| Clone Name | FLbaf84n08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 93.7 bits (47), Expect = 1e-15 Identities = 122/147 (82%) Strand = Plus / Minus Query: 299 tacaacctctctctgaagctcatcgtccgcaaccggaactgggcgacgaccatgaagaac 358 ||||||||| | |||||||| |||||| |||||| |||||||||| | || | |||||| Sbjct: 8391169 tacaacctcaccctgaagctggtcgtccacaaccgcaactgggcgatgtccgtcaagaac 8391110 Query: 359 acggaaccgctggaggcggcgtacaagttcgatggccagcagttcgagcgcgtgcaggtc 418 || | || |||| || | |||||||||||| ||||||| ||||||||| | ||| || Sbjct: 8391109 accaagcccatggacgccgagtacaagttcgacggccagccgttcgagcggatccagctc 8391050 Query: 419 gccgacaagggcgacaagcacggcccc 445 ||||||||||||||||||| ||||||| Sbjct: 8391049 gccgacaagggcgacaagctcggcccc 8391023 Score = 91.7 bits (46), Expect = 4e-15 Identities = 109/130 (83%) Strand = Plus / Minus Query: 324 tccgcaaccggaactgggcgacgaccatgaagaacacggaaccgctggaggcggcgtaca 383 |||||||||| |||||||| | | ||||||||||| || ||||| ||||| || |||| Sbjct: 8439589 tccgcaaccgcaactgggccatgtccatgaagaacgtcgagccgctcgaggccgcctaca 8439530 Query: 384 agttcgatggccagcagttcgagcgcgtgcaggtcgccgacaagggcgacaagcacggcc 443 |||||| |||||||||||||| ||| | ||| ||||||||||||||| |||||| || | Sbjct: 8439529 ggttcgacggccagcagttcgaccgcatccagctcgccgacaagggcgccaagcaggggc 8439470 Query: 444 ccaggaagac 453 ||| |||||| Sbjct: 8439469 ccaagaagac 8439460 Score = 73.8 bits (37), Expect = 9e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 506 aacgccggcgtcgcggcgtacaaggagcagaacaagaccggggagttcgagctggaggtg 565 |||||||||||||| | || |||| || ||||| ||| |||| ||||||| |||||||| Sbjct: 8414707 aacgccggcgtcgccgagttcaagaaggagaacgcgacgggggtgttcgaggtggaggtg 8414648 Query: 566 gcggtcaccggcgaggt 582 ||||||||||||||||| Sbjct: 8414647 gcggtcaccggcgaggt 8414631 Score = 61.9 bits (31), Expect = 4e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 213 gcttcgccctccagccctccatcaccgtcgaggacgcctccct 255 |||||| | |||||||||||||||||||||| ||||||||||| Sbjct: 8439700 gcttcgtcgtccagccctccatcaccgtcgacgacgcctccct 8439658 Score = 58.0 bits (29), Expect = 5e-05 Identities = 77/93 (82%) Strand = Plus / Minus Query: 500 ctgggcaacgccggcgtcgcggcgtacaaggagcagaacaagaccggggagttcgagctg 559 |||||||||||||||||||| | || |||| || ||||| || ||| ||||||| || Sbjct: 8439410 ctgggcaacgccggcgtcgccgagttcaagaaggagaacgccacggggacgttcgaggtg 8439351 Query: 560 gaggtggcggtcaccggcgaggtgcggtacacg 592 ||||||| |||||||||| ||||| | |||||| Sbjct: 8439350 gaggtgggggtcaccggcaaggtgagctacacg 8439318 Score = 54.0 bits (27), Expect = 9e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 550 gttcgagctggaggtggcggtcaccggcgaggtgcggtacacg 592 ||||||| ||||||||||| || ||||||||||| |||||||| Sbjct: 8390915 gttcgaggtggaggtggcgatcgccggcgaggtgaggtacacg 8390873
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0021G06 Length = 137678 Score = 93.7 bits (47), Expect = 1e-15 Identities = 122/147 (82%) Strand = Plus / Minus Query: 299 tacaacctctctctgaagctcatcgtccgcaaccggaactgggcgacgaccatgaagaac 358 ||||||||| | |||||||| |||||| |||||| |||||||||| | || | |||||| Sbjct: 96267 tacaacctcaccctgaagctggtcgtccacaaccgcaactgggcgatgtccgtcaagaac 96208 Query: 359 acggaaccgctggaggcggcgtacaagttcgatggccagcagttcgagcgcgtgcaggtc 418 || | || |||| || | |||||||||||| ||||||| ||||||||| | ||| || Sbjct: 96207 accaagcccatggacgccgagtacaagttcgacggccagccgttcgagcggatccagctc 96148 Query: 419 gccgacaagggcgacaagcacggcccc 445 ||||||||||||||||||| ||||||| Sbjct: 96147 gccgacaagggcgacaagctcggcccc 96121 Score = 73.8 bits (37), Expect = 9e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 506 aacgccggcgtcgcggcgtacaaggagcagaacaagaccggggagttcgagctggaggtg 565 |||||||||||||| | || |||| || ||||| ||| |||| ||||||| |||||||| Sbjct: 119805 aacgccggcgtcgccgagttcaagaaggagaacgcgacgggggtgttcgaggtggaggtg 119746 Query: 566 gcggtcaccggcgaggt 582 ||||||||||||||||| Sbjct: 119745 gcggtcaccggcgaggt 119729 Score = 54.0 bits (27), Expect = 9e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 550 gttcgagctggaggtggcggtcaccggcgaggtgcggtacacg 592 ||||||| ||||||||||| || ||||||||||| |||||||| Sbjct: 96013 gttcgaggtggaggtggcgatcgccggcgaggtgaggtacacg 95971
>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0056I06 Length = 138653 Score = 93.7 bits (47), Expect = 1e-15 Identities = 122/147 (82%) Strand = Plus / Minus Query: 299 tacaacctctctctgaagctcatcgtccgcaaccggaactgggcgacgaccatgaagaac 358 ||||||||| | |||||||| |||||| |||||| |||||||||| | || | |||||| Sbjct: 22762 tacaacctcaccctgaagctggtcgtccacaaccgcaactgggcgatgtccgtcaagaac 22703 Query: 359 acggaaccgctggaggcggcgtacaagttcgatggccagcagttcgagcgcgtgcaggtc 418 || | || |||| || | |||||||||||| ||||||| ||||||||| | ||| || Sbjct: 22702 accaagcccatggacgccgagtacaagttcgacggccagccgttcgagcggatccagctc 22643 Query: 419 gccgacaagggcgacaagcacggcccc 445 ||||||||||||||||||| ||||||| Sbjct: 22642 gccgacaagggcgacaagctcggcccc 22616 Score = 91.7 bits (46), Expect = 4e-15 Identities = 109/130 (83%) Strand = Plus / Minus Query: 324 tccgcaaccggaactgggcgacgaccatgaagaacacggaaccgctggaggcggcgtaca 383 |||||||||| |||||||| | | ||||||||||| || ||||| ||||| || |||| Sbjct: 71182 tccgcaaccgcaactgggccatgtccatgaagaacgtcgagccgctcgaggccgcctaca 71123 Query: 384 agttcgatggccagcagttcgagcgcgtgcaggtcgccgacaagggcgacaagcacggcc 443 |||||| |||||||||||||| ||| | ||| ||||||||||||||| |||||| || | Sbjct: 71122 ggttcgacggccagcagttcgaccgcatccagctcgccgacaagggcgccaagcaggggc 71063 Query: 444 ccaggaagac 453 ||| |||||| Sbjct: 71062 ccaagaagac 71053 Score = 73.8 bits (37), Expect = 9e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 506 aacgccggcgtcgcggcgtacaaggagcagaacaagaccggggagttcgagctggaggtg 565 |||||||||||||| | || |||| || ||||| ||| |||| ||||||| |||||||| Sbjct: 46300 aacgccggcgtcgccgagttcaagaaggagaacgcgacgggggtgttcgaggtggaggtg 46241 Query: 566 gcggtcaccggcgaggt 582 ||||||||||||||||| Sbjct: 46240 gcggtcaccggcgaggt 46224 Score = 61.9 bits (31), Expect = 4e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 213 gcttcgccctccagccctccatcaccgtcgaggacgcctccct 255 |||||| | |||||||||||||||||||||| ||||||||||| Sbjct: 71293 gcttcgtcgtccagccctccatcaccgtcgacgacgcctccct 71251 Score = 58.0 bits (29), Expect = 5e-05 Identities = 77/93 (82%) Strand = Plus / Minus Query: 500 ctgggcaacgccggcgtcgcggcgtacaaggagcagaacaagaccggggagttcgagctg 559 |||||||||||||||||||| | || |||| || ||||| || ||| ||||||| || Sbjct: 71003 ctgggcaacgccggcgtcgccgagttcaagaaggagaacgccacggggacgttcgaggtg 70944 Query: 560 gaggtggcggtcaccggcgaggtgcggtacacg 592 ||||||| |||||||||| ||||| | |||||| Sbjct: 70943 gaggtgggggtcaccggcaaggtgagctacacg 70911 Score = 54.0 bits (27), Expect = 9e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 550 gttcgagctggaggtggcggtcaccggcgaggtgcggtacacg 592 ||||||| ||||||||||| || ||||||||||| |||||||| Sbjct: 22508 gttcgaggtggaggtggcgatcgccggcgaggtgaggtacacg 22466
