ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf85e04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT833835.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA025P11, full insert sequence Length = 1210 Score = 313 bits (158), Expect = 8e-82 Identities = 355/421 (84%), Gaps = 6/421 (1%) Strand = Plus / Plus Query: 378 acacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccat 437 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 415 acacgcatgtgcaccaagtataacactgcagaaggctgcaaatttggtgacaagtgccat 474 Query: 438 ttcgcccatggtgagagggagcttggcaggccaccatcctcctacatgtcccaggaaagt 497 |||||||||||||||||||| ||||||| |||| | | |||||||||| || ||| Sbjct: 475 ttcgcccatggtgagagggaacttggcaagccagctt------acatgtcccatgagagt 528 Query: 498 tcctacgcacctcctacgggtggtcgatatggaggtcgacacgaaccacctcctccagct 557 || || ||||||| |||||||||||||||||| |||| ||||||||||| ||||| Sbjct: 529 gccatggctcctcctatgggtggtcgatatggaggccgacctgaaccacctccaccagcc 588 Query: 558 tcgatgggccctccagccggaaactttggcgcctcgtctacctgcaaggtcagtgtcgat 617 | ||||| |||||||| ||||||||||| || || |||| |||| |||| || ||| Sbjct: 589 gctatgggtcctccagcaggaaactttggtgcatctgctactgccaagatcagcgttgat 648 Query: 618 gccgctctcgccggaggcataatcgggaagggtggggtcaacacgaagcagatctgccgt 677 ||| | || || || |||||||| ||||||||||| ||||||||||||||||| ||||| Sbjct: 649 gcctcgcttgctggtggcataattgggaagggtggagtcaacacgaagcagatatgccga 708 Query: 678 gtcacgggggtcaagctctcgatacgcgaccacgaatcaaacccagacttgaagaacatt 737 || || |||||||||||||| ||||| ||||| |||||| | || || ||||||||||| Sbjct: 709 gtaactggggtcaagctctcaatacgtgaccatgaatcagattcaaacctgaagaacatt 768 Query: 738 gagctcgaaggcagttttgaccagataaagcaggccaacgacatggtgcgcgatctcatt 797 ||||||||||||| ||| ||||||||||||||||| | | |||||||| | || |||||| Sbjct: 769 gagctcgaaggcaatttcgaccagataaagcaggcaagcaacatggtgggtgagctcatt 828 Query: 798 g 798 | Sbjct: 829 g 829 Score = 270 bits (136), Expect = 1e-68 Identities = 235/268 (87%) Strand = Plus / Plus Query: 98 cgccgcccgcaagagatcccggccggagtccgccaacggaggcgccgcaggcgggaagcg 157 ||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||| Sbjct: 114 cgccgcccgcaagagatcccggccggacacggccaacggaggcgccgccggagggaagcg 173 Query: 158 ctcgagagaatcggagtcacaacaaactggtctatcaagcaaatcgaagccttgcaccaa 217 |||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct: 174 ctcgagagaaacggagtcatttcaaactggtctatcaagcaaattgaagccttgcaccaa 233 Query: 218 gtttttcagcactattgggtgcccctttggtgagggctgtcacttcgcgcactttgtccc 277 ||||||||||||||| || ||||| ||||| ||||| ||||| ||| ||||||||||||| Sbjct: 234 gtttttcagcactatcggatgcccttttggcgagggttgtcatttctcgcactttgtccc 293 Query: 278 tggtgggtaccaggcagtatcaaaatcacacaacctaggccatgctgctgtgtctgcacc 337 ||||||||| || |||||| ||||| ||| ||| |||||| | | |||||| ||||||| Sbjct: 294 tggtgggtatcaagcagtagcaaaaacactcaatctaggcaacccagctgtgcctgcacc 353 Query: 338 gtcaagaactcctgcagatcatgctgct 365 | ||||| ||||| |||||||||||| Sbjct: 354 ggcaagagctcctatggatcatgctgct 381 Score = 117 bits (59), Expect = 9e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 885 ggcaggagcaactacaagaccaagatatgcgagaacttcctcaagggtacctgcacgttt 944 |||||||||||||||||||||||| | |||||||||||| | ||||| ||||||||||| Sbjct: 913 ggcaggagcaactacaagaccaagctgtgcgagaacttcgtgaagggaacctgcacgttc 972 Query: 945 ggcgagcgctgccactttgcccatggcgagaccgaacagcggaaggg 991 ||||| || |||||||| || |||||||||| ||| ||||||||||| Sbjct: 973 ggcgaccgatgccacttcgctcatggcgagaacgagcagcggaaggg 1019
>emb|CR855038.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H1005F08, complete sequence Length = 198101 Score = 313 bits (158), Expect = 8e-82 Identities = 355/421 (84%), Gaps = 6/421 (1%) Strand = Plus / Plus Query: 378 acacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccat 437 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 87254 acacgcatgtgcaccaagtataacactgcagaaggctgcaaatttggtgacaagtgccat 87313 Query: 438 ttcgcccatggtgagagggagcttggcaggccaccatcctcctacatgtcccaggaaagt 497 |||||||||||||||||||| ||||||| |||| | | |||||||||| || ||| Sbjct: 87314 ttcgcccatggtgagagggaacttggcaagccagctt------acatgtcccatgagagt 87367 Query: 498 tcctacgcacctcctacgggtggtcgatatggaggtcgacacgaaccacctcctccagct 557 || || ||||||| |||||||||||||||||| |||| ||||||||||| ||||| Sbjct: 87368 gccatggctcctcctatgggtggtcgatatggaggccgacctgaaccacctccaccagcc 87427 Query: 558 tcgatgggccctccagccggaaactttggcgcctcgtctacctgcaaggtcagtgtcgat 617 | ||||| |||||||| ||||||||||| || || |||| |||| |||| || ||| Sbjct: 87428 gctatgggtcctccagcaggaaactttggtgcatctgctactgccaagatcagcgttgat 87487 Query: 618 gccgctctcgccggaggcataatcgggaagggtggggtcaacacgaagcagatctgccgt 677 ||| | || || || |||||||| ||||||||||| ||||||||||||||||| ||||| Sbjct: 87488 gcctcgcttgctggtggcataattgggaagggtggagtcaacacgaagcagatatgccga 87547 Query: 678 gtcacgggggtcaagctctcgatacgcgaccacgaatcaaacccagacttgaagaacatt 737 || || |||||||||||||| ||||| ||||| |||||| | || || ||||||||||| Sbjct: 87548 gtaactggggtcaagctctcaatacgtgaccatgaatcagattcaaacctgaagaacatt 87607 Query: 738 gagctcgaaggcagttttgaccagataaagcaggccaacgacatggtgcgcgatctcatt 797 ||||||||||||| ||| ||||||||||||||||| | | |||||||| | || |||||| Sbjct: 87608 gagctcgaaggcaatttcgaccagataaagcaggcaagcaacatggtgggtgagctcatt 87667 Query: 798 g 798 | Sbjct: 87668 g 87668 Score = 117 bits (59), Expect = 9e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 885 ggcaggagcaactacaagaccaagatatgcgagaacttcctcaagggtacctgcacgttt 944 |||||||||||||||||||||||| | |||||||||||| | ||||| ||||||||||| Sbjct: 87752 ggcaggagcaactacaagaccaagctgtgcgagaacttcgtgaagggaacctgcacgttc 87811 Query: 945 ggcgagcgctgccactttgcccatggcgagaccgaacagcggaaggg 991 ||||| || |||||||| || |||||||||| ||| ||||||||||| Sbjct: 87812 ggcgaccgatgccacttcgctcatggcgagaacgagcagcggaaggg 87858 Score = 99.6 bits (50), Expect = 2e-17 Identities = 119/142 (83%) Strand = Plus / Plus Query: 224 cagcactattgggtgcccctttggtgagggctgtcacttcgcgcactttgtccctggtgg 283 ||||||||| || ||||| ||||| ||||| ||||| ||| ||||||||||||||||||| Sbjct: 87079 cagcactatcggatgcccttttggcgagggttgtcatttctcgcactttgtccctggtgg 87138 Query: 284 gtaccaggcagtatcaaaatcacacaacctaggccatgctgctgtgtctgcaccgtcaag 343 ||| || |||||| ||||| ||| ||| |||||| | | |||||| |||||||| |||| Sbjct: 87139 gtatcaagcagtagcaaaaacactcaatctaggcaacccagctgtgcctgcaccggcaag 87198 Query: 344 aactcctgcagatcatgctgct 365 | ||||| |||||||||||| Sbjct: 87199 agctcctatggatcatgctgct 87220 Score = 95.6 bits (48), Expect = 3e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 98 cgccgcccgcaagagatcccggccggagtccgccaacggaggcgccgcaggcgggaagcg 157 ||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||| Sbjct: 85056 cgccgcccgcaagagatcccggccggacacggccaacggaggcgccgccggagggaagcg 85115 Query: 158 ctcgagag 165 |||||||| Sbjct: 85116 ctcgagag 85123 Score = 85.7 bits (43), Expect = 3e-13 Identities = 46/47 (97%) Strand = Plus / Plus Query: 180 caaactggtctatcaagcaaatcgaagccttgcaccaagtttttcag 226 |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 86093 caaactggtctatcaagcaaattgaagccttgcaccaagtttttcag 86139
