ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf87o20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001056989.1| Oryza sativa (japonica cultivar-group) Os03g0439700 (Os03g0439700) mRNA, complete cds Length = 1196 Score = 420 bits (212), Expect = e-114 Identities = 482/572 (84%) Strand = Plus / Plus Query: 218 aggaggagccggagagcagccgaagccgcttcgccgggggcggcctgagctgggacccca 277 ||||||||||||| ||||||| ||| |||||||||| |||| | ||||||||||||| Sbjct: 231 aggaggagccggaaggcagccgtagcggcttcgccggcggcgttccgagctgggaccccg 290 Query: 278 ggatggagatcggagtcccatacgagcaaagaccggttaacgagtactccgctctcaagg 337 || |||||||| |||||| | ||||||||||||||| |||||||||||||| ||||||| Sbjct: 291 ggctggagatccaagtccctttcgagcaaagaccggtgaacgagtactccgccctcaagg 350 Query: 338 agagcaccttgtattcgtgggcagagctcagtccaggctccttcttcatgcgcctaggca 397 | ||| | || |||||||||||||| || || || || |||||| |||||||||||| Sbjct: 351 atagcgtactctactcgtgggcagagctgagcccggggtcattcttcctgcgcctaggca 410 Query: 398 gcctgtgcctggtcacatttacagttctggcggccccaatctcagccgcaagtttcagtc 457 ||||||| ||| |||| || || || || || || || || |||| ||||||||||||| Sbjct: 411 gcctgtggctgatcaccttcacggtgctcgccgcgcccattgcagctgcaagtttcagtc 470 Query: 458 ccggaaaggatccgctcaagtttgtgctggctgctgggattgggaccctgctcctcgtat 517 | ||||||||||| ||||| || ||||| || ||||||||||| || ||||||||||| | Sbjct: 471 caggaaaggatccactcaaattcgtgctagcagctgggattggaactctgctcctcgtct 530 Query: 518 ctcttgtggttctcaggatttacctgggttggagctacgttggcgacaggctattgtcgg 577 || | || |||||| ||||||| |||||||||||||||||||| || ||||| ||||||| Sbjct: 531 ctttggtcgttctccggatttatctgggttggagctacgttggtgataggctgttgtcgg 590 Query: 578 cagttgtgccttatgaggaaaccggatggtacgatggccaaatgtgggtcaagccagcag 637 | |||||||| || || ||||||||||||||||| ||||||||||||||||||||| ||| Sbjct: 591 cggttgtgccgtacgaagaaaccggatggtacgacggccaaatgtgggtcaagccaccag 650 Query: 638 aggtgctggctcgcgacaggttattgggatcttacaaggtaaagccggtgatcaacctgc 697 |||| ||||||| |||||| | ||||||||||||||||||||||||||||| ||||||| Sbjct: 651 aggtattggctcgtgacaggctcttgggatcttacaaggtaaagccggtgattaacctgc 710 Query: 698 tcaaacagacactggtgggcacaggtgcgctgctcgtcggggcggtcgtactcttcgcct 757 | || ||||| ||||||||||| || || ||||| ||||| ||||| || ||||| | Sbjct: 711 tgaagcagacgctggtgggcaccggcgctctgctggtcggcgcggtgtcgctgttcgcgt 770 Query: 758 tcgccgtccccgtcgaggaattcgtccactcc 789 |||| | |||||||||||| ||| | |||||| Sbjct: 771 tcgcggcccccgtcgaggacttcctgcactcc 802 Score = 157 bits (79), Expect = 1e-34 Identities = 121/135 (89%) Strand = Plus / Plus Query: 862 gaggtgaggcaagacgacgacctcgctgcggctgctgcggaggccgccaatggacgcccg 921 |||||||||||||||||||||||||| || || || |||||||||||| | ||||| ||| Sbjct: 875 gaggtgaggcaagacgacgacctcgccgctgccgccgcggaggccgccgacggacggccg 934 Query: 922 gtttactgcagggaccgctactaccgggcgctcgccggcggtcagtactgcacctcagac 981 || |||||||||||||||||||||||||||||||||||||| |||||||||| | ||| Sbjct: 935 gtctactgcagggaccgctactaccgggcgctcgccggcgggcagtactgcaagtgggac 994 Query: 982 gacctgctcgactga 996 ||||||||| ||||| Sbjct: 995 gacctgctcaactga 1009