>ref|NM_001065834.1| Oryza sativa (japonica cultivar-group) Os07g0251200 (Os07g0251200) mRNA, complete cds Length = 729 Score = 91.7 bits (46), Expect = 4e-15 Identities = 109/130 (83%) Strand = Plus / Plus Query: 324 tccgcaaccggaactgggcgacgaccatgaagaacacggaaccgctggaggcggcgtaca 383 |||||||||| |||||||| | | ||||||||||| || ||||| ||||| || |||| Sbjct: 323 tccgcaaccgcaactgggccatgtccatgaagaacgtcgagccgctcgaggccgcctaca 382 Query: 384 agttcgatggccagcagttcgagcgcgtgcaggtcgccgacaagggcgacaagcacggcc 443 |||||| |||||||||||||| ||| | ||| ||||||||||||||| |||||| || | Sbjct: 383 ggttcgacggccagcagttcgaccgcatccagctcgccgacaagggcgccaagcaggggc 442 Query: 444 ccaggaagac 453 ||| |||||| Sbjct: 443 ccaagaagac 452 Score = 61.9 bits (31), Expect = 4e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 213 gcttcgccctccagccctccatcaccgtcgaggacgcctccct 255 |||||| | |||||||||||||||||||||| ||||||||||| Sbjct: 212 gcttcgtcgtccagccctccatcaccgtcgacgacgcctccct 254 Score = 58.0 bits (29), Expect = 5e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 500 ctgggcaacgccggcgtcgcggcgtacaaggagcagaacaagaccggggagttcgagctg 559 |||||||||||||||||||| | || |||| || ||||| || ||| ||||||| || Sbjct: 502 ctgggcaacgccggcgtcgccgagttcaagaaggagaacgccacggggacgttcgaggtg 561 Query: 560 gaggtggcggtcaccggcgaggtgcggtacacg 592 ||||||| |||||||||| ||||| | |||||| Sbjct: 562 gaggtgggggtcaccggcaaggtgagctacacg 594
>ref|NM_001065833.1| Oryza sativa (japonica cultivar-group) Os07g0250900 (Os07g0250900) mRNA, complete cds Length = 893 Score = 73.8 bits (37), Expect = 9e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 506 aacgccggcgtcgcggcgtacaaggagcagaacaagaccggggagttcgagctggaggtg 565 |||||||||||||| | || |||| || ||||| ||| |||| ||||||| |||||||| Sbjct: 506 aacgccggcgtcgccgagttcaagaaggagaacgcgacgggggtgttcgaggtggaggtg 565 Query: 566 gcggtcaccggcgaggt 582 ||||||||||||||||| Sbjct: 566 gcggtcaccggcgaggt 582
>dbj|AK107935.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-A06, full insert sequence Length = 893 Score = 73.8 bits (37), Expect = 9e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 506 aacgccggcgtcgcggcgtacaaggagcagaacaagaccggggagttcgagctggaggtg 565 |||||||||||||| | || |||| || ||||| ||| |||| ||||||| |||||||| Sbjct: 506 aacgccggcgtcgccgagttcaagaaggagaacgcgacgggggtgttcgaggtggaggtg 565 Query: 566 gcggtcaccggcgaggt 582 ||||||||||||||||| Sbjct: 566 gcggtcaccggcgaggt 582
>ref|XM_001228088.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_10162) mRNA, complete cds Length = 2670 Score = 48.1 bits (24), Expect = 0.053 Identities = 24/24 (100%) Strand = Plus / Plus Query: 697 cgagaaggagaagaaggacaagga 720 |||||||||||||||||||||||| Sbjct: 1254 cgagaaggagaagaaggacaagga 1277
>gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, complete sequence Length = 157629 Score = 48.1 bits (24), Expect = 0.053 Identities = 24/24 (100%) Strand = Plus / Plus Query: 698 gagaaggagaagaaggacaaggag 721 |||||||||||||||||||||||| Sbjct: 139961 gagaaggagaagaaggacaaggag 139984
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 48.1 bits (24), Expect = 0.053 Identities = 24/24 (100%) Strand = Plus / Plus Query: 698 gagaaggagaagaaggacaaggag 721 |||||||||||||||||||||||| Sbjct: 297700 gagaaggagaagaaggacaaggag 297723
>gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, complete sequence Length = 195874 Score = 48.1 bits (24), Expect = 0.053 Identities = 24/24 (100%) Strand = Plus / Minus Query: 698 gagaaggagaagaaggacaaggag 721 |||||||||||||||||||||||| Sbjct: 90374 gagaaggagaagaaggacaaggag 90351
>gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, complete sequence Length = 226189 Score = 48.1 bits (24), Expect = 0.053 Identities = 24/24 (100%) Strand = Plus / Plus Query: 698 gagaaggagaagaaggacaaggag 721 |||||||||||||||||||||||| Sbjct: 195786 gagaaggagaagaaggacaaggag 195809
>gb|AC164433.4| Mus musculus BAC clone RP23-357G5 from chromosome 14, complete sequence Length = 190748 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 699 agaaggagaagaaggacaaggag 721 ||||||||||||||||||||||| Sbjct: 40364 agaaggagaagaaggacaaggag 40342
>gb|AC068339.6| Homo sapiens chromosome 11, clone RP11-328E22, complete sequence Length = 155491 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 698 gagaaggagaagaaggacaagga 720 ||||||||||||||||||||||| Sbjct: 114174 gagaaggagaagaaggacaagga 114152
>gb|AF294797.1|AF294797 Bos taurus bovine leukemia virus receptor BLVRcp199 gene, complete cds Length = 6528 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 699 agaaggagaagaaggacaaggag 721 ||||||||||||||||||||||| Sbjct: 2262 agaaggagaagaaggacaaggag 2284
>emb|AL844545.7| Mouse DNA sequence from clone RP23-383C3 on chromosome 2, complete sequence Length = 120913 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 699 agaaggagaagaaggacaaggag 721 ||||||||||||||||||||||| Sbjct: 115860 agaaggagaagaaggacaaggag 115838
>emb|AL591712.18| Mouse DNA sequence from clone RP23-138C10 on chromosome 2, complete sequence Length = 168958 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 162 tcgccgccgtcgtcgctgtcatc 184 ||||||||||||||||||||||| Sbjct: 53143 tcgccgccgtcgtcgctgtcatc 53165
>ref|NM_001073444.1| Oryza sativa (japonica cultivar-group) Os12g0528100 (Os12g0528100) mRNA, complete cds Length = 2469 Score = 44.1 bits (22), Expect = 0.83 Identities = 25/26 (96%) Strand = Plus / Plus Query: 220 cctccagccctccatcaccgtcgagg 245 |||||||||||||||||||| ||||| Sbjct: 1737 cctccagccctccatcaccgacgagg 1762
>ref|XM_544064.2| PREDICTED: Canis familiaris similar to Dedicator of cytokinesis protein 1 (180 kDa protein downstream of CRK) (DOCK180) (LOC486934), mRNA Length = 5577 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 697 cgagaaggagaagaaggacaag 718 |||||||||||||||||||||| Sbjct: 5040 cgagaaggagaagaaggacaag 5061
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 44.1 bits (22), Expect = 0.83 Identities = 25/26 (96%) Strand = Plus / Plus Query: 220 cctccagccctccatcaccgtcgagg 245 |||||||||||||||||||| ||||| Sbjct: 20866597 cctccagccctccatcaccgacgagg 20866622