>ref|NM_001060714.1| Oryza sativa (japonica cultivar-group) Os04g0665700 (Os04g0665700) mRNA, complete cds Length = 1348 Score = 313 bits (158), Expect = 8e-82 Identities = 355/421 (84%), Gaps = 6/421 (1%) Strand = Plus / Plus Query: 378 acacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccat 437 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 438 acacgcatgtgcaccaagtataacactgcagaaggctgcaaatttggtgacaagtgccat 497 Query: 438 ttcgcccatggtgagagggagcttggcaggccaccatcctcctacatgtcccaggaaagt 497 |||||||||||||||||||| ||||||| |||| | | |||||||||| || ||| Sbjct: 498 ttcgcccatggtgagagggaacttggcaagccagctt------acatgtcccatgagagt 551 Query: 498 tcctacgcacctcctacgggtggtcgatatggaggtcgacacgaaccacctcctccagct 557 || || ||||||| |||||||||||||||||| |||| ||||||||||| ||||| Sbjct: 552 gccatggctcctcctatgggtggtcgatatggaggccgacctgaaccacctccaccagcc 611 Query: 558 tcgatgggccctccagccggaaactttggcgcctcgtctacctgcaaggtcagtgtcgat 617 | ||||| |||||||| ||||||||||| || || |||| |||| |||| || ||| Sbjct: 612 gctatgggtcctccagcaggaaactttggtgcatctgctactgccaagatcagcgttgat 671 Query: 618 gccgctctcgccggaggcataatcgggaagggtggggtcaacacgaagcagatctgccgt 677 ||| | || || || |||||||| ||||||||||| ||||||||||||||||| ||||| Sbjct: 672 gcctcgcttgctggtggcataattgggaagggtggagtcaacacgaagcagatatgccga 731 Query: 678 gtcacgggggtcaagctctcgatacgcgaccacgaatcaaacccagacttgaagaacatt 737 || || |||||||||||||| ||||| ||||| |||||| | || || ||||||||||| Sbjct: 732 gtaactggggtcaagctctcaatacgtgaccatgaatcagattcaaacctgaagaacatt 791 Query: 738 gagctcgaaggcagttttgaccagataaagcaggccaacgacatggtgcgcgatctcatt 797 ||||||||||||| ||| ||||||||||||||||| | | |||||||| | || |||||| Sbjct: 792 gagctcgaaggcaatttcgaccagataaagcaggcaagcaacatggtgggtgagctcatt 851 Query: 798 g 798 | Sbjct: 852 g 852 Score = 270 bits (136), Expect = 1e-68 Identities = 235/268 (87%) Strand = Plus / Plus Query: 98 cgccgcccgcaagagatcccggccggagtccgccaacggaggcgccgcaggcgggaagcg 157 ||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||| Sbjct: 137 cgccgcccgcaagagatcccggccggacacggccaacggaggcgccgccggagggaagcg 196 Query: 158 ctcgagagaatcggagtcacaacaaactggtctatcaagcaaatcgaagccttgcaccaa 217 |||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct: 197 ctcgagagaaacggagtcatttcaaactggtctatcaagcaaattgaagccttgcaccaa 256 Query: 218 gtttttcagcactattgggtgcccctttggtgagggctgtcacttcgcgcactttgtccc 277 ||||||||||||||| || ||||| ||||| ||||| ||||| ||| ||||||||||||| Sbjct: 257 gtttttcagcactatcggatgcccttttggcgagggttgtcatttctcgcactttgtccc 316 Query: 278 tggtgggtaccaggcagtatcaaaatcacacaacctaggccatgctgctgtgtctgcacc 337 ||||||||| || |||||| ||||| ||| ||| |||||| | | |||||| ||||||| Sbjct: 317 tggtgggtatcaagcagtagcaaaaacactcaatctaggcaacccagctgtgcctgcacc 376 Query: 338 gtcaagaactcctgcagatcatgctgct 365 | ||||| ||||| |||||||||||| Sbjct: 377 ggcaagagctcctatggatcatgctgct 404 Score = 117 bits (59), Expect = 9e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 885 ggcaggagcaactacaagaccaagatatgcgagaacttcctcaagggtacctgcacgttt 944 |||||||||||||||||||||||| | |||||||||||| | ||||| ||||||||||| Sbjct: 936 ggcaggagcaactacaagaccaagctgtgcgagaacttcgtgaagggaacctgcacgttc 995 Query: 945 ggcgagcgctgccactttgcccatggcgagaccgaacagcggaaggg 991 ||||| || |||||||| || |||||||||| ||| ||||||||||| Sbjct: 996 ggcgaccgatgccacttcgctcatggcgagaacgagcagcggaaggg 1042
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 313 bits (158), Expect = 8e-82 Identities = 355/421 (84%), Gaps = 6/421 (1%) Strand = Plus / Plus Query: 378 acacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccat 437 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 34019114 acacgcatgtgcaccaagtataacactgcagaaggctgcaaatttggtgacaagtgccat 34019173 Query: 438 ttcgcccatggtgagagggagcttggcaggccaccatcctcctacatgtcccaggaaagt 497 |||||||||||||||||||| ||||||| |||| | | |||||||||| || ||| Sbjct: 34019174 ttcgcccatggtgagagggaacttggcaagccagctt------acatgtcccatgagagt 34019227 Query: 498 tcctacgcacctcctacgggtggtcgatatggaggtcgacacgaaccacctcctccagct 557 || || ||||||| |||||||||||||||||| |||| ||||||||||| ||||| Sbjct: 34019228 gccatggctcctcctatgggtggtcgatatggaggccgacctgaaccacctccaccagcc 34019287 Query: 558 tcgatgggccctccagccggaaactttggcgcctcgtctacctgcaaggtcagtgtcgat 617 | ||||| |||||||| ||||||||||| || || |||| |||| |||| || ||| Sbjct: 34019288 gctatgggtcctccagcaggaaactttggtgcatctgctactgccaagatcagcgttgat 34019347 Query: 618 gccgctctcgccggaggcataatcgggaagggtggggtcaacacgaagcagatctgccgt 677 ||| | || || || |||||||| ||||||||||| ||||||||||||||||| ||||| Sbjct: 34019348 gcctcgcttgctggtggcataattgggaagggtggagtcaacacgaagcagatatgccga 34019407 Query: 678 gtcacgggggtcaagctctcgatacgcgaccacgaatcaaacccagacttgaagaacatt 737 || || |||||||||||||| ||||| ||||| |||||| | || || ||||||||||| Sbjct: 34019408 gtaactggggtcaagctctcaatacgtgaccatgaatcagattcaaacctgaagaacatt 34019467 Query: 738 gagctcgaaggcagttttgaccagataaagcaggccaacgacatggtgcgcgatctcatt 797 ||||||||||||| ||| ||||||||||||||||| | | |||||||| | || |||||| Sbjct: 34019468 gagctcgaaggcaatttcgaccagataaagcaggcaagcaacatggtgggtgagctcatt 34019527 Query: 798 g 798 | Sbjct: 34019528 g 34019528 Score = 117 bits (59), Expect = 9e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 885 ggcaggagcaactacaagaccaagatatgcgagaacttcctcaagggtacctgcacgttt 944 |||||||||||||||||||||||| | |||||||||||| | ||||| ||||||||||| Sbjct: 34019612 ggcaggagcaactacaagaccaagctgtgcgagaacttcgtgaagggaacctgcacgttc 34019671 Query: 945 ggcgagcgctgccactttgcccatggcgagaccgaacagcggaaggg 991 ||||| || |||||||| || |||||||||| ||| ||||||||||| Sbjct: 34019672 ggcgaccgatgccacttcgctcatggcgagaacgagcagcggaaggg 34019718 Score = 99.6 bits (50), Expect = 2e-17 Identities = 119/142 (83%) Strand = Plus / Plus Query: 224 cagcactattgggtgcccctttggtgagggctgtcacttcgcgcactttgtccctggtgg 283 ||||||||| || ||||| ||||| ||||| ||||| ||| ||||||||||||||||||| Sbjct: 34018939 cagcactatcggatgcccttttggcgagggttgtcatttctcgcactttgtccctggtgg 34018998 Query: 284 gtaccaggcagtatcaaaatcacacaacctaggccatgctgctgtgtctgcaccgtcaag 343 ||| || |||||| ||||| ||| ||| |||||| | | |||||| |||||||| |||| Sbjct: 34018999 gtatcaagcagtagcaaaaacactcaatctaggcaacccagctgtgcctgcaccggcaag 34019058 Query: 344 aactcctgcagatcatgctgct 365 | ||||| |||||||||||| Sbjct: 34019059 agctcctatggatcatgctgct 34019080 Score = 95.6 bits (48), Expect = 3e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 98 cgccgcccgcaagagatcccggccggagtccgccaacggaggcgccgcaggcgggaagcg 157 ||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||| Sbjct: 34016916 cgccgcccgcaagagatcccggccggacacggccaacggaggcgccgccggagggaagcg 34016975 Query: 158 ctcgagag 165 |||||||| Sbjct: 34016976 ctcgagag 34016983 Score = 85.7 bits (43), Expect = 3e-13 Identities = 46/47 (97%) Strand = Plus / Plus Query: 180 caaactggtctatcaagcaaatcgaagccttgcaccaagtttttcag 226 |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 34017953 caaactggtctatcaagcaaattgaagccttgcaccaagtttttcag 34017999
>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence Length = 146168 Score = 313 bits (158), Expect = 8e-82 Identities = 355/421 (84%), Gaps = 6/421 (1%) Strand = Plus / Plus Query: 378 acacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccat 437 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 70010 acacgcatgtgcaccaagtataacactgcagaaggctgcaaatttggtgacaagtgccat 70069 Query: 438 ttcgcccatggtgagagggagcttggcaggccaccatcctcctacatgtcccaggaaagt 497 |||||||||||||||||||| ||||||| |||| | | |||||||||| || ||| Sbjct: 70070 ttcgcccatggtgagagggaacttggcaagccagctt------acatgtcccatgagagt 70123 Query: 498 tcctacgcacctcctacgggtggtcgatatggaggtcgacacgaaccacctcctccagct 557 || || ||||||| |||||||||||||||||| |||| ||||||||||| ||||| Sbjct: 70124 gccatggctcctcctatgggtggtcgatatggaggccgacctgaaccacctccaccagcc 70183 Query: 558 tcgatgggccctccagccggaaactttggcgcctcgtctacctgcaaggtcagtgtcgat 617 | ||||| |||||||| ||||||||||| || || |||| |||| |||| || ||| Sbjct: 70184 gctatgggtcctccagcaggaaactttggtgcatctgctactgccaagatcagcgttgat 70243 Query: 618 gccgctctcgccggaggcataatcgggaagggtggggtcaacacgaagcagatctgccgt 677 ||| | || || || |||||||| ||||||||||| ||||||||||||||||| ||||| Sbjct: 70244 gcctcgcttgctggtggcataattgggaagggtggagtcaacacgaagcagatatgccga 70303 Query: 678 gtcacgggggtcaagctctcgatacgcgaccacgaatcaaacccagacttgaagaacatt 737 || || |||||||||||||| ||||| ||||| |||||| | || || ||||||||||| Sbjct: 70304 