>emb|CT832898.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA014O09, full insert sequence Length = 1187 Score = 412 bits (208), Expect = e-111 Identities = 481/572 (84%) Strand = Plus / Plus Query: 218 aggaggagccggagagcagccgaagccgcttcgccgggggcggcctgagctgggacccca 277 ||||||||||||| ||||||| ||| |||||||||| |||| | ||||||||||||| Sbjct: 231 aggaggagccggaaggcagccgtagcggcttcgccggcggcgttccgagctgggaccccg 290 Query: 278 ggatggagatcggagtcccatacgagcaaagaccggttaacgagtactccgctctcaagg 337 || |||||||| |||||| | ||||||||||||||| |||||||||||||| ||||||| Sbjct: 291 ggctggagatccaagtccctttcgagcaaagaccggtgaacgagtactccgccctcaagg 350 Query: 338 agagcaccttgtattcgtgggcagagctcagtccaggctccttcttcatgcgcctaggca 397 | ||| | || |||||||||||||| || || || || |||||| |||||||||||| Sbjct: 351 atagcgtactctactcgtgggcagagctgagcccggggtcattcttcctgcgcctaggca 410 Query: 398 gcctgtgcctggtcacatttacagttctggcggccccaatctcagccgcaagtttcagtc 457 ||||||| ||| |||| || || || || || || || || |||| ||||||||||||| Sbjct: 411 gcctgtggctgatcaccttcacggtgctcgccgcgcccattgcagctgcaagtttcagtc 470 Query: 458 ccggaaaggatccgctcaagtttgtgctggctgctgggattgggaccctgctcctcgtat 517 | ||||||||||| ||||| || ||||| || ||||||||||| || ||||||||||| | Sbjct: 471 caggaaaggatccactcaaattcgtgctagcagctgggattggaactctgctcctcgtct 530 Query: 518 ctcttgtggttctcaggatttacctgggttggagctacgttggcgacaggctattgtcgg 577 || | || |||||| ||||||| |||||||||||||||||||| || ||||| ||||||| Sbjct: 531 ctttggtcgttctccggatttatctgggttggagctacgttggtgataggctgttgtcgg 590 Query: 578 cagttgtgccttatgaggaaaccggatggtacgatggccaaatgtgggtcaagccagcag 637 | |||||||| || || ||||||||||||||||| ||||||||||||||||||||| ||| Sbjct: 591 cggttgtgccgtacgaagaaaccggatggtacgacggccaaatgtgggtcaagccaccag 650 Query: 638 aggtgctggctcgcgacaggttattgggatcttacaaggtaaagccggtgatcaacctgc 697 |||| ||||||| || ||| | ||||||||||||||||||||||||||||| ||||||| Sbjct: 651 aggtattggctcgtgataggctcttgggatcttacaaggtaaagccggtgattaacctgc 710 Query: 698 tcaaacagacactggtgggcacaggtgcgctgctcgtcggggcggtcgtactcttcgcct 757 | || ||||| ||||||||||| || || ||||| ||||| ||||| || ||||| | Sbjct: 711 tgaagcagacgctggtgggcaccggcgctctgctggtcggcgcggtgtcgctgttcgcgt 770 Query: 758 tcgccgtccccgtcgaggaattcgtccactcc 789 |||| | |||||||||||| ||| | |||||| Sbjct: 771 tcgcggcccccgtcgaggacttcctgcactcc 802 Score = 157 bits (79), Expect = 1e-34 Identities = 121/135 (89%) Strand = Plus / Plus Query: 862 gaggtgaggcaagacgacgacctcgctgcggctgctgcggaggccgccaatggacgcccg 921 |||||||||||||||||||||||||| || || || |||||||||||| | ||||| ||| Sbjct: 875 gaggtgaggcaagacgacgacctcgccgctgccgccgcggaggccgccgacggacggccg 934 Query: 922 gtttactgcagggaccgctactaccgggcgctcgccggcggtcagtactgcacctcagac 981 || |||||||||||||||||||||||||||||||||||||| |||||||||| | ||| Sbjct: 935 gtctactgcagggaccgctactaccgggcgctcgccggcgggcagtactgcaagtgggac 994 Query: 982 gacctgctcgactga 996 ||||||||| ||||| Sbjct: 995 gacctgctcaactga 1009
>dbj|AK065720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041G12, full insert sequence Length = 1196 Score = 412 bits (208), Expect = e-111 Identities = 481/572 (84%) Strand = Plus / Plus Query: 218 aggaggagccggagagcagccgaagccgcttcgccgggggcggcctgagctgggacccca 277 ||||||||||||| ||||||| ||| |||||||||| |||| | ||||||||||||| Sbjct: 232 aggaggagccggaaggcagccgtagcggcttcgccggcggcgttccgagctgggaccccg 291 Query: 278 ggatggagatcggagtcccatacgagcaaagaccggttaacgagtactccgctctcaagg 337 || |||||||| |||||| | ||||||||||||||| |||||||||||||| ||||||| Sbjct: 292 ggctggagatccaagtccctttcgagcaaagaccggtgaacgagtactccgccctcaagg 351 