| Clone Name | FLbaf85e01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY956330.1| Triticum aestivum salt tolerant protein (SC) mRNA, complete cds Length = 579 Score = 745 bits (376), Expect = 0.0 Identities = 415/428 (96%) Strand = Plus / Plus Query: 99 gcggccatggagaacctggcgatgctgtgggcgatcatcgggccgggcgtcgccggcgcg 158 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 17 gcggccatggagaacctggcgatgctgtgggggatcatcgggccgggcgtcgccggcgcg 76 Query: 159 ctcttcggcgccggatggtggttctgggtcgacgccgtcgtctgcagcgccgtccaggtc 218 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77 ctcttcggcgccggctggtggttctgggtcgacgccgtcgtctgcagcgccgtccaggtc 136 Query: 219 tccttcatccactacctgcccgggatcttcgcgtcgctggccgcgctcatgttcaattgc 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 137 tccttcatccactacctgcccgggatcttcgcgtcgctggccgcgctcatgttcaattgc 196 Query: 279 gtcgacaaggatgccatcgggaacgactactactcgtcctatggggatgattccgagtgg 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 gtcgacaaggatgccatcgggaacgactactactcgtcctatggggatgattccgagtgg 256 Query: 339 agggtgaagctttggcttttcgtcgcctatgttgtctctttcgtctgcctagctggatca 398 ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| Sbjct: 257 agggtgaagctttggcttttcgtcgcctacgtcgtctctttcgtctgcctggctggatcg 316 Query: 399 gtgggtttgctggtgcaagatgccttgacagacaagggcccttctgtgtggactggtgtt 458 ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct: 317 gtgggtttgttggtgcaagacgccctgacagacaagggcccttctgtgtggactggtgtt 376 Query: 459 gctggcgttctgcaatgcgtttttgtgttgataagtgggttgacatactggacgtgccac 518 || |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 377 gccggcgttctgcaatgtgttttcgtgttgataagcgggttgacatactggacgtgccac 436 Query: 519 accgagga 526 |||||||| Sbjct: 437 accgagga 444 Score = 131 bits (66), Expect = 5e-27 Identities = 89/94 (94%), Gaps = 2/94 (2%) Strand = Plus / Plus Query: 601 cccgtgtgtggtcctgtgtaaaa-aatatgttcattccagggcgggattactgggtgtct 659 ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct: 487 cccgtgtgtggtcctgtgtaaaaaaatatgttcattccagggcgggattacttggtgtcc 546 Query: 660 gtgtgtgcatagctgactgcttccctgaaatgga 693 ||||||||||||||||| |||| ||||||||||| Sbjct: 547 gtgtgtgcatagctgaccgctt-cctgaaatgga 579
>emb|CT834125.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI004M03, full insert sequence Length = 745 Score = 523 bits (264), Expect = e-145 Identities = 387/428 (90%) Strand = Plus / Plus Query: 102 gccatggagaacctggcgatgctgtgggcgatcatcgggccgggcgtcgccggcgcgctc 161 ||||||||||| || ||| |||| |||| ||||||||||||||| |||||||| ||| || Sbjct: 129 gccatggagaatcttgcgctgctttgggggatcatcgggccgggagtcgccggtgcggtc 188 Query: 162 ttcggcgccggatggtggttctgggtcgacgccgtcgtctgcagcgccgtccaggtctcc 221 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 189 ttcggcgccgggtggtggttctgggtcgacgccgtcgtctgcagctccgtccaggtctcc 248 Query: 222 ttcatccactacctgcccgggatcttcgcgtcgctggccgcgctcatgttcaattgcgtc 281 ||| |||||||||| |||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 249 ttcctccactacctacccgggatattcgcgtcgctggccgcgctcatgttcaacgccgtg 308 Query: 282 gacaaggatgccatcgggaacgactactactcgtcctatggggatgattccgagtggagg 341 ||||||||| ||||| ||||||| |||||| |||| ||||| ||||||||||||||| Sbjct: 309 aacaaggatgagatcggatacgactattactcgccctacggggacgattccgagtggagg 368 Query: 342 gtgaagctttggcttttcgtcgcctatgttgtctctttcgtctgcctagctggatcagtg 401 ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||| Sbjct: 369 gtgaagctttggctttttgtggcgtatgttgtctctttcgtctgcctagctggatcagtg 428 Query: 402 ggtttgctggtgcaagatgccttgacagacaagggcccttctgtgtggactggtgttgct 461 ||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 429 ggtatgttggtgcaagatgccttgacagacaaaggcccttctgtgtggactggtgttgct 488 Query: 462 ggcgttctgcaatgcgtttttgtgttgataagtgggttgacatactggacgtgccacacc 521 || ||||||||||| ||| |||| |||||||||||||||| ||| |||||||| ||| | Sbjct: 489 ggtgttctgcaatgtgttcttgtattgataagtgggttgatatattggacgtgtcactct 548 Query: 522 gaggacta 529 |||||||| Sbjct: 549 gaggacta 556
