ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf85c09 |
|---|---|
| Clone Library Name | barley_pub |
>Q7ZVT3:SAS6_DANRE Spindle assembly abnormal protein 6 homolog - Danio rerio| (Zebrafish) (Brachydanio rerio) Length = 627 Score = 32.3 bits (72), Expect = 1.5 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = +2 Query: 182 SSSAMRDLQSKLDAATKECLAEKEQNRKLTVENEKLQYRVSHLIRTIKEAESR 340 S S +RDL++KL + +EC K+Q L EN L R + + ++R Sbjct: 275 SDSTIRDLKAKLTSLEEECQRSKQQVLSLRRENSALDSECHEKERLLNQLQTR 327
>Q9NJP2:NACH_DROVI Sodium channel protein Nach - Drosophila virilis (Fruit fly)| Length = 384 Score = 31.6 bits (70), Expect = 2.5 Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Frame = -3 Query: 391 IEIIELVLLDPVYQRLLP*LRL-FDCSDEMGHTVLELLVLHGEL---PVLFLLSKTFFGS 224 IE++E VLLD + RL +DC H +L HG++ LF LSKTFFG Sbjct: 21 IELMESVLLDNNLTMVQFVDRLRWDC-----HELLHRCRYHGDIMDCTQLFQLSKTFFGH 75 Query: 223 CVKL*LKISHG 191 C L+ HG Sbjct: 76 CCSFNLR-QHG 85
>Q6NZW0:C102A_DANRE Coiled-coil domain-containing protein 102A - Danio rerio| (Zebrafish) (Brachydanio rerio) Length = 581 Score = 31.6 bits (70), Expect = 2.5 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = +2 Query: 194 MRDLQSKLDAATKECLAEKEQNRKLTVENEKLQ 292 +R L+ +LDA TKE + + ++L ENE+L+ Sbjct: 120 VRQLRQRLDALTKELTGARRERQELAAENEQLR 152
>Q9NTJ3:SMC4_HUMAN Structural maintenance of chromosomes protein 4 - Homo sapiens| (Human) Length = 1288 Score = 31.2 bits (69), Expect = 3.3 Identities = 15/50 (30%), Positives = 30/50 (60%) Frame = +2 Query: 188 SAMRDLQSKLDAATKECLAEKEQNRKLTVENEKLQYRVSHLIRTIKEAES 337 +A+RD++ KL +E ++++ +KLT E + V L + ++EA+S Sbjct: 539 AAIRDIEGKLPQTEQELKEKEKELQKLTQEETNFKSLVHDLFQKVEEAKS 588
>Q9Y6K9:NEMO_HUMAN NF-kappa-B essential modulator - Homo sapiens (Human)| Length = 419 Score = 31.2 bits (69), Expect = 3.3 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 7/44 (15%) Frame = +2 Query: 194 MRDLQSKLDAATKEC-------LAEKEQNRKLTVENEKLQYRVS 304 +++ QS+L+AATKEC A EQ R+L E E LQ + S Sbjct: 153 LQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHS 196
>Q8VDN4:CCD92_MOUSE Coiled-coil domain-containing protein 92 - Mus musculus (Mouse)| Length = 314 Score = 31.2 bits (69), Expect = 3.3 Identities = 16/53 (30%), Positives = 30/53 (56%) Frame = +2 Query: 182 SSSAMRDLQSKLDAATKECLAEKEQNRKLTVENEKLQYRVSHLIRTIKEAESR 340 SSS +L+ + + + A++E+NRKL E E+ ++ L T++E E + Sbjct: 60 SSSRTTELKRRCEELEAQLKAKEEENRKLLQELEQKNAAIAVLENTVREREKK 112
>P34248:YKK0_YEAST Uncharacterized membrane protein YKL100C - Saccharomyces cerevisiae| (Baker's yeast) Length = 587 Score = 30.8 bits (68), Expect = 4.3 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 10/68 (14%) Frame = +2 Query: 164 DGSSEASSSAMRDLQSKLD--AATKECLAEKEQ--------NRKLTVENEKLQYRVSHLI 313 D SE SS A R+ S + A+ KE EQ N KLT +K+ YRV+H I Sbjct: 10 DHLSEWSSRAFRNNSSSANQSASNKELEQVFEQINAIVENHNNKLTTAFDKISYRVAHKI 69 Query: 314 RTIKEAES 337 + E+ S Sbjct: 70 THLVESHS 77
>P35749:MYH11_HUMAN Myosin-11 - Homo sapiens (Human)| Length = 1972 Score = 30.4 bits (67), Expect = 5.6 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = +2 Query: 206 QSKLDAATKECLAEKEQNRKLTVENEKLQYRVSHLIRTIKEAESR*KPL 352 ++K+ E L +QN KL+ E + L+ R+S L + E E + K L Sbjct: 977 EAKIKKLEDEILVMDDQNNKLSKERKLLEERISDLTTNLAEEEEKAKNL 1025