Query: 338 agagcaccttgtattcgtgggcagagctcagtccaggctccttcttcatgcgcctaggca 397 | ||| | || |||||||||||||| || || || || |||||| |||||||||||| Sbjct: 352 atagcgtactctactcgtgggcagagctgagcccggggtcattcttcctgcgcctaggca 411 Query: 398 gcctgtgcctggtcacatttacagttctggcggccccaatctcagccgcaagtttcagtc 457 ||||||| ||| |||| || || || || || || || || |||| ||||||||||||| Sbjct: 412 gcctgtggctgatcaccttcacggtgctcgccgcgcccattgcagctgcaagtttcagtc 471 Query: 458 ccggaaaggatccgctcaagtttgtgctggctgctgggattgggaccctgctcctcgtat 517 | ||||||||||| ||||| || ||||| || ||||||||||| || ||||||||||| | Sbjct: 472 caggaaaggatccactcaaattcgtgctagcagctgggattggaactctgctcctcgtct 531 Query: 518 ctcttgtggttctcaggatttacctgggttggagctacgttggcgacaggctattgtcgg 577 || | || |||||| ||||||| |||||||||||||||||||| || ||||| ||||||| Sbjct: 532 ctttggtcgttctccggatttatctgggttggagctacgttggtgataggctgttgtcgg 591 Query: 578 cagttgtgccttatgaggaaaccggatggtacgatggccaaatgtgggtcaagccagcag 637 | |||||||| || || ||||||||||||||||| ||||||||| ||||||||||| ||| Sbjct: 592 cggttgtgccgtacgaagaaaccggatggtacgacggccaaatgcgggtcaagccaccag 651 Query: 638 aggtgctggctcgcgacaggttattgggatcttacaaggtaaagccggtgatcaacctgc 697 |||| ||||||| |||||| | ||||||||||||||||||||||||||||| ||||||| Sbjct: 652 aggtattggctcgtgacaggctcttgggatcttacaaggtaaagccggtgattaacctgc 711 Query: 698 tcaaacagacactggtgggcacaggtgcgctgctcgtcggggcggtcgtactcttcgcct 757 | || ||||| ||||||||||| || || ||||| ||||| ||||| || ||||| | Sbjct: 712 tgaagcagacgctggtgggcaccggcgctctgctggtcggcgcggtgtcgctgttcgcgt 771 Query: 758 tcgccgtccccgtcgaggaattcgtccactcc 789 |||| | |||||||||||| ||| | |||||| Sbjct: 772 tcgcggcccccgtcgaggacttcctgcactcc 803 Score = 157 bits (79), Expect = 1e-34 Identities = 121/135 (89%) Strand = Plus / Plus Query: 862 gaggtgaggcaagacgacgacctcgctgcggctgctgcggaggccgccaatggacgcccg 921 |||||||||||||||||||||||||| || || || |||||||||||| | ||||| ||| Sbjct: 876 gaggtgaggcaagacgacgacctcgccgctgccgccgcggaggccgccgacggacggccg 935 Query: 922 gtttactgcagggaccgctactaccgggcgctcgccggcggtcagtactgcacctcagac 981 || |||||||||||||||||||||||||||||||||||||| |||||||||| | ||| Sbjct: 936 gtctactgcagggaccgctactaccgggcgctcgccggcgggcagtactgcaagtgggac 995 Query: 982 gacctgctcgactga 996 ||||||||| ||||| Sbjct: 996 gacctgctcaactga 1010
>gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence Length = 159579 Score = 157 bits (79), Expect = 1e-34 Identities = 121/135 (89%) Strand = Plus / Minus Query: 862 gaggtgaggcaagacgacgacctcgctgcggctgctgcggaggccgccaatggacgcccg 921 |||||||||||||||||||||||||| || || || |||||||||||| | ||||| ||| Sbjct: 154192 gaggtgaggcaagacgacgacctcgccgctgccgccgcggaggccgccgacggacggccg 154133 Query: 922 gtttactgcagggaccgctactaccgggcgctcgccggcggtcagtactgcacctcagac 981 || |||||||||||||||||||||||||||||||||||||| |||||||||| | ||| Sbjct: 154132 gtctactgcagggaccgctactaccgggcgctcgccggcgggcagtactgcaagtgggac 154073 Query: 982 gacctgctcgactga 996 ||||||||| ||||| Sbjct: 154072 gacctgctcaactga 154058 Score = 125 bits (63), Expect = 4e-25 Identities = 90/99 (90%) Strand = Plus / Minus Query: 543 gggttggagctacgttggcgacaggctattgtcggcagttgtgccttatgaggaaaccgg 602 |||||||||||||||||| || ||||| |||||||| |||||||| || || |||||||| Sbjct: 154830 gggttggagctacgttggtgataggctgttgtcggcggttgtgccgtacgaagaaaccgg 154771 