>ref|NM_001069875.1| Oryza sativa (japonica cultivar-group) Os09g0453000 (Os09g0453000) mRNA, complete cds Length = 665 Score = 523 bits (264), Expect = e-145 Identities = 387/428 (90%) Strand = Plus / Plus Query: 102 gccatggagaacctggcgatgctgtgggcgatcatcgggccgggcgtcgccggcgcgctc 161 ||||||||||| || ||| |||| |||| ||||||||||||||| |||||||| ||| || Sbjct: 45 gccatggagaatcttgcgctgctttgggggatcatcgggccgggagtcgccggtgcggtc 104 Query: 162 ttcggcgccggatggtggttctgggtcgacgccgtcgtctgcagcgccgtccaggtctcc 221 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 105 ttcggcgccgggtggtggttctgggtcgacgccgtcgtctgcagctccgtccaggtctcc 164 Query: 222 ttcatccactacctgcccgggatcttcgcgtcgctggccgcgctcatgttcaattgcgtc 281 ||| |||||||||| |||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 165 ttcctccactacctacccgggatattcgcgtcgctggccgcgctcatgttcaacgccgtg 224 Query: 282 gacaaggatgccatcgggaacgactactactcgtcctatggggatgattccgagtggagg 341 ||||||||| ||||| ||||||| |||||| |||| ||||| ||||||||||||||| Sbjct: 225 aacaaggatgagatcggatacgactattactcgccctacggggacgattccgagtggagg 284 Query: 342 gtgaagctttggcttttcgtcgcctatgttgtctctttcgtctgcctagctggatcagtg 401 ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||| Sbjct: 285 gtgaagctttggctttttgtggcgtatgttgtctctttcgtctgcctagctggatcagtg 344 Query: 402 ggtttgctggtgcaagatgccttgacagacaagggcccttctgtgtggactggtgttgct 461 ||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 345 ggtatgttggtgcaagatgccttgacagacaaaggcccttctgtgtggactggtgttgct 404 Query: 462 ggcgttctgcaatgcgtttttgtgttgataagtgggttgacatactggacgtgccacacc 521 || ||||||||||| ||| |||| |||||||||||||||| ||| |||||||| ||| | Sbjct: 405 ggtgttctgcaatgtgttcttgtattgataagtgggttgatatattggacgtgtcactct 464 Query: 522 gaggacta 529 |||||||| Sbjct: 465 gaggacta 472
>dbj|AK120561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132I06, full insert sequence Length = 666 Score = 523 bits (264), Expect = e-145 Identities = 387/428 (90%) Strand = Plus / Plus Query: 102 gccatggagaacctggcgatgctgtgggcgatcatcgggccgggcgtcgccggcgcgctc 161 ||||||||||| || ||| |||| |||| ||||||||||||||| |||||||| ||| || Sbjct: 46 gccatggagaatcttgcgctgctttgggggatcatcgggccgggagtcgccggtgcggtc 105 Query: 162 ttcggcgccggatggtggttctgggtcgacgccgtcgtctgcagcgccgtccaggtctcc 221 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 106 ttcggcgccgggtggtggttctgggtcgacgccgtcgtctgcagctccgtccaggtctcc 165 Query: 222 ttcatccactacctgcccgggatcttcgcgtcgctggccgcgctcatgttcaattgcgtc 281 ||| |||||||||| |||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 166 ttcctccactacctacccgggatattcgcgtcgctggccgcgctcatgttcaacgccgtg 225 Query: 282 gacaaggatgccatcgggaacgactactactcgtcctatggggatgattccgagtggagg 341 ||||||||| ||||| ||||||| |||||| |||| ||||| ||||||||||||||| Sbjct: 226 aacaaggatgagatcggatacgactattactcgccctacggggacgattccgagtggagg 285 Query: 342 gtgaagctttggcttttcgtcgcctatgttgtctctttcgtctgcctagctggatcagtg 401 ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||| Sbjct: 286 gtgaagctttggctttttgtggcgtatgttgtctctttcgtctgcctagctggatcagtg 345 Query: 402 ggtttgctggtgcaagatgccttgacagacaagggcccttctgtgtggactggtgttgct 461 ||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 346 ggtatgttggtgcaagatgccttgacagacaaaggcccttctgtgtggactggtgttgct 405 Query: 462 ggcgttctgcaatgcgtttttgtgttgataagtgggttgacatactggacgtgccacacc 521 || ||||||||||| ||| |||| |||||||||||||||| ||| |||||||| ||| | Sbjct: 406 ggtgttctgcaatgtgttcttgtattgataagtgggttgatatattggacgtgtcactct 465 Query: 522 gaggacta 529 |||||||| Sbjct: 466 gaggacta 473