gtaactggggtcaagctctcaatacgtgaccatgaatcagattcaaacctgaagaacatt 70363 Query: 738 gagctcgaaggcagttttgaccagataaagcaggccaacgacatggtgcgcgatctcatt 797 ||||||||||||| ||| ||||||||||||||||| | | |||||||| | || |||||| Sbjct: 70364 gagctcgaaggcaatttcgaccagataaagcaggcaagcaacatggtgggtgagctcatt 70423 Query: 798 g 798 | Sbjct: 70424 g 70424 Score = 117 bits (59), Expect = 9e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 885 ggcaggagcaactacaagaccaagatatgcgagaacttcctcaagggtacctgcacgttt 944 |||||||||||||||||||||||| | |||||||||||| | ||||| ||||||||||| Sbjct: 70508 ggcaggagcaactacaagaccaagctgtgcgagaacttcgtgaagggaacctgcacgttc 70567 Query: 945 ggcgagcgctgccactttgcccatggcgagaccgaacagcggaaggg 991 ||||| || |||||||| || |||||||||| ||| ||||||||||| Sbjct: 70568 ggcgaccgatgccacttcgctcatggcgagaacgagcagcggaaggg 70614 Score = 99.6 bits (50), Expect = 2e-17 Identities = 119/142 (83%) Strand = Plus / Plus Query: 224 cagcactattgggtgcccctttggtgagggctgtcacttcgcgcactttgtccctggtgg 283 ||||||||| || ||||| ||||| ||||| ||||| ||| ||||||||||||||||||| Sbjct: 69835 cagcactatcggatgcccttttggcgagggttgtcatttctcgcactttgtccctggtgg 69894 Query: 284 gtaccaggcagtatcaaaatcacacaacctaggccatgctgctgtgtctgcaccgtcaag 343 ||| || |||||| ||||| ||| ||| |||||| | | |||||| |||||||| |||| Sbjct: 69895 gtatcaagcagtagcaaaaacactcaatctaggcaacccagctgtgcctgcaccggcaag 69954 Query: 344 aactcctgcagatcatgctgct 365 | ||||| |||||||||||| Sbjct: 69955 agctcctatggatcatgctgct 69976 Score = 95.6 bits (48), Expect = 3e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 98 cgccgcccgcaagagatcccggccggagtccgccaacggaggcgccgcaggcgggaagcg 157 ||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||| Sbjct: 67812 cgccgcccgcaagagatcccggccggacacggccaacggaggcgccgccggagggaagcg 67871 Query: 158 ctcgagag 165 |||||||| Sbjct: 67872 ctcgagag 67879 Score = 85.7 bits (43), Expect = 3e-13 Identities = 46/47 (97%) Strand = Plus / Plus Query: 180 caaactggtctatcaagcaaatcgaagccttgcaccaagtttttcag 226 |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 68849 caaactggtctatcaagcaaattgaagccttgcaccaagtttttcag 68895
>dbj|AK121951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107K04, full insert sequence Length = 1349 Score = 305 bits (154), Expect = 2e-79 Identities = 354/421 (84%), Gaps = 6/421 (1%) Strand = Plus / Plus Query: 378 acacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccat 437 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 438 acacgcatgtgcaccaagtataacactgcagaaggctgcaaatttggtgacaagtgccat 497 Query: 438 ttcgcccatggtgagagggagcttggcaggccaccatcctcctacatgtcccaggaaagt 497 |||||||||||||||||||| ||||||| |||| | | |||||||||| || ||| Sbjct: 498 ttcgcccatggtgagagggaacttggcaagccagctt------acatgtcccatgagagt 551 Query: 498 tcctacgcacctcctacgggtggtcgatatggaggtcgacacgaaccacctcctccagct 557 || || ||||||| |||||||||||||||||| |||| ||||||||||| ||||| Sbjct: 552 gccatggctcctcctatgggtggtcgatatggaggccgacctgaaccacctccaccagcc 611 Query: 558 tcgatgggccctccagccggaaactttggcgcctcgtctacctgcaaggtcagtgtcgat 617 | ||||| |||||||| ||||||||||| || || |||| |||| |||| || ||| Sbjct: 612 gctatgggtcctccagcaggaaactttggtgcatctgctactgccaagatcagcgttgat 671 Query: 618 gccgctctcgccggaggcataatcgggaagggtggggtcaacacgaagcagatctgccgt 677 ||| | || || || |||||||| ||||||||||| ||||||||||||||||| ||||| Sbjct: 672 gcctcgcttgctggtggcataattgggaagggtggagtcaacacgaagcagatatgccga 731 Query: 678 gtcacgggggtcaagctctcgatacgcgaccacgaatcaaacccagacttgaagaacatt 737 || || |||||||||||||| ||||| ||||| ||||| | || || ||||||||||| Sbjct: 732 gtaactggggtcaagctctcaatacgtgaccatgaatcggattcaaacctgaagaacatt 791 Query: 738 gagctcgaaggcagttttgaccagataaagcaggccaacgacatggtgcgcgatctcatt 797 ||||||||||||| ||| ||||||||||||||||| | | |||||||| | || |||||| Sbjct: 792 gagctcgaaggcaatttcgaccagataaagcaggcaagcaacatggtgggtgagctcatt 851 Query: 798 g 798 | Sbjct: 852 g 852 Score = 270 bits (136), Expect = 1e-68 Identities = 235/268 (87%) Strand = Plus / Plus Query: 98 cgccgcccgcaagagatcccggccggagtccgccaacggaggcgccgcaggcgggaagcg 157 ||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||| Sbjct: 137 cgccgcccgcaagagatcccggccggacacggccaacggaggcgccgccggagggaagcg 196 Query: 158 ctcgagagaatcggagtcacaacaaactggtctatcaagcaaatcgaagccttgcaccaa 217 |||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct: 197 ctcgagagaaacggagtcatttcaaactggtctatcaagcaaattgaagccttgcaccaa 256 Query: 218 gtttttcagcactattgggtgcccctttggtgagggctgtcacttcgcgcactttgtccc 277 ||||||||||||||| || ||||| ||||| ||||| ||||| ||| ||||||||||||| Sbjct: 257 gtttttcagcactatcggatgcccttttggcgagggttgtcatttctcgcactttgtccc 316 Query: 278 tggtgggtaccaggcagtatcaaaatcacacaacctaggccatgctgctgtgtctgcacc 337 ||||||||| || |||||| ||||| ||| ||| |||||| | | |||||| ||||||| Sbjct: 317 tggtgggtatcaagcagtagcaaaaacactcaatctaggcaacccagctgtgcctgcacc 376 Query: 338 gtcaagaactcctgcagatcatgctgct 365 | ||||| ||||| |||||||||||| Sbjct: 377 ggcaagagctcctatggatcatgctgct 404 Score = 117 bits (59), Expect = 9e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 885 ggcaggagcaactacaagaccaagatatgcgagaacttcctcaagggtacctgcacgttt 944 |||||||||||||||||||||||| | |||||||||||| | ||||| ||||||||||| Sbjct: 936 ggcaggagcaactacaagaccaagctgtgcgagaacttcgtgaagggaacctgcacgttc 995 Query: 945 ggcgagcgctgccactttgcccatggcgagaccgaacagcggaaggg 991 ||||| || |||||||| || |||||||||| ||| ||||||||||| Sbjct: 996 ggcgaccgatgccacttcgctcatggcgagaacgagcagcggaaggg 1042
>gb|AY103670.1| Zea mays PCO086234 mRNA sequence Length = 1256 Score = 163 bits (82), Expect = 2e-36 Identities = 166/194 (85%) Strand = Plus / Plus Query: 102 gcccgcaagagatcccggccggagtccgccaacggaggcgccgcaggcgggaagcgctcg 161 ||||| ||||| |||||||||||| | || ||||| | ||||| | |||||||||||| Sbjct: 98 gcccggaagaggtcccggccggagacggcgaacggggctgccgccgccgggaagcgctcc 157 Query: 162 agagaatcggagtcacaacaaactggtctatcaagcaaatcgaagccttgcaccaagttt 221 | ||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 158 aaagacacggagtcatttcaaactggtctatcaagcaaatcgaagccttgcaccaagttt 217 Query: 222 ttcagcactattgggtgcccctttggtgagggctgtcacttcgcgcactttgtccctggt 281 ||||| || ||||||||||| ||||| ||||| ||||| || |||||||||||||||| Sbjct: 218 ttcagtacgattgggtgcccgtttggcgagggatgtcattttctgcactttgtccctggt 277 Query: 282 gggtaccaggcagt 295 || |||| |||||| Sbjct: 278 ggttacccggcagt 291 Score = 161 bits (81), Expect = 7e-36 Identities = 222/269 (82%) Strand = Plus / Plus Query: 552 ccagcttcgatgggccctccagccggaaactttggcgcctcgtctacctgcaaggtcagt 611 |||||| | |||||||||||||| ||||||||||| |||||| | || |||| ||||| Sbjct: 554 ccagctgccatgggccctccagcaggaaactttggtgcctcggcgactgccaagatcagt 613 Query: 612 gtcgatgccgctctcgccggaggcataatcgggaagggtggggtcaacacgaagcagatc 671 || || ||| |||| ||||| ||||||||||| ||||||||||||||||| |||||||| Sbjct: 614 gtggacgcctctctggccggtggcataatcggcaagggtggggtcaacactaagcagata 673 Query: 672 tgccgtgtcacgggggtcaagctctcgatacgcgaccacgaatcaaacccagacttgaag 731 | | | || || ||||||||||| || ||||||||||| || ||||| || | ||| Sbjct: 674 agtagaattacaggcgtcaagctctccatccgcgaccacgagtctaaccccaacctaaag 733 Query: 732 aacattgagctcgaaggcagttttgaccagataaagcaggccaacgacatggtgcgcgat 791 ||||| ||||| ||||||| |||||||||||| ||||| |||| |||| ||||||| ||| Sbjct: 734 aacatcgagctggaaggcaattttgaccagatcaagcaagccagcgacttggtgcgtgat 793 Query: 792 ctcattggcagcatcagcgccagcatgcc 820 ||||| | | ||||||||| |||||||| Sbjct: 794 ctcatcgcaaccatcagcgcaagcatgcc 822 Score = 109 bits (55), Expect = 2e-20 Identities = 67/71 (94%) Strand = Plus / Plus Query: 372 gtcaaaacacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaag 431 ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| Sbjct: 392 gtcaagacacgcatgtgcaccaagtacaacactacagaaggctgcaagttcggtgataag 451 Query: 432 tgccatttcgc 442 ||||||||||| Sbjct: 452 tgccatttcgc 462 Score = 81.8 bits (41), Expect = 5e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 891 agcaactacaagaccaagatatgcgagaacttcctcaagggtacctgcacgtttggcgag 950 |||||||||||||| ||| | |||||||||||| | |||||| |||| || ||||| || Sbjct: 893 agcaactacaagacgaagctgtgcgagaacttcttgaagggtgcctgtacttttggtgac 952 Query: 951 cgctgccactttgcccatggcgagaccgaacagcgga 987 || |||||||| |||||||||||||| || ||||||| Sbjct: 953 cggtgccacttcgcccatggcgagacggagcagcgga 989 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 506 acctcctacgggtggtcgatatgga 530 |||||||| |||||||||||||||| Sbjct: 511 acctcctatgggtggtcgatatgga 535