Query: 603 atggtacgatggccaaatgtgggtcaagccagcagaggt 641 ||||||||| ||||||||||||||||||||| ||||||| Sbjct: 154770 atggtacgacggccaaatgtgggtcaagccaccagaggt 154732 Score = 81.8 bits (41), Expect = 5e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 218 aggaggagccggagagcagccgaagccgcttcgccgggggcggcctgagctgggacccca 277 ||||||||||||| ||||||| ||| |||||||||| |||| | ||||||||||||| Sbjct: 155745 aggaggagccggaaggcagccgtagcggcttcgccggcggcgttccgagctgggaccccg 155686 Query: 278 ggatggagatcggagtcccatacgagcaaagaccggt 314 || |||||||| |||||| | ||||||||||||||| Sbjct: 155685 ggctggagatccaagtccctttcgagcaaagaccggt 155649 Score = 77.8 bits (39), Expect = 8e-11 Identities = 123/151 (81%) Strand = Plus / Minus Query: 316 aacgagtactccgctctcaaggagagcaccttgtattcgtgggcagagctcagtccaggc 375 |||||||||||||| |||||||| ||| | || |||||||||||||| || || || Sbjct: 155460 aacgagtactccgccctcaaggatagcgtactctactcgtgggcagagctgagcccgggg 155401 Query: 376 tccttcttcatgcgcctaggcagcctgtgcctggtcacatttacagttctggcggcccca 435 || |||||| ||||||||||||||||||| ||| |||| || || || || || || || Sbjct: 155400 tcattcttcctgcgcctaggcagcctgtggctgatcaccttcacggtgctcgccgcgccc 155341 Query: 436 atctcagccgcaagtttcagtcccggaaagg 466 || |||| |||||||||||||| ||||||| Sbjct: 155340 attgcagctgcaagtttcagtccaggaaagg 155310 Score = 71.9 bits (36), Expect = 5e-09 Identities = 96/116 (82%) Strand = Plus / Minus Query: 674 aggtaaagccggtgatcaacctgctcaaacagacactggtgggcacaggtgcgctgctcg 733 |||||||||||||||| |||||||| || ||||| ||||||||||| || || ||||| | Sbjct: 154452 aggtaaagccggtgattaacctgctgaagcagacgctggtgggcaccggcgctctgctgg 154393 Query: 734 tcggggcggtcgtactcttcgccttcgccgtccccgtcgaggaattcgtccactcc 789 |||| ||||| || ||||| ||||| | |||||||||||| ||| | |||||| Sbjct: 154392 tcggcgcggtgtcgctgttcgcgttcgcggcccccgtcgaggacttcctgcactcc 154337 Score = 58.0 bits (29), Expect = 7e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 464 aggatccgctcaagtttgtgctggctgctgggattgggaccctgctcctcgtatctcttg 523 ||||||| ||||| || ||||| || ||||||||||| || ||||||||||| ||| | | Sbjct: 155101 aggatccactcaaattcgtgctagcagctgggattggaactctgctcctcgtctctttgg 155042 Query: 524 tggttctcaggatttacctgg 544 | |||||| ||||||| |||| Sbjct: 155041 tcgttctccggatttatctgg 155021 Score = 46.1 bits (23), Expect = 0.27 Identities = 32/35 (91%) Strand = Plus / Minus Query: 644 tggctcgcgacaggttattgggatcttacaaggta 678 ||||||| |||||| | |||||||||||||||||| Sbjct: 154585 tggctcgtgacaggctcttgggatcttacaaggta 154551
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 157 bits (79), Expect = 1e-34 Identities = 121/135 (89%) Strand = Plus / Minus Query: 862 gaggtgaggcaagacgacgacctcgctgcggctgctgcggaggccgccaatggacgcccg 921 |||||||||||||||||||||||||| || || || |||||||||||| | ||||| ||| Sbjct: 18381802 gaggtgaggcaagacgacgacctcgccgctgccgccgcggaggccgccgacggacggccg 18381743 Query: 922 gtttactgcagggaccgctactaccgggcgctcgccggcggtcagtactgcacctcagac 981 || |||||||||||||||||||||||||||||||||||||| |||||||||| | ||| Sbjct: 18381742 gtctactgcagggaccgctactaccgggcgctcgccggcgggcagtactgcaagtgggac 18381683 Query: 982 gacctgctcgactga 996 ||||||||| ||||| Sbjct: 18381682 gacctgctcaactga 18381668 Score = 125 bits (63), Expect = 4e-25 Identities = 90/99 (90%) Strand = Plus / Minus Query: 543 