>gb|DQ244312.1| Zea mays clone 4688 mRNA sequence Length = 645 Score = 329 bits (166), Expect = 1e-86 Identities = 313/362 (86%) Strand = Plus / Plus Query: 132 atcatcgggccgggcgtcgccggcgcgctcttcggcgccggatggtggttctgggtcgac 191 |||||||| |||||||| |||| || ||||||| |||||||||||||||||||| ||| Sbjct: 96 atcatcggcccgggcgtgtccggtgccatcttcggggccggatggtggttctgggtggac 155 Query: 192 gccgtcgtctgcagcgccgtccaggtctccttcatccactacctgcccgggatcttcgcg 251 || ||||| |||||||| ||||||||||||||| |||||||||| || ||||||||||| Sbjct: 156 gcggtcgtttgcagcgcggtccaggtctccttcctccactaccttccagggatcttcgct 215 Query: 252 tcgctggccgcgctcatgttcaattgcgtcgacaaggatgccatcgggaacgactactac 311 |||||||| |||||||||||||||||||| ||||||||| ||||| ||||||| ||| Sbjct: 216 tcgctggcggcgctcatgttcaattgcgtgaacaaggatgagatcggatacgactattac 275 Query: 312 tcgtcctatggggatgattccgagtggagggtgaagctttggcttttcgtcgcctatgtt 371 || |||| ||||| ||||| |||||||| |||||||| |||||||| || || ||||| Sbjct: 276 tcaccctacggggacgattcagagtggagagtgaagctctggctttttgtggcatatgtc 335 Query: 372 gtctctttcgtctgcctagctggatcagtgggtttgctggtgcaagatgccttgacagac 431 || ||||| ||||| |||||||||| |||||||| ||||||||||||| |||| || Sbjct: 336 gtttcttttgtctgtttagctggatccgtgggtttattggtgcaagatgcgctgacgaac 395 Query: 432 aagggcccttctgtgtggactggtgttgctggcgttctgcaatgcgtttttgtgttgata 491 |||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct: 396 aagggcccatctgtctggactggtgttgctggcgttctgcaatgtgttcttgtgttgata 455 Query: 492 ag 493 || Sbjct: 456 ag 457
>dbj|AK121475.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148P12, full insert sequence Length = 466 Score = 270 bits (136), Expect = 8e-69 Identities = 214/240 (89%) Strand = Plus / Plus Query: 102 gccatggagaacctggcgatgctgtgggcgatcatcgggccgggcgtcgccggcgcgctc 161 ||||||||||| || ||| |||| |||| ||||||||||||||| |||||||| ||| || Sbjct: 46 gccatggagaatcttgcgctgctttgggggatcatcgggccgggagtcgccggtgcggtc 105 Query: 162 ttcggcgccggatggtggttctgggtcgacgccgtcgtctgcagcgccgtccaggtctcc 221 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 106 ttcggcgccgggtggtggttctgggtcgacgccgtcgtctgcagctccgtccaggtctcc 165 Query: 222 ttcatccactacctgcccgggatcttcgcgtcgctggccgcgctcatgttcaattgcgtc 281 ||| |||||||||| |||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 166 ttcctccactacctacccgggatattcgcgtcgctggccgcgctcatgttcaacgccgtg 225 Query: 282 gacaaggatgccatcgggaacgactactactcgtcctatggggatgattccgagtggagg 341 ||||||||| ||||| ||||||| |||||| |||| ||||| ||||||||||||||| Sbjct: 226 aacaaggatgagatcggatacgactattactcgccctacggggacgattccgagtggagg 285
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 228 bits (115), Expect = 3e-56 Identities = 145/155 (93%) Strand = Plus / Minus Query: 339 agggtgaagctttggcttttcgtcgcctatgttgtctctttcgtctgcctagctggatca 398 |||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| Sbjct: 16934049 agggtgaagctttggctttttgtggcgtatgttgtctctttcgtctgcctagctggatca 16933990 Query: 399 gtgggtttgctggtgcaagatgccttgacagacaagggcccttctgtgtggactggtgtt 458 |||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 16933989 gtgggtatgttggtgcaagatgccttgacagacaaaggcccttctgtgtggactggtgtt 16933930 Query: 459 gctggcgttctgcaatgcgtttttgtgttgataag 493 ||||| ||||||||||| ||| |||| |||||||| Sbjct: 16933929 gctggtgttctgcaatgtgttcttgtattgataag 16933895 Score = 182 bits (92), Expect = 1e-42 Identities = 128/140 (91%) Strand = Plus / Minus Query: 102 gccatggagaacctggcgatgctgtgggcgatcatcgggccgggcgtcgccggcgcgctc 