>gb|AY112248.1| Zea mays CL633_5 mRNA sequence Length = 1172 Score = 139 bits (70), Expect = 3e-29 Identities = 181/218 (83%) Strand = Plus / Plus Query: 552 ccagcttcgatgggccctccagccggaaactttggcgcctcgtctacctgcaaggtcagt 611 |||||| | |||||||||||||| ||||||||||| |||||| | || |||| ||||| Sbjct: 525 ccagctgccatgggccctccagcaggaaactttggtgcctcggcgactgccaagatcagt 584 Query: 612 gtcgatgccgctctcgccggaggcataatcgggaagggtggggtcaacacgaagcagatc 671 || ||||| |||| ||||| |||||||| || ||||| ||||||||||| |||||||| Sbjct: 585 gtggatgcgtctcttgccggtggcataattggtaagggcggggtcaacactaagcagata 644 Query: 672 tgccgtgtcacgggggtcaagctctcgatacgcgaccacgaatcaaacccagacttgaag 731 || | ||||| | ||||||||||| || ||||||||||| || | ||| || ||||| Sbjct: 645 agcagagtcaccgaggtcaagctctgtatccgcgaccacgagtctagccccaacctgaag 704 Query: 732 aacattgagctcgaaggcagttttgaccagataaagca 769 ||||||||||| ||||||| |||||||||||| ||||| Sbjct: 705 aacattgagctggaaggcaattttgaccagatcaagca 742 Score = 101 bits (51), Expect = 6e-18 Identities = 90/103 (87%) Strand = Plus / Plus Query: 885 ggcaggagcaactacaagaccaagatatgcgagaacttcctcaagggtacctgcacgttt 944 |||| ||||||||||||||| ||| |||||||||||||| | |||||| | || || || Sbjct: 852 ggcaagagcaactacaagacgaagctatgcgagaacttcgtgaagggtgcttgtactttc 911 Query: 945 ggcgagcgctgccactttgcccatggcgagaccgaacagcgga 987 |||||||| |||||||||||||||||||||| ||| ||||||| Sbjct: 912 ggcgagcggtgccactttgcccatggcgagaacgagcagcgga 954 Score = 93.7 bits (47), Expect = 1e-15 Identities = 111/134 (82%) Strand = Plus / Plus Query: 147 ggcgggaagcgctcgagagaatcggagtcacaacaaactggtctatcaagcaaatcgaag 206 |||||||||||||| | ||| ||||||| ||||||||||||||||||||||||||| Sbjct: 111 ggcgggaagcgctccaaagacatggagtcatttcaaactggtctatcaagcaaatcgaag 170 Query: 207 ccttgcaccaagtttttcagcactattgggtgcccctttggtgagggctgtcacttcgcg 266 ||||||| |||| ||| || ||||||||||| ||||||||||| |||| || | Sbjct: 171 ccttgcaacaagnnnnncagtacgattgggtgcccgtttggtgagggatgtcgttttctg 230 Query: 267 cactttgtccctgg 280 |||||||||||||| Sbjct: 231 cactttgtccctgg 244 Score = 77.8 bits (39), Expect = 8e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 378 acacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgcca 436 ||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||||| Sbjct: 366 acacgcatgtgcaccaagtacaatactacagaaggctgcagatttggtgataagtgcca 424
>dbj|AK242341.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J075199P17, full insert sequence Length = 2215 Score = 89.7 bits (45), Expect = 2e-14 Identities = 99/117 (84%) Strand = Plus / Plus Query: 147 ggcgggaagcgctcgagagaatcggagtcacaacaaactggtctatcaagcaaatcgaag 206 |||||||||||| || |||||||||||||| ||||| ||| || ||||||||||||| Sbjct: 1229 ggcgggaagcgcgcgcgagaatcggagtcatttcaaaccggtgtaggaagcaaatcgaag 1288 Query: 207 ccttgcaccaagtttttcagcactattgggtgcccctttggtgagggctgtcacttc 263 || |||||||| |||||||| || ||| ||||||||||||||||| || |||||| Sbjct: 1289 ccatgcaccaaatttttcagtacctctggttgcccctttggtgagggttgccacttc 1345 Score = 60.0 bits (30), Expect = 2e-05 Identities = 129/162 (79%) Strand = Plus / Plus Query: 602 caaggtcagtgtcgatgccgctctcgccggaggcataatcgggaagggtggggtcaacac 661 |||| ||||||| ||||| |||| || || ||||||||||||| ||||||||| ||||| Sbjct: 1696 caagatcagtgttgatgcatctcttgcaggtggcataatcgggaggggtggggttaacac 1755 Query: 662 gaagcagatctgccgtgtcacgggggtcaagctctcgatacgcgaccacgaatcaaaccc 721 |||||||| | | | ||||| |||| |||||| | || || || || |||||| || | Sbjct: 1756 aaagcagatatccagagtcacaggggccaagctggccatccgtgatcatgaatcagacac 1815 Query: 722 agacttgaagaacattgagctcgaaggcagttttgaccagat 763 ||||||| ||||||||||| || |||| ||||| ||||| Sbjct: 1816 caacttgaaaaacattgagcttgagggcacatttgatcagat 1857 Score = 50.1 bits (25), Expect = 0.018 Identities = 67/81 (82%) Strand = Plus / Plus Query: 385 tgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccatttcgccc 444 |||||| |||||| ||||||||||| || ||||| | || || |||||||| || || | Sbjct: 1488 tgtgcaacaagtataacactgcagagggatgcaaatggggggataagtgccactttgcgc 1547 Query: 445 atggtgagagggagcttggca 465 | |||||||||||||| |||| Sbjct: 1548 acggtgagagggagctcggca 1568 Score = 48.1 bits (24), Expect = 0.071 Identities = 66/80 (82%) Strand = Plus / Plus Query: 891 agcaactacaagaccaagatatgcgagaacttcctcaagggtacctgcacgtttggcgag 950 ||||||| |||||||||| | |||||||||||| ||| || | ||||| |||||||| Sbjct: 1967 agcaacttcaagaccaagctgtgcgagaacttcaccaaagggtcgtgcacttttggcgac 2026 Query: 951 cgctgccactttgcccatgg 970 | ||||| ||||||||||| Sbjct: 2027 aggtgccattttgcccatgg 2046
>ref|NM_001052711.1| Oryza sativa (japonica cultivar-group) Os02g0194200 (Os02g0194200) mRNA, complete cds Length = 903 Score = 89.7 bits (45), Expect = 2e-14 Identities = 99/117 (84%) Strand = Plus / Plus Query: 147 ggcgggaagcgctcgagagaatcggagtcacaacaaactggtctatcaagcaaatcgaag 206 |||||||||||| || |||||||||||||| ||||| ||| || ||||||||||||| Sbjct: 52 ggcgggaagcgcgcgcgagaatcggagtcatttcaaaccggtgtaggaagcaaatcgaag 111 Query: 207 ccttgcaccaagtttttcagcactattgggtgcccctttggtgagggctgtcacttc 263 || |||||||| |||||||| || ||| ||||||||||||||||| || |||||| Sbjct: 112 ccatgcaccaaatttttcagtacctctggttgcccctttggtgagggttgccacttc 168 Score = 60.0 bits (30), Expect = 2e-05 Identities = 129/162 (79%) Strand = Plus / Plus Query: 602 caaggtcagtgtcgatgccgctctcgccggaggcataatcgggaagggtggggtcaacac 661 |||| ||||||| ||||| |||| || || ||||||||||||| ||||||||| ||||| Sbjct: 519 caagatcagtgttgatgcatctcttgcaggtggcataatcgggaggggtggggttaacac 578 Query: 662 gaagcagatctgccgtgtcacgggggtcaagctctcgatacgcgaccacgaatcaaaccc 721 |||||||| | | | ||||| |||| |||||| | || || || || |||||| || | Sbjct: 579 aaagcagatatccagagtcacaggggccaagctggccatccgtgatcatgaatcagacac 638 Query: 722 agacttgaagaacattgagctcgaaggcagttttgaccagat 763 ||||||| ||||||||||| || |||| ||||| ||||| Sbjct: 639 caacttgaaaaacattgagcttgagggcacatttgatcagat 680 Score = 50.1 bits (25), Expect = 0.018 Identities = 67/81 (82%) Strand = Plus / Plus Query: 385 tgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccatttcgccc 444 |||||| |||||| ||||||||||| || ||||| | || || |||||||| || || | Sbjct: 311 tgtgcaacaagtataacactgcagagggatgcaaatggggggataagtgccactttgcgc 370 Query: 445 atggtgagagggagcttggca 465 | |||||||||||||| |||| Sbjct: 371 acggtgagagggagctcggca 391 Score = 48.1 bits (24), Expect = 0.071 Identities = 66/80 (82%) Strand = Plus / Plus Query: 891 agcaactacaagaccaagatatgcgagaacttcctcaagggtacctgcacgtttggcgag 950 ||||||| |||||||||| | |||||||||||| ||| || | ||||| |||||||| Sbjct: 790 agcaacttcaagaccaagctgtgcgagaacttcaccaaagggtcgtgcacttttggcgac 849 Query: 951 cgctgccactttgcccatgg 970 | ||||| ||||||||||| Sbjct: 850 aggtgccattttgcccatgg 869