gggttggagctacgttggcgacaggctattgtcggcagttgtgccttatgaggaaaccgg 602 |||||||||||||||||| || ||||| |||||||| |||||||| || || |||||||| Sbjct: 18382440 gggttggagctacgttggtgataggctgttgtcggcggttgtgccgtacgaagaaaccgg 18382381 Query: 603 atggtacgatggccaaatgtgggtcaagccagcagaggt 641 ||||||||| ||||||||||||||||||||| ||||||| Sbjct: 18382380 atggtacgacggccaaatgtgggtcaagccaccagaggt 18382342 Score = 81.8 bits (41), Expect = 5e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 218 aggaggagccggagagcagccgaagccgcttcgccgggggcggcctgagctgggacccca 277 ||||||||||||| ||||||| ||| |||||||||| |||| | ||||||||||||| Sbjct: 18383355 aggaggagccggaaggcagccgtagcggcttcgccggcggcgttccgagctgggaccccg 18383296 Query: 278 ggatggagatcggagtcccatacgagcaaagaccggt 314 || |||||||| |||||| | ||||||||||||||| Sbjct: 18383295 ggctggagatccaagtccctttcgagcaaagaccggt 18383259 Score = 77.8 bits (39), Expect = 8e-11 Identities = 123/151 (81%) Strand = Plus / Minus Query: 316 aacgagtactccgctctcaaggagagcaccttgtattcgtgggcagagctcagtccaggc 375 |||||||||||||| |||||||| ||| | || |||||||||||||| || || || Sbjct: 18383070 aacgagtactccgccctcaaggatagcgtactctactcgtgggcagagctgagcccgggg 18383011 Query: 376 tccttcttcatgcgcctaggcagcctgtgcctggtcacatttacagttctggcggcccca 435 || |||||| ||||||||||||||||||| ||| |||| || || || || || || || Sbjct: 18383010 tcattcttcctgcgcctaggcagcctgtggctgatcaccttcacggtgctcgccgcgccc 18382951 Query: 436 atctcagccgcaagtttcagtcccggaaagg 466 || |||| |||||||||||||| ||||||| Sbjct: 18382950 attgcagctgcaagtttcagtccaggaaagg 18382920 Score = 71.9 bits (36), Expect = 5e-09 Identities = 96/116 (82%) Strand = Plus / Minus Query: 674 aggtaaagccggtgatcaacctgctcaaacagacactggtgggcacaggtgcgctgctcg 733 |||||||||||||||| |||||||| || ||||| ||||||||||| || || ||||| | Sbjct: 18382062 aggtaaagccggtgattaacctgctgaagcagacgctggtgggcaccggcgctctgctgg 18382003 Query: 734 tcggggcggtcgtactcttcgccttcgccgtccccgtcgaggaattcgtccactcc 789 |||| ||||| || ||||| ||||| | |||||||||||| ||| | |||||| Sbjct: 18382002 tcggcgcggtgtcgctgttcgcgttcgcggcccccgtcgaggacttcctgcactcc 18381947 Score = 58.0 bits (29), Expect = 7e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 464 aggatccgctcaagtttgtgctggctgctgggattgggaccctgctcctcgtatctcttg 523 ||||||| ||||| || ||||| || ||||||||||| || ||||||||||| ||| | | Sbjct: 18382711 aggatccactcaaattcgtgctagcagctgggattggaactctgctcctcgtctctttgg 18382652 Query: 524 tggttctcaggatttacctgg 544 | |||||| ||||||| |||| Sbjct: 18382651 tcgttctccggatttatctgg 18382631 Score = 46.1 bits (23), Expect = 0.27 Identities = 32/35 (91%) Strand = Plus / Minus Query: 644 tggctcgcgacaggttattgggatcttacaaggta 678 ||||||| |||||| | |||||||||||||||||| Sbjct: 18382195 tggctcgtgacaggctcttgggatcttacaaggta 18382161
>ref|NM_126137.2| Arabidopsis thaliana unknown protein (AT5G67370) mRNA, complete cds Length = 1160 Score = 115 bits (58), Expect = 4e-22 Identities = 142/170 (83%) Strand = Plus / Plus Query: 535 atttacctgggttggagctacgttggcgacaggctattgtcggcagttgtgccttatgag 594 ||||| ||||| |||||||| ||||| || || ||| | || |||||| | ||||| || Sbjct: 576 atttatctggggtggagctatgttggagatagactactttctgcagttataccttacgaa 635 Query: 595 gaaaccggatggtacgatggccaaatgtgggtcaagccagcagaggtgctggctcgcgac 654 || | |||||||| ||||| |||||||||||||| ||| | |||||| ||||||||||| Sbjct: 636 gagagtggatggtatgatggacaaatgtgggtcaaaccacctgaggtgttggctcgcgac 695 Query: 655 aggttattgggatcttacaaggtaaagccggtgatcaacctgctcaaaca 704 ||||| ||||| ||||||||||| ||||| |||||||| |||||||||| Sbjct: 696 aggttgttgggttcttacaaggtgaagccagtgatcaagatgctcaaaca 745