161 ||||||||||| || ||| |||| |||| ||||||||||||||| |||||||| ||| || Sbjct: 16935678 gccatggagaatcttgcgctgctttgggggatcatcgggccgggagtcgccggtgcggtc 16935619 Query: 162 ttcggcgccggatggtggttctgggtcgacgccgtcgtctgcagcgccgtccaggtctcc 221 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 16935618 ttcggcgccgggtggtggttctgggtcgacgccgtcgtctgcagctccgtccaggtctcc 16935559 Query: 222 ttcatccactacctgcccgg 241 ||| |||||||||| ||||| Sbjct: 16935558 ttcctccactacctacccgg 16935539 Score = 91.7 bits (46), Expect = 4e-15 Identities = 88/102 (86%) Strand = Plus / Minus Query: 240 gggatcttcgcgtcgctggccgcgctcatgttcaattgcgtcgacaaggatgccatcggg 299 ||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||| Sbjct: 16935441 gggatattcgcgtcgctggccgcgctcatgttcaacgccgtgaacaaggatgagatcgga 16935382 Query: 300 aacgactactactcgtcctatggggatgattccgagtggagg 341 ||||||| |||||| |||| ||||| ||||||||||||||| Sbjct: 16935381 tacgactattactcgccctacggggacgattccgagtggagg 16935340
>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0488D02 Length = 154537 Score = 228 bits (115), Expect = 3e-56 Identities = 145/155 (93%) Strand = Plus / Minus Query: 339 agggtgaagctttggcttttcgtcgcctatgttgtctctttcgtctgcctagctggatca 398 |||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| Sbjct: 63862 agggtgaagctttggctttttgtggcgtatgttgtctctttcgtctgcctagctggatca 63803 Query: 399 gtgggtttgctggtgcaagatgccttgacagacaagggcccttctgtgtggactggtgtt 458 |||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 63802 gtgggtatgttggtgcaagatgccttgacagacaaaggcccttctgtgtggactggtgtt 63743 Query: 459 gctggcgttctgcaatgcgtttttgtgttgataag 493 ||||| ||||||||||| ||| |||| |||||||| Sbjct: 63742 gctggtgttctgcaatgtgttcttgtattgataag 63708 Score = 182 bits (92), Expect = 1e-42 Identities = 128/140 (91%) Strand = Plus / Minus Query: 102 gccatggagaacctggcgatgctgtgggcgatcatcgggccgggcgtcgccggcgcgctc 161 ||||||||||| || ||| |||| |||| ||||||||||||||| |||||||| ||| || Sbjct: 65491 gccatggagaatcttgcgctgctttgggggatcatcgggccgggagtcgccggtgcggtc 65432 Query: 162 ttcggcgccggatggtggttctgggtcgacgccgtcgtctgcagcgccgtccaggtctcc 221 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 65431 ttcggcgccgggtggtggttctgggtcgacgccgtcgtctgcagctccgtccaggtctcc 65372 Query: 222 ttcatccactacctgcccgg 241 ||| |||||||||| ||||| Sbjct: 65371 ttcctccactacctacccgg 65352 Score = 91.7 bits (46), Expect = 4e-15 Identities = 88/102 (86%) Strand = Plus / Minus Query: 240 gggatcttcgcgtcgctggccgcgctcatgttcaattgcgtcgacaaggatgccatcggg 299 ||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||| Sbjct: 65254 gggatattcgcgtcgctggccgcgctcatgttcaacgccgtgaacaaggatgagatcgga 65195 Query: 300 aacgactactactcgtcctatggggatgattccgagtggagg 341 ||||||| |||||| |||| ||||| ||||||||||||||| Sbjct: 65194 tacgactattactcgccctacggggacgattccgagtggagg 65153
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 155 bits (78), Expect = 3e-34 Identities = 126/142 (88%) Strand = Plus / Minus Query: 100 cggccatggagaacctggcgatgctgtgggcgatcatcgggccgggcgtcgccggcgcgc 159 |||||||||| ||||||||| ||||| ||| ||| |||| ||||| ||||||||||| Sbjct: 23067316 cggccatggataacctggcgctgctgcggggaatcctcggcccgggggtcgccggcgccg 23067257 Query: 160 tcttcggcgccggatggtggttctgggtcgacgccgtcgtctgcagcgccgtccaggtct 219 |||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23067256 tctttggcgtgggttggtggttctgggtcgacgccgtcgtctgcagcgccgtccaggtct 23067197 Query: 220 ccttcatccactacctgcccgg 241 ||||| |||||||||| ||||| Sbjct: 23067196 ccttcctccactacctccccgg 23067175 Score = 107 bits (54), Expect = 7e-20 Identities = 93/106 (87%) Strand = Plus / Minus Query: 388 