>emb|CT835387.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107J24, full insert sequence Length = 1250 Score = 81.8 bits (41), Expect = 5e-12 Identities = 98/117 (83%) Strand = Plus / Plus Query: 147 ggcgggaagcgctcgagagaatcggagtcacaacaaactggtctatcaagcaaatcgaag 206 |||||||||||| || ||||||||||| || ||||| ||| || ||||||||||||| Sbjct: 215 ggcgggaagcgcgcgcgagaatcggaggcatttcaaaccggtgtaggaagcaaatcgaag 274 Query: 207 ccttgcaccaagtttttcagcactattgggtgcccctttggtgagggctgtcacttc 263 || |||||||| |||||||| || ||| ||||||||||||||||| || |||||| Sbjct: 275 ccatgcaccaaatttttcagtacctctggttgcccctttggtgagggttgccacttc 331 Score = 58.0 bits (29), Expect = 7e-05 Identities = 59/69 (85%) Strand = Plus / Plus Query: 602 caaggtcagtgtcgatgccgctctcgccggaggcataatcgggaagggtggggtcaacac 661 |||| ||||||| ||||| |||| || || ||||||||||||| ||||||||| ||||| Sbjct: 682 caagatcagtgttgatgcatctcttgcaggtggcataatcgggaggggtggggttaacac 741 Query: 662 gaagcagat 670 |||||||| Sbjct: 742 aaagcagat 750 Score = 50.1 bits (25), Expect = 0.018 Identities = 67/81 (82%) Strand = Plus / Plus Query: 385 tgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccatttcgccc 444 |||||| |||||| ||||||||||| || ||||| | || || |||||||| || || | Sbjct: 474 tgtgcaacaagtataacactgcagagggatgcaaatggggggataagtgccactttgcgc 533 Query: 445 atggtgagagggagcttggca 465 | |||||||||||||| |||| Sbjct: 534 acggtgagagggagctcggca 554 Score = 48.1 bits (24), Expect = 0.071 Identities = 66/80 (82%) Strand = Plus / Plus Query: 891 agcaactacaagaccaagatatgcgagaacttcctcaagggtacctgcacgtttggcgag 950 ||||||| |||||||||| | |||||||||||| ||| || | ||||| |||||||| Sbjct: 953 agcaacttcaagaccaagctgtgcgagaacttcaccaaagggtcgtgcacttttggcgac 1012 Query: 951 cgctgccactttgcccatgg 970 | ||||| ||||||||||| Sbjct: 1013 aggtgccattttgcccatgg 1032
>dbj|AP006377.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT38A19, TM0221, complete sequence Length = 110900 Score = 81.8 bits (41), Expect = 5e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 375 aaaacacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgc 434 ||||| ||||| |||| ||||| |||||||| ||||||||||| ||||||||||| ||| Sbjct: 77925 aaaactcgcatatgcaacaagtttaacactgctgaaggctgcaaatttggtgacaaatgc 77984 Query: 435 catttcgcccatggtga 451 ||||| ||||||||||| Sbjct: 77985 cattttgcccatggtga 78001 Score = 50.1 bits (25), Expect = 0.018 Identities = 31/33 (93%) Strand = Plus / Plus Query: 194 aagcaaatcgaagccttgcaccaagtttttcag 226 ||||||||||||||| || |||||||||||||| Sbjct: 76206 aagcaaatcgaagccatgtaccaagtttttcag 76238
>ref|NM_001064618.1| Oryza sativa (japonica cultivar-group) Os06g0618100 (Os06g0618100) mRNA, complete cds Length = 3134 Score = 65.9 bits (33), Expect = 3e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 375 aaaacacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgc 434 ||||| |||||||| | ||||||||||||||||||||| || || | ||| |||||| Sbjct: 2233 aaaactcgcatgtgtaacaagtacaacactgcagaaggatgtaaatggggtagcaagtgt 2292 Query: 435 catttcgcccatggtgagagggagcttgg 463 ||||| || ||||| |||||||||||||| Sbjct: 2293 cattttgctcatggagagagggagcttgg 2321 Score = 48.1 bits (24), Expect = 0.071 Identities = 42/48 (87%) Strand = Plus / Plus Query: 413 ctgcaagtttggtgacaagtgccatttcgcccatggtgagagggagct 460 ||||| |||||| |||| ||| ||||||||||||||||| || ||||| Sbjct: 2751 ctgcacgtttggagacaggtgtcatttcgcccatggtgaaagtgagct 2798
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 65.9 bits (33), Expect = 3e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 375 aaaacacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgc 434 ||||| |||||||| | ||||||||||||||||||||| || || | ||| |||||| Sbjct: 24426076 aaaactcgcatgtgtaacaagtacaacactgcagaaggatgtaaatggggtagcaagtgt 24426017 Query: 435 catttcgcccatggtgagagggagcttgg 463 ||||| || ||||| |||||||||||||| Sbjct: 24426016 cattttgctcatggagagagggagcttgg 24425988 Score = 48.1 bits (24), Expect = 0.071 Identities = 42/48 (87%) Strand = Plus / Minus Query: 413 ctgcaagtttggtgacaagtgccatttcgcccatggtgagagggagct 460 ||||| |||||| |||| ||| ||||||||||||||||| || ||||| Sbjct: 24425558 ctgcacgtttggagacaggtgtcatttcgcccatggtgaaagtgagct 24425511 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 9 tcctccctccctccgccgcgcc 30 |||||||||||||||||||||| Sbjct: 20052587 tcctccctccctccgccgcgcc 20052608 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 82 ggctcgccatggatgccgccgcccgc 107 |||| ||||||||||||||||||||| Sbjct: 25239278 ggctggccatggatgccgccgcccgc 25239253
>dbj|AP003609.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0012B02 Length = 149807 Score = 65.9 bits (33), Expect = 3e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 375 aaaacacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgc 434 ||||| |||||||| | ||||||||||||||||||||| || || | ||| |||||| Sbjct: 37549 aaaactcgcatgtgtaacaagtacaacactgcagaaggatgtaaatggggtagcaagtgt 37490 Query: 435 catttcgcccatggtgagagggagcttgg 463 ||||| || ||||| |||||||||||||| Sbjct: 37489 cattttgctcatggagagagggagcttgg 37461 Score = 48.1 bits (24), Expect = 0.071 Identities = 42/48 (87%) Strand = Plus / Minus Query: 413 ctgcaagtttggtgacaagtgccatttcgcccatggtgagagggagct 460 ||||| |||||| |||| ||| ||||||||||||||||| || ||||| Sbjct: 37031 ctgcacgtttggagacaggtgtcatttcgcccatggtgaaagtgagct 36984
>dbj|AK103787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145I17, full insert sequence Length = 3135 Score = 65.9 bits (33), Expect = 3e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 375 aaaacacgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgc 434 ||||| |||||||| | ||||||||||||||||||||| || || | ||| |||||| Sbjct: 2234 aaaactcgcatgtgtaacaagtacaacactgcagaaggatgtaaatggggtagcaagtgt 2293 Query: 435 catttcgcccatggtgagagggagcttgg 463 ||||| || ||||| |||||||||||||| Sbjct: 2294 cattttgctcatggagagagggagcttgg 2322 Score = 48.1 bits (24), Expect = 0.071 Identities = 42/48 (87%) Strand = Plus / Plus Query: 413 ctgcaagtttggtgacaagtgccatttcgcccatggtgagagggagct 460 ||||| |||||| |||| ||| ||||||||||||||||| || ||||| Sbjct: 2752 ctgcacgtttggagacaggtgtcatttcgcccatggtgaaagtgagct 2799
>gb|AC166091.3| Glycine max clone gmw1-11j16, complete sequence Length = 69947 Score = 65.9 bits (33), Expect = 3e-07 Identities = 72/85 (84%) Strand = Plus / Plus Query: 381 cgcatgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccatttc 440 ||||| |||| ||||| || ||||| ||||| ||||| ||||||||||| |||||||| Sbjct: 1336 cgcatatgcaacaagtttaatactgctgaaggttgcaaatttggtgacaaatgccatttt 1395 Query: 441 gcccatggtgagagggagcttggca 465 || |||||||| |||||||||||| Sbjct: 1396 gctcatggtgaatgggagcttggca 1420
>emb|CT835384.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106E07, full insert sequence Length = 1150 Score = 60.0 bits (30), Expect = 2e-05 Identities = 129/162 (79%) Strand = Plus / Plus Query: 602 caaggtcagtgtcgatgccgctctcgccggaggcataatcgggaagggtggggtcaacac 661 |||| ||||||| ||||| |||| || || ||||||||||||| ||||||||| ||||| Sbjct: 622 caagatcagtgttgatgcatctcttgcaggtggcataatcgggaggggtggggttaacac 681 Query: 662 gaagcagatctgccgtgtcacgggggtcaagctctcgatacgcgaccacgaatcaaaccc 721 |||||||| | | | ||||| |||| |||||| | || || || || |||||| || | Sbjct: 682 aaagcagatatccagagtcacaggggccaagctggccatccgtgatcatgaatcagacac 741 Query: 722 agacttgaagaacattgagctcgaaggcagttttgaccagat 763 ||||||| ||||||||||| || |||| ||||| ||||| Sbjct: 742 caacttgaaaaacattgagcttgagggcacatttgatcagat 783 Score = 50.1 bits (25), Expect = 0.018 Identities = 67/81 (82%) Strand = Plus / Plus Query: 385 tgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccatttcgccc 444 |||||| |||||| ||||||||||| || ||||| | || || |||||||| || || | Sbjct: 414 tgtgcaacaagtataacactgcagagggatgcaaatggggggataagtgccactttgcgc 473 Query: 445 atggtgagagggagcttggca 465 | |||||||||||||| |||| Sbjct: 474 acggtgagagggagctcggca 494 Score = 48.1 bits (24), Expect = 0.071 Identities = 66/80 (82%) Strand = Plus / Plus Query: 891 agcaactacaagaccaagatatgcgagaacttcctcaagggtacctgcacgtttggcgag 950 ||||||| |||||||||| | |||||||||||| ||| || | ||||| |||||||| Sbjct: 893 agcaacttcaagaccaagctgtgcgagaacttcaccaaagggtcgtgcacttttggcgac 952 Query: 951 cgctgccactttgcccatgg 970 | ||||| ||||||||||| Sbjct: 953 aggtgccattttgcccatgg 972