>gb|AY051028.1| Arabidopsis thaliana unknown protein (At5g67370) mRNA, complete cds Length = 1015 Score = 115 bits (58), Expect = 4e-22 Identities = 142/170 (83%) Strand = Plus / Plus Query: 535 atttacctgggttggagctacgttggcgacaggctattgtcggcagttgtgccttatgag 594 ||||| ||||| |||||||| ||||| || || ||| | || |||||| | ||||| || Sbjct: 499 atttatctggggtggagctatgttggagatagactactttctgcagttataccttacgaa 558 Query: 595 gaaaccggatggtacgatggccaaatgtgggtcaagccagcagaggtgctggctcgcgac 654 || | |||||||| ||||| |||||||||||||| ||| | |||||| ||||||||||| Sbjct: 559 gagagtggatggtatgatggacaaatgtgggtcaaaccacctgaggtgttggctcgcgac 618 Query: 655 aggttattgggatcttacaaggtaaagccggtgatcaacctgctcaaaca 704 ||||| ||||| ||||||||||| ||||| |||||||| |||||||||| Sbjct: 619 aggttgttgggttcttacaaggtgaagccagtgatcaagatgctcaaaca 668
>gb|AF360127.1| Arabidopsis thaliana unknown protein (At5g67370) mRNA, complete cds Length = 1175 Score = 115 bits (58), Expect = 4e-22 Identities = 142/170 (83%) Strand = Plus / Plus Query: 535 atttacctgggttggagctacgttggcgacaggctattgtcggcagttgtgccttatgag 594 ||||| ||||| |||||||| ||||| || || ||| | || |||||| | ||||| || Sbjct: 574 atttatctggggtggagctatgttggagatagactactttctgcagttataccttacgaa 633 Query: 595 gaaaccggatggtacgatggccaaatgtgggtcaagccagcagaggtgctggctcgcgac 654 || | |||||||| ||||| |||||||||||||| ||| | |||||| ||||||||||| Sbjct: 634 gagagtggatggtatgatggacaaatgtgggtcaaaccacctgaggtgttggctcgcgac 693 Query: 655 aggttattgggatcttacaaggtaaagccggtgatcaacctgctcaaaca 704 ||||| ||||| ||||||||||| ||||| |||||||| |||||||||| Sbjct: 694 aggttgttgggttcttacaaggtgaagccagtgatcaagatgctcaaaca 743
>emb|BX830090.1|CNS0A1BU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB59ZC05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 529 Score = 111 bits (56), Expect = 5e-21 Identities = 92/104 (88%) Strand = Plus / Plus Query: 601 ggatggtacgatggccaaatgtgggtcaagccagcagaggtgctggctcgcgacaggtta 660 |||||||| ||||| |||||||||||||| ||| | |||||| |||||||||||||||| Sbjct: 56 ggatggtatgatggacaaatgtgggtcaaaccacctgaggtgttggctcgcgacaggttg 115 Query: 661 ttgggatcttacaaggtaaagccggtgatcaacctgctcaaaca 704 ||||| ||||||||||| ||||| |||||||| |||||||||| Sbjct: 116 ttgggttcttacaaggtgaagccagtgatcaagatgctcaaaca 159
>dbj|AB007645.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8K14 Length = 72698 Score = 60.0 bits (30), Expect = 2e-05 Identities = 39/42 (92%) Strand = Plus / Minus Query: 638 aggtgctggctcgcgacaggttattgggatcttacaaggtaa 679 ||||| |||||||||||||||| ||||| ||||||||||||| Sbjct: 30080 aggtgttggctcgcgacaggttgttgggttcttacaaggtaa 30039 Score = 42.1 bits (21), Expect = 4.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 601 ggatggtacgatggccaaatgtgggtcaa 629 |||||||| ||||| |||||||||||||| Sbjct: 30518 ggatggtatgatggacaaatgtgggtcaa 30490
>emb|AJ339470.1|HSA339470 Homo sapiens genomic sequence surrounding NotI site, clone NR5-HB10RS Length = 723 Score = 46.1 bits (23), Expect = 0.27 Identities = 23/23 (100%) Strand = Plus / Plus Query: 258 cggcctgagctgggaccccagga 280 ||||||||||||||||||||||| Sbjct: 254 cggcctgagctgggaccccagga 276