tagctggatcagtgggtttgctggtgcaagatgccttgacagacaagggcccttctgtgt 447 ||||||| |||| |||||| ||||||||||||| ||||| ||||||||||| ||||||| Sbjct: 23065150 tagctggtgcagttggtttgttggtgcaagatgctttgactgacaagggcccgtctgtgt 23065091 Query: 448 ggactggtgttgctggcgttctgcaatgcgtttttgtgttgataag 493 |||||||||| ||||| ||||||||||| || |||| |||||||| Sbjct: 23065090 ggactggtgtagctggtgttctgcaatgtgtccttgtattgataag 23065045 Score = 48.1 bits (24), Expect = 0.053 Identities = 36/40 (90%) Strand = Plus / Minus Query: 241 ggatcttcgcgtcgctggccgcgctcatgttcaattgcgt 280 |||||||||| |||||||| || ||||||||||| ||||| Sbjct: 23067098 ggatcttcgcctcgctggcggcactcatgttcaactgcgt 23067059
>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470B03 Length = 163371 Score = 155 bits (78), Expect = 3e-34 Identities = 126/142 (88%) Strand = Plus / Minus Query: 100 cggccatggagaacctggcgatgctgtgggcgatcatcgggccgggcgtcgccggcgcgc 159 |||||||||| ||||||||| ||||| ||| ||| |||| ||||| ||||||||||| Sbjct: 127044 cggccatggataacctggcgctgctgcggggaatcctcggcccgggggtcgccggcgccg 126985 Query: 160 tcttcggcgccggatggtggttctgggtcgacgccgtcgtctgcagcgccgtccaggtct 219 |||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126984 tctttggcgtgggttggtggttctgggtcgacgccgtcgtctgcagcgccgtccaggtct 126925 Query: 220 ccttcatccactacctgcccgg 241 ||||| |||||||||| ||||| Sbjct: 126924 ccttcctccactacctccccgg 126903 Score = 107 bits (54), Expect = 7e-20 Identities = 93/106 (87%) Strand = Plus / Minus Query: 388 tagctggatcagtgggtttgctggtgcaagatgccttgacagacaagggcccttctgtgt 447 ||||||| |||| |||||| ||||||||||||| ||||| ||||||||||| ||||||| Sbjct: 124878 tagctggtgcagttggtttgttggtgcaagatgctttgactgacaagggcccgtctgtgt 124819 Query: 448 ggactggtgttgctggcgttctgcaatgcgtttttgtgttgataag 493 |||||||||| ||||| ||||||||||| || |||| |||||||| Sbjct: 124818 ggactggtgtagctggtgttctgcaatgtgtccttgtattgataag 124773 Score = 48.1 bits (24), Expect = 0.053 Identities = 36/40 (90%) Strand = Plus / Minus Query: 241 ggatcttcgcgtcgctggccgcgctcatgttcaattgcgt 280 |||||||||| |||||||| || ||||||||||| ||||| Sbjct: 126826 ggatcttcgcctcgctggcggcactcatgttcaactgcgt 126787
>gb|AY110098.1| Zea mays CL30475_1 mRNA sequence Length = 603 Score = 119 bits (60), Expect = 2e-23 Identities = 93/104 (89%) Strand = Plus / Plus Query: 390 gctggatcagtgggtttgctggtgcaagatgccttgacagacaagggcccttctgtgtgg 449 |||||||| |||||||| ||||||||||||| |||| |||||||||| ||||| ||| Sbjct: 301 gctggatccgtgggtttattggtgcaagatgcgctgacgaacaagggcccatctgtctgg 360 Query: 450 actggtgttgctggcgttctgcaatgcgtttttgtgttgataag 493 |||||||||||||||||||||||||| ||| ||||||||||||| Sbjct: 361 actggtgttgctggcgttctgcaatgtgttcttgtgttgataag 404 Score = 93.7 bits (47), Expect = 1e-15 Identities = 98/115 (85%) Strand = Plus / Plus Query: 240 gggatcttcgcgtcgctggccgcgctcatgttcaattgcgtcgacaaggatgccatcggg 299 ||||| ||||| |||||||| |||||||||||||||||||| ||||||||| ||||| Sbjct: 151 gggattttcgcttcgctggcggcgctcatgttcaattgcgtgaacaaggatgagatcgga 210 Query: 300 aacgactactactcgtcctatggggatgattccgagtggagggtgaagctttggc 354 ||||||| ||||| |||| ||||| ||||| |||||||| |||||||| |||| Sbjct: 211 tacgactattactcaccctacggggacgattcagagtggagagtgaagctctggc 265 Score = 61.9 bits (31), Expect = 4e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 132 atcatcgggccgggcgtcgccggcgcgctcttcggcgccggatggtggttctgggtcgac 191 |||||||| |||||||| |||| || ||||||| |||||||||||||||||||| ||| Sbjct: 43 atcatcggcccgggcgtgtccggtgccatcttcggggccggatggtggttctgggtggac 102 Query: 192 gccgtcgtctgcagc 206 | ||||| |||||| Sbjct: 103 ccggtcgtttgcagc 117
