Clone Information

BLAST Search Result

Clone Name	FLbaf87i15
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AK058858:Os03g0765900	153	1e-37
2	AK071365:Os05g0350700	28	7.1
3	AK108649:Os12g0640700	28	7.2

>AK058858:Os03g0765900 |
          Length = 118
 Score =  153 bits (386), Expect = 1e-37
 Identities = 85/111 (76%), Positives = 92/111 (82%), Gaps = 2/111 (1%)
 Frame = +2

Query: 101 MASLSVAT-LPQLXXXXXXXXGKKRSGVTYVEGMNAYSGLKGLNKVTMLGVRKSADYKFA 277
           MASLS+AT LP L         +KRSGVTYVEGMNAYSGLK LNKVT+LGVRK+ADY FA
Sbjct: 1   MASLSMATTLPSLAGAAPA--ARKRSGVTYVEGMNAYSGLKALNKVTLLGVRKTADYSFA 58

Query: 278 RVVASLSPA-GKRRGGTFGAQCNAAGEIFQIAVVMNALTLVGVAVGFVLLR 427
           +VVA LSPA GK RGG FGAQCNAAGEIF+IAV+MN L LVGVAVGFVLLR
Sbjct: 59  KVVAKLSPAGGKSRGGAFGAQCNAAGEIFRIAVIMNGLVLVGVAVGFVLLR 109

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>AK071365:Os05g0350700 |
          Length = 1251

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 590  TKPNVKIAYITFYISR-LTRQPNSQNLTETAGQGRHTT 480
            TKP  K A I+  +S  LTR P SQ     +G GR  T
Sbjct: 1146 TKPKQKTANISAPVSSALTRDPQSQAKITPSGNGRDNT 1183

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>AK108649:Os12g0640700 |
          Length = 526

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 284 VASLSPAGKRRGGTFGAQCNAAGEIFQIAVVMNALTLVGVAV 409
           + +L PA +R+GG  G+  +    +F IA+   A  L+G  V
Sbjct: 66  IKTLPPASRRQGGGKGSSLSFITIVFGIALPTVAAVLIGFVV 107


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 13,134,706
Number of extensions: 245869
Number of successful extensions: 747
Number of sequences better than 10.0: 3
Number of HSP's gapped: 746
Number of HSP's successfully gapped: 3
Length of query: 221
Length of database: 15,399,855
Length adjustment: 97
Effective length of query: 124
Effective length of database: 11,515,878
Effective search space: 1427968872
Effective search space used: 1427968872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result