>emb|CT835383.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106D07, full insert sequence Length = 1152 Score = 60.0 bits (30), Expect = 2e-05 Identities = 129/162 (79%) Strand = Plus / Plus Query: 602 caaggtcagtgtcgatgccgctctcgccggaggcataatcgggaagggtggggtcaacac 661 |||| ||||||| ||||| |||| || || ||||||||||||| ||||||||| ||||| Sbjct: 624 caagatcagtgttgatgcatctcttgcaggtggcataatcgggaggggtggggttaacac 683 Query: 662 gaagcagatctgccgtgtcacgggggtcaagctctcgatacgcgaccacgaatcaaaccc 721 |||||||| | | | ||||| |||| |||||| | || || || || |||||| || | Sbjct: 684 aaagcagatatccagagtcacaggggccaagctggccatccgtgatcatgaatcagacac 743 Query: 722 agacttgaagaacattgagctcgaaggcagttttgaccagat 763 ||||||| ||||||||||| || |||| ||||| ||||| Sbjct: 744 caacttgaaaaacattgagcttgagggcacatttgatcagat 785 Score = 50.1 bits (25), Expect = 0.018 Identities = 67/81 (82%) Strand = Plus / Plus Query: 385 tgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccatttcgccc 444 |||||| |||||| ||||||||||| || ||||| | || || |||||||| || || | Sbjct: 416 tgtgcaacaagtataacactgcagagggatgcaaatggggggataagtgccactttgcgc 475 Query: 445 atggtgagagggagcttggca 465 | |||||||||||||| |||| Sbjct: 476 acggtgagagggagctcggca 496 Score = 48.1 bits (24), Expect = 0.071 Identities = 66/80 (82%) Strand = Plus / Plus Query: 891 agcaactacaagaccaagatatgcgagaacttcctcaagggtacctgcacgtttggcgag 950 ||||||| |||||||||| | |||||||||||| ||| || | ||||| |||||||| Sbjct: 895 agcaacttcaagaccaagctgtgcgagaacttcaccaaagggtcgtgcacttttggcgac 954 Query: 951 cgctgccactttgcccatgg 970 | ||||| ||||||||||| Sbjct: 955 aggtgccattttgcccatgg 974
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 60.0 bits (30), Expect = 2e-05 Identities = 129/162 (79%) Strand = Plus / Plus Query: 602 caaggtcagtgtcgatgccgctctcgccggaggcataatcgggaagggtggggtcaacac 661 |||| ||||||| ||||| |||| || || ||||||||||||| ||||||||| ||||| Sbjct: 5253170 caagatcagtgttgatgcatctcttgcaggtggcataatcgggaggggtggggttaacac 5253229 Query: 662 gaagcagatctgccgtgtcacgggggtcaagctctcgatacgcgaccacgaatcaaaccc 721 |||||||| | | | ||||| |||| |||||| | || || || || |||||| || | Sbjct: 5253230 aaagcagatatccagagtcacaggggccaagctggccatccgtgatcatgaatcagacac 5253289 Query: 722 agacttgaagaacattgagctcgaaggcagttttgaccagat 763 ||||||| ||||||||||| || |||| ||||| ||||| Sbjct: 5253290 caacttgaaaaacattgagcttgagggcacatttgatcagat 5253331 Score = 54.0 bits (27), Expect = 0.001 Identities = 54/63 (85%) Strand = Plus / Plus Query: 164 agaatcggagtcacaacaaactggtctatcaagcaaatcgaagccttgcaccaagttttt 223 ||||||||||||| ||||| ||| || ||||||||||||||| |||||||| ||||| Sbjct: 5251856 agaatcggagtcatttcaaaccggtgtaggaagcaaatcgaagccatgcaccaaattttt 5251915 Query: 224 cag 226 ||| Sbjct: 5251916 cag 5251918 Score = 50.1 bits (25), Expect = 0.018 Identities = 67/81 (82%) Strand = Plus / Plus Query: 385 tgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccatttcgccc 444 |||||| |||||| ||||||||||| || ||||| | || || |||||||| || || | Sbjct: 5252962 tgtgcaacaagtataacactgcagagggatgcaaatggggggataagtgccactttgcgc 5253021 Query: 445 atggtgagagggagcttggca 465 | |||||||||||||| |||| Sbjct: 5253022 acggtgagagggagctcggca 5253042 Score = 48.1 bits (24), Expect = 0.071 Identities = 66/80 (82%) Strand = Plus / Plus Query: 891 agcaactacaagaccaagatatgcgagaacttcctcaagggtacctgcacgtttggcgag 950 ||||||| |||||||||| | |||||||||||| ||| || | ||||| |||||||| Sbjct: 5253441 agcaacttcaagaccaagctgtgcgagaacttcaccaaagggtcgtgcacttttggcgac 5253500 Query: 951 cgctgccactttgcccatgg 970 | ||||| ||||||||||| Sbjct: 5253501 aggtgccattttgcccatgg 5253520
>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0437H03 Length = 170173 Score = 60.0 bits (30), Expect = 2e-05 Identities = 129/162 (79%) Strand = Plus / Plus Query: 602 caaggtcagtgtcgatgccgctctcgccggaggcataatcgggaagggtggggtcaacac 661 |||| ||||||| ||||| |||| || || ||||||||||||| ||||||||| ||||| Sbjct: 146623 caagatcagtgttgatgcatctcttgcaggtggcataatcgggaggggtggggttaacac 146682 Query: 662 gaagcagatctgccgtgtcacgggggtcaagctctcgatacgcgaccacgaatcaaaccc 721 |||||||| | | | ||||| |||| |||||| | || || || || |||||| || | Sbjct: 146683 aaagcagatatccagagtcacaggggccaagctggccatccgtgatcatgaatcagacac 146742 Query: 722 agacttgaagaacattgagctcgaaggcagttttgaccagat 763 ||||||| ||||||||||| || |||| ||||| ||||| Sbjct: 146743 caacttgaaaaacattgagcttgagggcacatttgatcagat 146784 Score = 54.0 bits (27), Expect = 0.001 Identities = 54/63 (85%) Strand = Plus / Plus Query: 164 agaatcggagtcacaacaaactggtctatcaagcaaatcgaagccttgcaccaagttttt 223 ||||||||||||| ||||| ||| || ||||||||||||||| |||||||| ||||| Sbjct: 145309 agaatcggagtcatttcaaaccggtgtaggaagcaaatcgaagccatgcaccaaattttt 145368 Query: 224 cag 226 ||| Sbjct: 145369 cag 145371 Score = 50.1 bits (25), Expect = 0.018 Identities = 67/81 (82%) Strand = Plus / Plus Query: 385 tgtgcaccaagtacaacactgcagaaggctgcaagtttggtgacaagtgccatttcgccc 444 |||||| |||||| ||||||||||| || ||||| | || || |||||||| || || | Sbjct: 146415 tgtgcaacaagtataacactgcagagggatgcaaatggggggataagtgccactttgcgc 146474 Query: 445 atggtgagagggagcttggca 465 | |||||||||||||| |||| Sbjct: 146475 acggtgagagggagctcggca 146495 Score = 48.1 bits (24), Expect = 0.071 Identities = 66/80 (82%) Strand = Plus / Plus Query: 891 agcaactacaagaccaagatatgcgagaacttcctcaagggtacctgcacgtttggcgag 950 ||||||| |||||||||| | |||||||||||| ||| || | ||||| |||||||| Sbjct: 146894 agcaacttcaagaccaagctgtgcgagaacttcaccaaagggtcgtgcacttttggcgac 146953 Query: 951 cgctgccactttgcccatgg 970 | ||||| ||||||||||| Sbjct: 146954 aggtgccattttgcccatgg 146973
>emb|AJ297304.1|PPI297304 Pinus pinaster partial mRNA for protein with similarity to the EST C99174 Length = 243 Score = 56.0 bits (28), Expect = 3e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 420 tttggtgacaagtgccatttcgcccatggtgagagggagcttgg 463 ||||| |||||||||||||| ||||||||||| | ||||||||| Sbjct: 60 tttggggacaagtgccattttgcccatggtgaaaaggagcttgg 103
>gb|AY104443.1| Zea mays PCO095642 mRNA sequence Length = 1246 Score = 56.0 bits (28), Expect = 3e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 194 aagcaaatcgaagccttgcaccaagtttttcagcactattgggtgcccctttggtg 249 ||||||||| ||||| |||||||| |||||||||||| || ||||||||||||| Sbjct: 232 aagcaaatccaagccgtgcaccaaatttttcagcactgcgggttgcccctttggtg 287
>gb|BC100162.1| Xenopus laevis hypothetical protein MGC114600, mRNA (cDNA clone MGC:114600 IMAGE:4174475), complete cds Length = 2595 Score = 48.1 bits (24), Expect = 0.071 Identities = 33/36 (91%) Strand = Plus / Plus Query: 413 ctgcaagtttggtgacaagtgccatttcgcccatgg 448 |||||||| ||||||||||||||| || |||||||| Sbjct: 616 ctgcaagtatggtgacaagtgccagtttgcccatgg 651
>ref|XM_846161.1| PREDICTED: Canis familiaris similar to CTD small phosphatase-like protein (CTDSP-like) (Small C-terminal domain phosphatase 3) (Small CTD phosphatase 3) (SCP3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) (RBSP3) (YA22 protein) (... (LOC608986), mRNA Length = 1315 Score = 46.1 bits (23), Expect = 0.28 Identities = 32/35 (91%) Strand = Plus / Plus Query: 1025 atcctcagctccttcttgtgctgctactgtgacta 1059 ||||||||||||||||| ||||||| | ||||||| Sbjct: 280 atcctcagctccttcttctgctgcttccgtgacta 314
>ref|NM_001064342.1| Oryza sativa (japonica cultivar-group) Os06g0542200 (Os06g0542200) mRNA, complete cds Length = 1691 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 9 tcctccctccctccgccgcgcc 30 |||||||||||||||||||||| Sbjct: 61 tcctccctccctccgccgcgcc 82
>ref|XM_001131757.1| PREDICTED: Homo sapiens hypothetical protein LOC729916 (LOC729916), mRNA Length = 444 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 21 ccgccgcgccccaccccgcctccgcg 46 ||||||| |||||||||||||||||| Sbjct: 151 ccgccgctccccaccccgcctccgcg 126