>emb|CT829293.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN032E08, full insert sequence Length = 705 Score = 109 bits (55), Expect = 2e-20 Identities = 121/143 (84%) Strand = Plus / Plus Query: 138 gggccgggcgtcgccggcgcgctcttcggcgccggatggtggttctgggtcgacgccgtc 197 |||||||||||||||||||| | ||||| | ||| |||||||||||||||||||||||| Sbjct: 87 gggccgggcgtcgccggcgccgtattcggggtcggctggtggttctgggtcgacgccgtc 146 Query: 198 gtctgcagcgccgtccaggtctccttcatccactacctgcccgggatcttcgcgtcgctg 257 ||||||||||||| | ||| | ||| | |||||||| |||||| | || || ||| | Sbjct: 147 gtctgcagcgccgccgccgtcccgttccttcactacctccccgggttatttgcttcgttc 206 Query: 258 gccgcgctcatgttcaattgcgt 280 ||||||||||||||||| ||||| Sbjct: 207 gccgcgctcatgttcaactgcgt 229 Score = 50.1 bits (25), Expect = 0.013 Identities = 55/65 (84%) Strand = Plus / Plus Query: 447 tggactggtgttgctggcgttctgcaatgcgtttttgtgttgataagtgggttgacatac 506 |||||||||||||||||||| || || | || |||||| | ||||||||||||| ||| Sbjct: 393 tggactggtgttgctggcgtcctacagtctgtgtttgtgcttataagtgggttgatgtac 452 Query: 507 tggac 511 ||||| Sbjct: 453 tggac 457
>ref|NM_001053710.1| Oryza sativa (japonica cultivar-group) Os02g0566900 (Os02g0566900) mRNA, complete cds Length = 731 Score = 109 bits (55), Expect = 2e-20 Identities = 121/143 (84%) Strand = Plus / Plus Query: 138 gggccgggcgtcgccggcgcgctcttcggcgccggatggtggttctgggtcgacgccgtc 197 |||||||||||||||||||| | ||||| | ||| |||||||||||||||||||||||| Sbjct: 109 gggccgggcgtcgccggcgccgtattcggggtcggctggtggttctgggtcgacgccgtc 168 Query: 198 gtctgcagcgccgtccaggtctccttcatccactacctgcccgggatcttcgcgtcgctg 257 ||||||||||||| | ||| | ||| | |||||||| |||||| | || || ||| | Sbjct: 169 gtctgcagcgccgccgccgtcccgttccttcactacctccccgggttatttgcttcgttc 228 Query: 258 gccgcgctcatgttcaattgcgt 280 ||||||||||||||||| ||||| Sbjct: 229 gccgcgctcatgttcaactgcgt 251 Score = 50.1 bits (25), Expect = 0.013 Identities = 55/65 (84%) Strand = Plus / Plus Query: 447 tggactggtgttgctggcgttctgcaatgcgtttttgtgttgataagtgggttgacatac 506 |||||||||||||||||||| || || | || |||||| | ||||||||||||| ||| Sbjct: 415 tggactggtgttgctggcgtcctacagtctgtgtttgtgcttataagtgggttgatgtac 474 Query: 507 tggac 511 ||||| Sbjct: 475 tggac 479
>dbj|AK068953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003M06, full insert sequence Length = 733 Score = 109 bits (55), Expect = 2e-20 Identities = 121/143 (84%) Strand = Plus / Plus Query: 138 gggccgggcgtcgccggcgcgctcttcggcgccggatggtggttctgggtcgacgccgtc 197 |||||||||||||||||||| | ||||| | ||| |||||||||||||||||||||||| Sbjct: 111 gggccgggcgtcgccggcgccgtattcggggtcggctggtggttctgggtcgacgccgtc 170 Query: 198 gtctgcagcgccgtccaggtctccttcatccactacctgcccgggatcttcgcgtcgctg 257 ||||||||||||| | ||| | ||| | |||||||| |||||| | || || ||| | Sbjct: 171 gtctgcagcgccgccgccgtcccgttccttcactacctccccgggttatttgcttcgttc 230 Query: 258 gccgcgctcatgttcaattgcgt 280 ||||||||||||||||| ||||| Sbjct: 231 gccgcgctcatgttcaactgcgt 253 Score = 50.1 bits (25), Expect = 0.013 Identities = 55/65 (84%) Strand = Plus / Plus Query: 447 tggactggtgttgctggcgttctgcaatgcgtttttgtgttgataagtgggttgacatac 506 |||||||||||||||||||| || || | || |||||| | ||||||||||||| ||| Sbjct: 417 tggactggtgttgctggcgtcctacagtctgtgtttgtgcttataagtgggttgatgtac 476 Query: 507 tggac 511 ||||| Sbjct: 477 tggac 481
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 97.6 bits (49), Expect = 6e-17 Identities = 67/73 (91%) Strand = Plus / Minus Query: 138 gggccgggcgtcgccggcgcgctcttcggcgccggatggtggttctgggtcgacgccgtc 197 |||||||||||||||||||| | ||||| | ||| |||||||||||||||||||||||| Sbjct: 21580036 gggccgggcgtcgccggcgccgtattcggggtcggctggtggttctgggtcgacgccgtc 21579977 Query: 198 gtctgcagcgccg 210 ||||||||||||| Sbjct: 21579976 gtctgcagcgccg 21579964