>gb|AC099704.7| Mus musculus chromosome 15, clone RP23-256A2, complete sequence Length = 204704 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 835 agagaggagctcctgaagctgc 856 |||||||||||||||||||||| Sbjct: 62744 agagaggagctcctgaagctgc 62765
>gb|AC131773.3| Mus musculus BAC clone RP24-308A19 from chromosome 15, complete sequence Length = 168423 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 835 agagaggagctcctgaagctgc 856 |||||||||||||||||||||| Sbjct: 76638 agagaggagctcctgaagctgc 76617
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 118 gcatccccgcggcagttcgccggagc 143 ||||||||||||| |||||||||||| Sbjct: 2538048 gcatccccgcggccgttcgccggagc 2538073
>emb|AL353147.10| Human DNA sequence from clone RP11-188P8 on chromosome 10 Contains the 3' end of a novel gene, a NADH dehydrogenase 2 (MTND2) pseudogene, the 5' end of the gene for tumor endothelial marker 7-related precursor (TEM7R) (FLJ14623) and a CpG island, complete sequence Length = 98002 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 214 aaggaggaggagccggagagca 235 |||||||||||||||||||||| Sbjct: 83487 aaggaggaggagccggagagca 83466
>gb|AC016292.26| Homo sapiens chromosome 17, clone RP11-22G12, complete sequence Length = 104435 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 269 gggaccccaggatggagatcgg 290 |||||||||||||||||||||| Sbjct: 41892 gggaccccaggatggagatcgg 41913
>gb|AC107911.21| Homo sapiens chromosome 17, clone CTD-2507J6, complete sequence Length = 88883 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 269 gggaccccaggatggagatcgg 290 |||||||||||||||||||||| Sbjct: 66169 gggaccccaggatggagatcgg 66148
>gb|CP000469.1| Shewanella sp. ANA-3, complete genome Length = 4972204 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1061 acaagttaagcaaatgtatct 1081 ||||||||||||||||||||| Sbjct: 3092274 acaagttaagcaaatgtatct 3092254
>gb|CP000478.1| Syntrophobacter fumaroxidans MPOB, complete genome Length = 4990251 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 941 actaccgggcgctcgccggcggtca 965 |||||||||||||||||| |||||| Sbjct: 872431 actaccgggcgctcgccgtcggtca 872407
>ref|XM_839395.1| Trypanosoma brucei TREU927 myosin IB heavy chain, putative (Tb927_4.3380) mRNA, complete cds Length = 3504 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 888 tgcggctgctgcggaggccgc 908 ||||||||||||||||||||| Sbjct: 3396 tgcggctgctgcggaggccgc 3416
>ref|NM_001071698.1| Oryza sativa (japonica cultivar-group) Os10g0534700 (Os10g0534700) mRNA, complete cds Length = 2121 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 215 aggaggaggagccggagagcagccg 239 ||||||||||||||||||| ||||| Sbjct: 176 aggaggaggagccggagagaagccg 200
>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence Length = 23011544 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 aaagaggctgaggggcgtggc 197 ||||||||||||||||||||| Sbjct: 4168397 aaagaggctgaggggcgtggc 4168417
>gb|AC080131.9| Trypanosoma brucei chromosome 4 clone RPCI93-2H8, complete sequence Length = 163689 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 888 tgcggctgctgcggaggccgc 908 ||||||||||||||||||||| Sbjct: 2457 tgcggctgctgcggaggccgc 2477