>gb|CP000431.1| Rhodococcus sp. RHA1, complete genome Length = 7804765 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 610 gtgtcgatgccgctctcgccgg 631 |||||||||||||||||||||| Sbjct: 1272619 gtgtcgatgccgctctcgccgg 1272598
>emb|AL354740.29| Human DNA sequence from clone RP11-513I15 on chromosome 6 Contains the 5' end of the GRM4 gene for glutamate receptor metabotropic 4, keratin 18 pseudogene 1 (KRT18P1), a cytochrome c, somatic (CYCS) pseudogene, the HMGA1 gene for high mobility group AT-hook 1, a ribosomal protein L35 (RPL35) pseudogene, part of a novel gene and CpG islands, complete sequence Length = 151828 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 21 ccgccgcgccccaccccgcctccgcg 46 ||||||| |||||||||||||||||| Sbjct: 102978 ccgccgctccccaccccgcctccgcg 103003
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 802 gcatcagcgccagcatgccgtc 823 |||||||||||||||||||||| Sbjct: 7484931 gcatcagcgccagcatgccgtc 7484910
>dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1068H08 Length = 152794 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 9 tcctccctccctccgccgcgcc 30 |||||||||||||||||||||| Sbjct: 40861 tcctccctccctccgccgcgcc 40882
>dbj|AP004792.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0505A04 Length = 159241 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 82 ggctcgccatggatgccgccgcccgc 107 |||| ||||||||||||||||||||| Sbjct: 57886 ggctggccatggatgccgccgcccgc 57861
>dbj|AK058589.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-G05, full insert sequence Length = 1690 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 9 tcctccctccctccgccgcgcc 30 |||||||||||||||||||||| Sbjct: 61 tcctccctccctccgccgcgcc 82
>ref|NM_001071240.1| Oryza sativa (japonica cultivar-group) Os10g0444100 (Os10g0444100) mRNA, complete cds Length = 1275 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 cctccctccctccgccgcgcc 30 ||||||||||||||||||||| Sbjct: 24 cctccctccctccgccgcgcc 44
>dbj|AK227373.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-04-J23 Length = 1254 Score = 42.1 bits (21), Expect = 4.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 194 aagcaaatcgaagccttgcaccaagtttttcag 226 ||||||||||||||| ||||| || |||||||| Sbjct: 271 aagcaaatcgaagccatgcacaaaatttttcag 303
>gb|DQ465034.1| Mustela putorius furo smooth muscle SCP3-like protein mRNA, complete cds Length = 1114 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1025 atcctcagctccttcttgtgctgct 1049 ||||||||||||||||| ||||||| Sbjct: 160 atcctcagctccttcttctgctgct 184
>gb|BT025032.1| Arabidopsis thaliana At3g12130 mRNA, complete cds Length = 747 Score = 42.1 bits (21), Expect = 4.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 194 aagcaaatcgaagccttgcaccaagtttttcag 226 ||||||||||||||| ||||| || |||||||| Sbjct: 108 aagcaaatcgaagccatgcacaaaatttttcag 140
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 806 cagcgccagcatgccgtccaa 826 ||||||||||||||||||||| Sbjct: 428528 cagcgccagcatgccgtccaa 428548
>ref|NM_121135.1| Arabidopsis thaliana nucleic acid binding / transcription factor/ zinc ion binding (AT5G10970) mRNA, complete cds Length = 819 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1036 cttcttgtgctgctactgtgactat 1060 |||||||||||||||||||| |||| Sbjct: 136 cttcttgtgctgctactgtgtctat 112
>ref|NM_112048.2| Arabidopsis thaliana nucleic acid binding / transcription factor (AT3G12130) mRNA, complete cds Length = 1265 Score = 42.1 bits (21), Expect = 4.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 194 aagcaaatcgaagccttgcaccaagtttttcag 226 ||||||||||||||| ||||| || |||||||| Sbjct: 292 aagcaaatcgaagccatgcacaaaatttttcag 324
>ref|NM_120760.2| Arabidopsis thaliana nucleic acid binding / transcription factor (AT5G06770) mRNA, complete cds Length = 1120 Score = 42.1 bits (21), Expect = 4.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 194 aagcaaatcgaagccttgcaccaagtttttcagcact 230 ||||||||| ||||| ||||| || |||||||||||| Sbjct: 271 aagcaaatccaagccatgcactaaatttttcagcact 307
>ref|XM_867393.1| PREDICTED: Bos taurus similar to CTD small phosphatase-like protein (CTDSP-like) (Small C-terminal domain phosphatase 3) (Small CTD phosphatase 3) (SCP3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) (RBSP3) (YA22 protein) (..., transcript variant 2 (LOC538425), mRNA Length = 1114 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1025 atcctcagctccttcttgtgctgct 1049 ||||||||||||||||| ||||||| Sbjct: 140 atcctcagctccttcttctgctgct 164
>ref|XM_618630.2| PREDICTED: Bos taurus similar to CTD small phosphatase-like protein (CTDSP-like) (Small C-terminal domain phosphatase 3) (Small CTD phosphatase 3) (SCP3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) (RBSP3) (YA22 protein) (..., transcript variant 1 (LOC538425), mRNA Length = 1081 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1025 atcctcagctccttcttgtgctgct 1049 ||||||||||||||||| ||||||| Sbjct: 140 atcctcagctccttcttctgctgct 164
>ref|XM_880104.1| PREDICTED: Bos taurus similar to CTD small phosphatase-like protein (CTDSP-like) (Small C-terminal domain phosphatase 3) (Small CTD phosphatase 3) (SCP3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) (RBSP3) (YA22 protein) (..., transcript variant 4 (LOC538425), mRNA Length = 1147 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1025 atcctcagctccttcttgtgctgct 1049 ||||||||||||||||| ||||||| Sbjct: 140 atcctcagctccttcttctgctgct 164
>gb|BC040811.1| Mus musculus RNA binding motif protein 28, mRNA (cDNA clone MGC:49120 IMAGE:4015830), complete cds Length = 2563 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1015 gctgcggtggatcctcagctccttc 1039 |||||| |||||||||||||||||| Sbjct: 1816 gctgcgttggatcctcagctccttc 1792
>gb|BC023293.1| Mus musculus RNA binding motif protein 28, mRNA (cDNA clone IMAGE:3984003), partial cds Length = 1451 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1015 gctgcggtggatcctcagctccttc 1039 |||||| |||||||||||||||||| Sbjct: 620 gctgcgttggatcctcagctccttc 596
>gb|AC079277.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-65N7, complete sequence Length = 190328 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1015 gctgcggtggatcctcagctccttc 1039 |||||| |||||||||||||||||| Sbjct: 37494 gctgcgttggatcctcagctccttc 37518
>gb|AC090434.43| Chlamydomonas reinhardtii clone cr-1j6, complete sequence Length = 127686 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 860 aggcggtggtggcggagggcctggc 884 |||||||||||| |||||||||||| Sbjct: 64490 aggcggtggtggtggagggcctggc 64466
>gb|BC024602.1| Mus musculus, clone IMAGE:4017616, mRNA Length = 2496 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1015 gctgcggtggatcctcagctccttc 1039 |||||| |||||||||||||||||| Sbjct: 1752 gctgcgttggatcctcagctccttc 1728
>gb|DQ115788.1| Rhizobium etli putative outer membrane protein NodTpc (nodTpc) gene, complete cds Length = 3703 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 831 cctgccggcgcagcggcaccagcag 855 ||||||||||||||||| ||||||| Sbjct: 2847 cctgccggcgcagcggctccagcag 2823
>dbj|AK156773.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830048N20 product:hypothetical RNA-binding region RNP-1 (RNA recognition motif) containing protein, full insert sequence Length = 3517 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1015 gctgcggtggatcctcagctccttc 1039 |||||| |||||||||||||||||| Sbjct: 1808 gctgcgttggatcctcagctccttc 1784