>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020D05 Length = 158760 Score = 97.6 bits (49), Expect = 6e-17 Identities = 67/73 (91%) Strand = Plus / Minus Query: 138 gggccgggcgtcgccggcgcgctcttcggcgccggatggtggttctgggtcgacgccgtc 197 |||||||||||||||||||| | ||||| | ||| |||||||||||||||||||||||| Sbjct: 68986 gggccgggcgtcgccggcgccgtattcggggtcggctggtggttctgggtcgacgccgtc 68927 Query: 198 gtctgcagcgccg 210 ||||||||||||| Sbjct: 68926 gtctgcagcgccg 68914
>emb|CT835001.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN053I19, full insert sequence Length = 1156 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 139 ggccgggcgtcgccggcgcgctcttcggcgccgg 172 ||||||||||||||| |||||||||||||||||| Sbjct: 185 ggccgggcgtcgccgccgcgctcttcggcgccgg 218
>ref|NM_001049140.1| Oryza sativa (japonica cultivar-group) Os01g0252600 (Os01g0252600) mRNA, complete cds Length = 1152 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 139 ggccgggcgtcgccggcgcgctcttcggcgccgg 172 ||||||||||||||| |||||||||||||||||| Sbjct: 344 ggccgggcgtcgccgccgcgctcttcggcgccgg 377
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 139 ggccgggcgtcgccggcgcgctcttcggcgccgg 172 ||||||||||||||| |||||||||||||||||| Sbjct: 8343655 ggccgggcgtcgccgccgcgctcttcggcgccgg 8343688
>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0434D08 Length = 161266 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 139 ggccgggcgtcgccggcgcgctcttcggcgccgg 172 ||||||||||||||| |||||||||||||||||| Sbjct: 137586 ggccgggcgtcgccgccgcgctcttcggcgccgg 137619
>dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0503G09 Length = 59843 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 139 ggccgggcgtcgccggcgcgctcttcggcgccgg 172 ||||||||||||||| |||||||||||||||||| Sbjct: 8281 ggccgggcgtcgccgccgcgctcttcggcgccgg 8314
>ref|NM_103353.2| Arabidopsis thaliana unknown protein (AT1G36980) mRNA, complete cds Length = 663 Score = 52.0 bits (26), Expect = 0.003 Identities = 68/82 (82%) Strand = Plus / Plus Query: 169 ccggatggtggttctgggtcgacgccgtcgtctgcagcgccgtccaggtctccttcatcc 228 |||| |||||||| ||||||||||||||||| ||||| || |||| || ||||| ||| Sbjct: 103 ccgggtggtggttttgggtcgacgccgtcgtttgcagttccatccaagttcccttcgtcc 162 Query: 229 actacctgcccgggatcttcgc 250 | ||||| ||||| || ||||| Sbjct: 163 attaccttcccggcatattcgc 184
>gb|AY079344.1| Arabidopsis thaliana unknown protein (At1g36980) mRNA, complete cds Length = 439 Score = 52.0 bits (26), Expect = 0.003 Identities = 68/82 (82%) Strand = Plus / Plus Query: 169 ccggatggtggttctgggtcgacgccgtcgtctgcagcgccgtccaggtctccttcatcc 228 |||| |||||||| ||||||||||||||||| ||||| || |||| || ||||| ||| Sbjct: 62 ccgggtggtggttttgggtcgacgccgtcgtttgcagttccatccaagttcccttcgtcc 121 Query: 229 actacctgcccgggatcttcgc 250 | ||||| ||||| || ||||| Sbjct: 122 attaccttcccggcatattcgc 143
>gb|AY050785.1| Arabidopsis thaliana unknown protein (At1g36980) mRNA, complete cds Length = 695 Score = 52.0 bits (26), Expect = 0.003 Identities = 68/82 (82%) Strand = Plus / Plus Query: 169 ccggatggtggttctgggtcgacgccgtcgtctgcagcgccgtccaggtctccttcatcc 228 |||| |||||||| ||||||||||||||||| ||||| || |||| || ||||| ||| Sbjct: 103 ccgggtggtggttttgggtcgacgccgtcgtttgcagttccatccaagttcccttcgtcc 162 Query: 229 actacctgcccgggatcttcgc 250 | ||||| ||||| || ||||| Sbjct: 163 attaccttcccggcatattcgc 184
>emb|BX815339.1|CNS0ABH2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS53ZD07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 580 Score = 52.0 bits (26), Expect = 0.003 Identities = 68/82 (82%) Strand = Plus / Plus Query: 169 ccggatggtggttctgggtcgacgccgtcgtctgcagcgccgtccaggtctccttcatcc 228 |||| |||||||| ||||||||||||||||| ||||| || |||| || ||||| ||| Sbjct: 58 ccgggtggtggttttgggtcgacgccgtcgtttgcagttccatccaagttcccttcgtcc 117 Query: 229 actacctgcccgggatcttcgc 250 | ||||| ||||| || ||||| Sbjct: 118 attaccttcccggcatattcgc 139
