ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf87o08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q14190:SIM2_HUMAN Single-minded homolog 2 - Homo sapiens (Human) 34 0.82
2Q9JHX2:SP5_MOUSE Transcription factor Sp5 - Mus musculus (Mouse) 33 2.4
3Q6BEB4:SP5_HUMAN Transcription factor Sp5 - Homo sapiens (Human) 33 2.4
4Q5B7W0:GPI14_EMENI GPI mannosyltransferase 1 - Emericella nidula... 31 9.0
5Q61079:SIM2_MOUSE Single-minded homolog 2 - Mus musculus (Mouse) 31 9.1

>Q14190:SIM2_HUMAN Single-minded homolog 2 - Homo sapiens (Human)|
          Length = 667
 Score = 34.3 bits (77), Expect = 0.82
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = -1

Query: 832 CGLFHIIFIHQLGKGKRRKTARHFNLLGSNRCSYNWVEFSA----KS*GSPPHCATGLEY 665
           C +FH+ + H L   K + T +++ LL S R  + WV+  A     S  S PHC   + Y
Sbjct: 272 CDVFHLRYAHHLLLVKGQVTTKYYRLL-SKRGGWVWVQSYATVVHNSRSSRPHCIVSVNY 330



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>Q9JHX2:SP5_MOUSE Transcription factor Sp5 - Mus musculus (Mouse)|
          Length = 398

 Score = 32.7 bits (73), Expect = 2.4
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = +2

Query: 245 DLDPHEGQVLDVIQS*CRLAASSMGARCDGSPWFQRVYDITE-EPVLPGRHFCSFPSRES 421
           D   ++ Q+  ++Q+   LAA++   R    P  Q      E EP    +H C  P    
Sbjct: 246 DFAQYQSQIAALLQTKAPLAATARRCRRCRCPNCQAAGGAPEAEPGKKKQHVCHVPGCGK 305

Query: 422 HVGTTRHCQRIPKWISSSSPFAVDKI-CSDNYEHSEE 529
             G T H +   +W +   PF  + + C  ++  S+E
Sbjct: 306 VYGKTSHLKAHLRWHTGERPFVCNWLFCGKSFTRSDE 342



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>Q6BEB4:SP5_HUMAN Transcription factor Sp5 - Homo sapiens (Human)|
          Length = 398

 Score = 32.7 bits (73), Expect = 2.4
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = +2

Query: 245 DLDPHEGQVLDVIQS*CRLAASSMGARCDGSPWFQRVYDITE-EPVLPGRHFCSFPSRES 421
           D   ++ Q+  ++Q+   LAA++   R    P  Q      E EP    +H C  P    
Sbjct: 246 DFAQYQSQIAALLQTKAPLAATARRCRRCRCPNCQAAGGAPEAEPGKKKQHVCHVPGCGK 305

Query: 422 HVGTTRHCQRIPKWISSSSPFAVDKI-CSDNYEHSEE 529
             G T H +   +W +   PF  + + C  ++  S+E
Sbjct: 306 VYGKTSHLKAHLRWHTGERPFVCNWLFCGKSFTRSDE 342



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>Q5B7W0:GPI14_EMENI GPI mannosyltransferase 1 - Emericella nidulans (Aspergillus|
           nidulans)
          Length = 443

 Score = 30.8 bits (68), Expect = 9.0
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 360 TLLRNPFYLAVIFVVFLVGKAMWVQLDIANEFR--NGFLPALLSLSTKF 500
           +LLRNP     +  ++++G+A+W+Q     EF   + FLP L   S  F
Sbjct: 365 SLLRNPRLGIAVAALWILGQALWLQQGYLLEFLGISSFLPGLFLASLGF 413



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>Q61079:SIM2_MOUSE Single-minded homolog 2 - Mus musculus (Mouse)|
          Length = 657

 Score = 30.8 bits (68), Expect = 9.1
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -1

Query: 832 CGLFHIIFIHQLGKGKRRKTARHFNLLGSNRCSYNWVEFSA----KS*GSPPHCATGLEY 665
           C  FH+ + H L   K + T +++ LL S    + WV+  A     S  S PHC   + Y
Sbjct: 272 CDTFHLRYAHHLLLVKGQVTTKYYRLL-SKLGGWVWVQSYATVVHNSRSSRPHCIVSVNY 330


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 163,884,356
Number of extensions: 3433996
Number of successful extensions: 8272
Number of sequences better than 10.0: 5
Number of HSP's gapped: 8268
Number of HSP's successfully gapped: 5
Length of query: 334
Length of database: 100,686,439
Length adjustment: 114
Effective length of query: 220
Effective length of database: 69,416,809
Effective search space: 15271697980
Effective search space used: 15271697980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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