>dbj|AK161670.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730478I16 product:hypothetical RNA-binding region RNP-1 (RNA recognition motif) containing protein, full insert sequence Length = 2708 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1015 gctgcggtggatcctcagctccttc 1039 |||||| |||||||||||||||||| Sbjct: 1838 gctgcgttggatcctcagctccttc 1814
>dbj|AK167050.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0028O10 product:hypothetical RNA-binding region RNP-1 (RNA recognition motif) containing protein, full insert sequence Length = 2603 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1015 gctgcggtggatcctcagctccttc 1039 |||||| |||||||||||||||||| Sbjct: 1873 gctgcgttggatcctcagctccttc 1849
>gb|AC073391.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0015F09b, complete sequence Length = 108964 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 cctccctccctccgccgcgcc 30 ||||||||||||||||||||| Sbjct: 66822 cctccctccctccgccgcgcc 66842
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 97 ccgccgcccgcaagagatcccggcc 121 |||||||||||||| |||||||||| Sbjct: 89118 ccgccgcccgcaagggatcccggcc 89094
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 cctccctccctccgccgcgcc 30 ||||||||||||||||||||| Sbjct: 15483476 cctccctccctccgccgcgcc 15483496
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 19 ctccgccgcgccccaccccgcctcc 43 |||||||||| |||||||||||||| Sbjct: 25844577 ctccgccgcgtcccaccccgcctcc 25844553
>gb|AY086759.1| Arabidopsis thaliana clone 27460 mRNA, complete sequence Length = 1123 Score = 42.1 bits (21), Expect = 4.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 194 aagcaaatcgaagccttgcaccaagtttttcagcact 230 ||||||||| ||||| ||||| || |||||||||||| Sbjct: 275 aagcaaatccaagccatgcactaaatttttcagcact 311
>gb|AY085746.1| Arabidopsis thaliana clone 17632 mRNA, complete sequence Length = 1265 Score = 42.1 bits (21), Expect = 4.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 194 aagcaaatcgaagccttgcaccaagtttttcag 226 ||||||||||||||| ||||| || |||||||| Sbjct: 292 aagcaaatcgaagccatgcacaaaatttttcag 324
>gb|AF286367.1|AF286367 Homo sapiens HMGIY gene, promoter Length = 3495 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 21 ccgccgcgccccaccccgcctccgc 45 ||||||| ||||||||||||||||| Sbjct: 2693 ccgccgctccccaccccgcctccgc 2717
>emb|AL391222.1|ATT5K6 Arabidopsis thaliana DNA chromosome 5, BAC clone T5K6 (ESSA project) Length = 96379 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1036 cttcttgtgctgctactgtgactat 1060 |||||||||||||||||||| |||| Sbjct: 20543 cttcttgtgctgctactgtgtctat 20519
>emb|AL365234.1|ATT30N20 Arabidopsis thaliana DNA chromosome 5, BAC clone T30N20 (ESSA project) Length = 98473 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1036 cttcttgtgctgctactgtgactat 1060 |||||||||||||||||||| |||| Sbjct: 77031 cttcttgtgctgctactgtgtctat 77007
>gb|AC153909.5| Mus musculus 6 BAC RP23-190O15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226538 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1015 gctgcggtggatcctcagctccttc 1039 |||||| |||||||||||||||||| Sbjct: 78511 gctgcgttggatcctcagctccttc 78487
>gb|AC069473.4|AC069473 Arabidopsis thaliana chromosome 3 BAC T21B14 genomic sequence, complete sequence Length = 85657 Score = 42.1 bits (21), Expect = 4.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 194 aagcaaatcgaagccttgcaccaagtttttcag 226 ||||||||||||||| ||||| || |||||||| Sbjct: 16513 aagcaaatcgaagccatgcacaaaatttttcag 16545
>gb|BT005260.1| Arabidopsis thaliana At5g06770 mRNA, complete cds Length = 723 Score = 42.1 bits (21), Expect = 4.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 194 aagcaaatcgaagccttgcaccaagtttttcagcact 230 ||||||||| ||||| ||||| || |||||||||||| Sbjct: 108 aagcaaatccaagccatgcactaaatttttcagcact 144
>dbj|AP002063.2| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T23B7 Length = 40167 Score = 42.1 bits (21), Expect = 4.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 194 aagcaaatcgaagccttgcaccaagtttttcag 226 ||||||||||||||| ||||| || |||||||| Sbjct: 19457 aagcaaatcgaagccatgcacaaaatttttcag 19425
>dbj|AK117974.1| Arabidopsis thaliana At5g06770 mRNA for unknown protein, complete cds, clone: RAFL19-18-C06 Length = 1117 Score = 42.1 bits (21), Expect = 4.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 194 aagcaaatcgaagccttgcaccaagtttttcagcact 230 ||||||||| ||||| ||||| || |||||||||||| Sbjct: 268 aagcaaatccaagccatgcactaaatttttcagcact 304
>ref|XM_952311.1| Neurospora crassa OR74A hypothetical protein (NCU07179.1) partial mRNA Length = 2412 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 904 ccaagatatgcgagaacttcctcaa 928 ||||||| ||||||||||||||||| Sbjct: 65 ccaagatgtgcgagaacttcctcaa 89
>dbj|AK071645.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105M22, full insert sequence Length = 1276 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 cctccctccctccgccgcgcc 30 ||||||||||||||||||||| Sbjct: 25 cctccctccctccgccgcgcc 45
>dbj|AP004009.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1339_F05 Length = 132708 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 19 ctccgccgcgccccaccccgcctcc 43 |||||||||| |||||||||||||| Sbjct: 15025 ctccgccgcgtcccaccccgcctcc 15001
>dbj|AP001922.4| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2530H12, complete sequence Length = 219366 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 ggcctcttcctccctccctcc 22 ||||||||||||||||||||| Sbjct: 147039 ggcctcttcctccctccctcc 147059
>ref|NM_026650.1| Mus musculus RNA binding motif protein 28 (Rbm28), transcript variant 1, mRNA gb|BC027123.1| Mus musculus RNA binding motif protein 28, mRNA (cDNA clone MGC:38664 IMAGE:5356457), complete cds Length = 1968 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1015 gctgcggtggatcctcagctccttc 1039 |||||| |||||||||||||||||| Sbjct: 1177 gctgcgttggatcctcagctccttc 1153
>ref|NM_133925.1| Mus musculus RNA binding motif protein 28 (Rbm28), transcript variant 2, mRNA gb|BC018373.1| Mus musculus RNA binding motif protein 28, mRNA (cDNA clone MGC:12075 IMAGE:3708613), complete cds Length = 2117 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1015 gctgcggtggatcctcagctccttc 1039 |||||| |||||||||||||||||| Sbjct: 1245 gctgcgttggatcctcagctccttc 1221
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 834 gccggcgcagcggcaccagca 854 ||||||||||||||||||||| Sbjct: 2506286 gccggcgcagcggcaccagca 2506266
>gb|AY103911.1| Zea mays PCO142108 mRNA sequence Length = 861 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 aagagatcccggccggagtcc 128 ||||||||||||||||||||| Sbjct: 370 aagagatcccggccggagtcc 390
>emb|AL132855.4|CNS01DTR Human chromosome 14 DNA sequence BAC C-2201G16 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 157910 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 ggcctcttcctccctccctcc 22 ||||||||||||||||||||| Sbjct: 127255 ggcctcttcctccctccctcc 127235
>emb|AL929571.10| Mouse DNA sequence from clone RP23-313G3 on chromosome 2, complete sequence Length = 88123 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1121 tgtgatttagattcagctttt 1141 ||||||||||||||||||||| Sbjct: 52439 tgtgatttagattcagctttt 52419 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 177,000,391 Number of extensions: 9686712 Number of successful extensions: 253869 Number of sequences better than 10.0: 77 Number of HSP's gapped: 253840 Number of HSP's successfully gapped: 135 Length of query: 1164 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1141 Effective length of database: 18,503,978,556 Effective search space: 21113039532396 Effective search space used: 21113039532396 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