>gb|AC020646.2|AC020646 Genomic sequence for Arabidopsis thaliana BAC T32E20 from chromosome I, complete sequence Length = 103931 Score = 50.1 bits (25), Expect = 0.013 Identities = 34/37 (91%) Strand = Plus / Minus Query: 169 ccggatggtggttctgggtcgacgccgtcgtctgcag 205 |||| |||||||| ||||||||||||||||| ||||| Sbjct: 80459 ccgggtggtggttttgggtcgacgccgtcgtttgcag 80423
>gb|CP000325.1| Mycobacterium ulcerans Agy99, complete genome Length = 5631606 Score = 44.1 bits (22), Expect = 0.83 Identities = 25/26 (96%) Strand = Plus / Plus Query: 147 gtcgccggcgcgctcttcggcgccgg 172 ||||||||||||| |||||||||||| Sbjct: 400975 gtcgccggcgcgcccttcggcgccgg 401000
>gb|CP000481.1| Acidothermus cellulolyticus 11B, complete genome Length = 2443540 Score = 44.1 bits (22), Expect = 0.83 Identities = 25/26 (96%) Strand = Plus / Minus Query: 164 cggcgccggatggtggttctgggtcg 189 ||||||||| |||||||||||||||| Sbjct: 112833 cggcgccggctggtggttctgggtcg 112808
>gb|AC020626.6|AC020626 Homo sapiens 3 BAC RP11-41F5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170346 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 651 tgggtgtctgtgtgtgcatagc 672 |||||||||||||||||||||| Sbjct: 135026 tgggtgtctgtgtgtgcatagc 135047
>emb|AM236080.1| Rhizobium leguminosarum bv. viciae chromosome complete genome, strain 3841 Length = 5057142 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 tcgccggcgcgctcttcggcg 168 ||||||||||||||||||||| Sbjct: 624549 tcgccggcgcgctcttcggcg 624569
>gb|AC151782.1| Ornithorhynchus anatinus chromosome UNK clone OABb-208A1, complete sequence Length = 145600 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 555 actaggatggctggtaaaaat 575 ||||||||||||||||||||| Sbjct: 58567 actaggatggctggtaaaaat 58587
>gb|AC132120.3| Mus musculus BAC clone RP23-479B19 from chromosome 8, complete sequence Length = 173226 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 654 gtgtctgtgtgtgcatagctg 674 ||||||||||||||||||||| Sbjct: 18162 gtgtctgtgtgtgcatagctg 18182
>gb|AC104445.2| Homo sapiens chromosome 3 clone RP11-444P10, complete sequence Length = 201218 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 613 cctgtgtaaaaaatatgttca 633 ||||||||||||||||||||| Sbjct: 31376 cctgtgtaaaaaatatgttca 31356
>gb|AC106884.5| Homo sapiens BAC clone RP11-1366O24 from 4, complete sequence Length = 203424 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 715 atgtttttatcctaatttgtt 735 ||||||||||||||||||||| Sbjct: 139162 atgtttttatcctaatttgtt 139142
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 142 cgggcgtcgccggcgcgctct 162 ||||||||||||||||||||| Sbjct: 1616517 cgggcgtcgccggcgcgctct 1616497
>gb|AC154343.1| Mus musculus BAC clone RP23-235M17 from 17, complete sequence Length = 172493 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 609 tggtcctgtgtaaaaaatatg 629 ||||||||||||||||||||| Sbjct: 98337 tggtcctgtgtaaaaaatatg 98357 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 144,224,417 Number of extensions: 7661675 Number of successful extensions: 141502 Number of sequences better than 10.0: 36 Number of HSP's gapped: 141492 Number of HSP's successfully gapped: 50 Length of query: 866 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 844 Effective length of database: 18,508,616,841 Effective search space: 15621272613804 Effective search space used: 15621272613804 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)