>gb|AC023489.8| Trypanosoma brucei chromosome 4 clone RPCI93-26G5, complete sequence Length = 79024 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 888 tgcggctgctgcggaggccgc 908 ||||||||||||||||||||| Sbjct: 4112 tgcggctgctgcggaggccgc 4092
>ref|XM_820259.1| Trypanosoma brucei TREU927 clone RPCI93-26G5 myosin IB heavy chain (Tb927.4.3380) partial mRNA Length = 3504 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 888 tgcggctgctgcggaggccgc 908 ||||||||||||||||||||| Sbjct: 3396 tgcggctgctgcggaggccgc 3416
>gb|AC146561.22| Medicago truncatula clone mth2-12j18, complete sequence Length = 135940 Score = 42.1 bits (21), Expect = 4.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 601 ggatggtacgatggccaaatgtgggtcaagcca 633 ||||||||||| || || ||||||||||||||| Sbjct: 76646 ggatggtacgacggacagatgtgggtcaagcca 76678
>gb|AC092389.4| Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete sequence Length = 194361 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 215 aggaggaggagccggagagcagccg 239 ||||||||||||||||||| ||||| Sbjct: 157149 aggaggaggagccggagagaagccg 157125
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 634 gcagaggtgctggctcgcgac 654 ||||||||||||||||||||| Sbjct: 977546 gcagaggtgctggctcgcgac 977526
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 215 aggaggaggagccggagagcagccg 239 ||||||||||||||||||| ||||| Sbjct: 20279414 aggaggaggagccggagagaagccg 20279390
>gb|AC092217.1|AC092217 Drosophila melanogaster, chromosome 2L, region 24D-24E, BAC clone BACR11D14, complete sequence Length = 158347 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 aaagaggctgaggggcgtggc 197 ||||||||||||||||||||| Sbjct: 114488 aaagaggctgaggggcgtggc 114468
>dbj|AK119966.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-D10, full insert sequence Length = 2267 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 215 aggaggaggagccggagagcagccg 239 ||||||||||||||||||| ||||| Sbjct: 1425 aggaggaggagccggagagaagccg 1401
>dbj|AK071861.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123I12, full insert sequence Length = 2123 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 215 aggaggaggagccggagagcagccg 239 ||||||||||||||||||| ||||| Sbjct: 177 aggaggaggagccggagagaagccg 201
>ref|XM_318428.2| Anopheles gambiae str. PEST ENSANGP00000014841 (ENSANGG00000012352), mRNA Length = 1141 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 904 gccgccaatggacgcccggtt 924 ||||||||||||||||||||| Sbjct: 909 gccgccaatggacgcccggtt 929
>gb|AC004371.1|AC004371 Drosophila melanogaster DNA sequence (P1 DS06482 (D76)), complete sequence Length = 87124 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 aaagaggctgaggggcgtggc 197 ||||||||||||||||||||| Sbjct: 47347 aaagaggctgaggggcgtggc 47367 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 166,318,913 Number of extensions: 8940509 Number of successful extensions: 174516 Number of sequences better than 10.0: 34 Number of HSP's gapped: 174501 Number of HSP's successfully gapped: 50 Length of query: 1116 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1093 Effective length of database: 18,503,978,556 Effective search space: 20224848561708 Effective search space used: 20224848561708 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
