U72332.1|SCU72332 Saguaro cactus virus, complete genome Length = 3879 Score = 44.1 bits (22), Expect = 0.71 Identities = 22/22 (100%) Strand = Plus / Plus Query: 385 gtcttctctgatccaacctaca 406 |||||||||||||||||||||| Sbjct: 3326 gtcttctctgatccaacctaca 3347
>gb|DQ245137.1| Zea mays clone 13236 mRNA sequence Length = 806 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 agcccggcgccgccaccgcca 76 ||||||||||||||||||||| Sbjct: 526 agcccggcgccgccaccgcca 546
>gb|AC157538.19| Medicago truncatula clone mth2-150a17, complete sequence Length = 102530 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 369 taagaaagatgaaagtgtctt 389 ||||||||||||||||||||| Sbjct: 16431 taagaaagatgaaagtgtctt 16411
>gb|AC131239.20| Medicago truncatula clone mth2-18o15, complete sequence Length = 140751 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 369 taagaaagatgaaagtgtctt 389 ||||||||||||||||||||| Sbjct: 23303 taagaaagatgaaagtgtctt 23283
>gb|AC137618.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0090H02, complete sequence Length = 135231 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 cgccgccaccgccacgccgcc 83 ||||||||||||||||||||| Sbjct: 92526 cgccgccaccgccacgccgcc 92506
>gb|AC122048.2| Mus musculus BAC clone RP24-456G2 from 2, complete sequence Length = 153772 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 696 tgatctctagaaattatgtaa 716 ||||||||||||||||||||| Sbjct: 73871 tgatctctagaaattatgtaa 73851
>gb|AC099506.3| Homo sapiens chromosome 16 clone RP11-22H5, complete sequence Length = 186318 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 359 tattagctgctaagaaagatg 379 ||||||||||||||||||||| Sbjct: 173457 tattagctgctaagaaagatg 173437
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 cgccgccaccgccacgccgcc 83 ||||||||||||||||||||| Sbjct: 17465176 cgccgccaccgccacgccgcc 17465156
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 cgccgccaccgccacgccgcc 83 ||||||||||||||||||||| Sbjct: 14439750 cgccgccaccgccacgccgcc 14439730
>gb|AC092351.3| Homo sapiens chromosome 16 clone RP11-2L4, complete sequence Length = 158216 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 359 tattagctgctaagaaagatg 379 ||||||||||||||||||||| Sbjct: 2937 tattagctgctaagaaagatg 2917
>ref|XM_953508.1| Neurospora crassa OR74A hypothetical protein (NCU07556.1) partial mRNA Length = 5682 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 acaagaccgacattgtcatca 301 ||||||||||||||||||||| Sbjct: 4223 acaagaccgacattgtcatca 4243
>gb|AC124952.15| Medicago truncatula clone mth2-24m24, complete sequence Length = 134356 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 taagaaagatgaaagtgtctt 389 ||||||||||||||||||||| Sbjct: 54808 taagaaagatgaaagtgtctt 54828
>gb|AC154560.3| Mus musculus BAC clone RP23-400E20 from chromosome 17, complete sequence Length = 197657 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 653 tacacaagctgtcagagcaaa 673 ||||||||||||||||||||| Sbjct: 73913 tacacaagctgtcagagcaaa 73933
>emb|AL845373.12| Mouse DNA sequence from clone RP23-211L7 on chromosome 2, complete sequence Length = 228651 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 696 tgatctctagaaattatgtaa 716 ||||||||||||||||||||| Sbjct: 225053 tgatctctagaaattatgtaa 225033 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 124,944,715 Number of extensions: 6605954 Number of successful extensions: 132179 Number of sequences better than 10.0: 32 Number of HSP's gapped: 132173 Number of HSP's successfully gapped: 62 Length of query: 748 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 726 Effective length of database: 18,508,616,841 Effective search space: 13437255826566 Effective search space used: 13437255826566 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