>P10587:MYH11_CHICK Myosin-11 - Gallus gallus (Chicken)| Length = 1979 Score = 30.4 bits (67), Expect = 5.6 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +2 Query: 212 KLDAATKECLAEKEQNRKLTVENEKLQYRVSHLIRTIKEAESR*KPL 352 K+ + L ++QN KLT E + L+ RVS L + E E + K L Sbjct: 985 KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1031
>O88583:SOCS3_RAT Suppressor of cytokine signaling 3 - Rattus norvegicus (Rat)| Length = 225 Score = 30.0 bits (66), Expect = 7.3 Identities = 13/26 (50%), Positives = 20/26 (76%) Frame = +2 Query: 515 LASNVLKVSYLCRRTLNGVLLSQQKM 592 L+SNV + +LCR+T+NG L S +K+ Sbjct: 182 LSSNVATLQHLCRKTVNGHLDSYEKV 207
>O35718:SOCS3_MOUSE Suppressor of cytokine signaling 3 - Mus musculus (Mouse)| Length = 225 Score = 30.0 bits (66), Expect = 7.3 Identities = 13/26 (50%), Positives = 20/26 (76%) Frame = +2 Query: 515 LASNVLKVSYLCRRTLNGVLLSQQKM 592 L+SNV + +LCR+T+NG L S +K+ Sbjct: 182 LSSNVATLQHLCRKTVNGHLDSYEKV 207
>O14543:SOCS3_HUMAN Suppressor of cytokine signaling 3 - Homo sapiens (Human)| Length = 225 Score = 30.0 bits (66), Expect = 7.3 Identities = 13/26 (50%), Positives = 20/26 (76%) Frame = +2 Query: 515 LASNVLKVSYLCRRTLNGVLLSQQKM 592 L+SNV + +LCR+T+NG L S +K+ Sbjct: 182 LSSNVATLQHLCRKTVNGHLDSYEKV 207
>Q68AM8:SOCS3_CANFA Suppressor of cytokine signaling 3 - Canis familiaris (Dog)| Length = 225 Score = 30.0 bits (66), Expect = 7.3 Identities = 13/26 (50%), Positives = 20/26 (76%) Frame = +2 Query: 515 LASNVLKVSYLCRRTLNGVLLSQQKM 592 L+SNV + +LCR+T+NG L S +K+ Sbjct: 182 LSSNVATLQHLCRKTVNGHLDSYEKV 207
>Q9BEG9:SOCS3_BOVIN Suppressor of cytokine signaling 3 - Bos taurus (Bovine)| Length = 229 Score = 30.0 bits (66), Expect = 7.3 Identities = 13/26 (50%), Positives = 20/26 (76%) Frame = +2 Query: 515 LASNVLKVSYLCRRTLNGVLLSQQKM 592 L+SNV + +LCR+T+NG L S +K+ Sbjct: 186 LSSNVATLQHLCRKTVNGHLDSYEKV 211
>Q4J8L6:MTPE_SULAC Membrane-associated ATPase epsilon chain - Sulfolobus| acidocaldarius Length = 77 Score = 30.0 bits (66), Expect = 7.3 Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Frame = +2 Query: 161 KDGSSEASSSAMRDLQSKLDAATKECLAE--KEQNRKLTVENEKLQYRVSHLIRTIK 325 K+G ++ + + + +L+SKLDA KE L++ +E N+ L E L+ ++++ ++ Sbjct: 19 KEGGNKMAETYINELKSKLDARKKEILSQLNEEYNKILKSRFEDLESVKRNILKEVQ 75
>Q99089:CPRF1_PETCR Common plant regulatory factor CPRF-1 - Petroselinum crispum| (Parsley) (Petroselinum hortense) Length = 411 Score = 29.6 bits (65), Expect = 9.6 Identities = 16/46 (34%), Positives = 27/46 (58%) Frame = +2 Query: 200 DLQSKLDAATKECLAEKEQNRKLTVENEKLQYRVSHLIRTIKEAES 337 +L K+D+ T E +A K + +LT+ EKL S L+ +K A++ Sbjct: 296 ELAIKVDSLTAENMALKAEINRLTLTAEKLTNDNSRLLEVMKNAQA 341 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 92,856,272 Number of extensions: 1724860 Number of successful extensions: 4952 Number of sequences better than 10.0: 16 Number of HSP's gapped: 4951 Number of HSP's successfully gapped: 16 Length of query: 211 Length of database: 100,686,439 Length adjustment: 108 Effective length of query: 103 Effective length of database: 71,062,579 Effective search space: 7319445637 Effective search space used: 7319445637 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