>gb|S79557.1| hyperthermophilic heat shock protein [Desulfurococcus, SY, Genomic, 1959 nt] Length = 1959 Score = 44.1 bits (22), Expect = 0.83 Identities = 28/30 (93%) Strand = Plus / Plus Query: 690 gcaagctcgagaaggagaagaaggacaagg 719 |||||||||||||||| ||| ||||||||| Sbjct: 1673 gcaagctcgagaaggacaaggaggacaagg 1702
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 699 agaaggagaagaaggacaagga 720 |||||||||||||||||||||| Sbjct: 789786 agaaggagaagaaggacaagga 789807
>emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb0046O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 101075 Score = 44.1 bits (22), Expect = 0.83 Identities = 25/26 (96%) Strand = Plus / Plus Query: 220 cctccagccctccatcaccgtcgagg 245 |||||||||||||||||||| ||||| Sbjct: 68324 cctccagccctccatcaccgacgagg 68349
>ref|NM_208998.1| Eremothecium gossypii ACR243Wp (ACR243W), mRNA Length = 642 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 699 agaaggagaagaaggacaagga 720 |||||||||||||||||||||| Sbjct: 578 agaaggagaagaaggacaagga 599
>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 107819 Score = 44.1 bits (22), Expect = 0.83 Identities = 25/26 (96%) Strand = Plus / Minus Query: 220 cctccagccctccatcaccgtcgagg 245 |||||||||||||||||||| ||||| Sbjct: 92398 cctccagccctccatcaccgacgagg 92373
>emb|AL591882.12| Mouse DNA sequence from clone RP23-53L16 on chromosome 2, complete sequence Length = 251814 Score = 44.1 bits (22), Expect = 0.83 Identities = 25/26 (96%) Strand = Plus / Minus Query: 698 gagaaggagaagaaggacaaggagtg 723 ||||||||||||||||| |||||||| Sbjct: 112131 gagaaggagaagaaggagaaggagtg 112106
>emb|BX936395.9| Zebrafish DNA sequence from clone DKEY-152H20 in linkage group 6, complete sequence Length = 133766 Score = 42.1 bits (21), Expect = 3.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 38 tcccccctccaacaccttctccgccctcc 66 ||||||||||||| ||| ||||||||||| Sbjct: 31617 tcccccctccaacccctactccgccctcc 31589
>ref|XM_001224310.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_05097) mRNA, complete cds Length = 3681 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 702 aggagaagaaggacaaggagt 722 ||||||||||||||||||||| Sbjct: 1913 aggagaagaaggacaaggagt 1933
>ref|XR_023260.1| PREDICTED: Pan troglodytes similar to DOCK180 protein (DOCK1), mRNA Length = 3062 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 698 gagaaggagaagaaggacaag 718 ||||||||||||||||||||| Sbjct: 1447 gagaaggagaagaaggacaag 1467
>ref|XM_513316.2| PREDICTED: Pan troglodytes similar to Arginine/proline rich coiled-coil 1 (LOC456751), mRNA Length = 3133 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1250 aaggagaagaaggacaaggag 1270
>gb|BC015885.1| Homo sapiens arginine/proline rich coiled-coil 1, mRNA (cDNA clone IMAGE:3909529), **** WARNING: chimeric clone **** Length = 2518 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 417 aaggagaagaaggacaaggag 437
>ref|XM_001057635.1| PREDICTED: Rattus norvegicus similar to proline arginine rich coiled coil 1, transcript variant 1 (LOC681614), mRNA Length = 2797 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1414 aaggagaagaaggacaaggag 1434
>ref|XM_001057759.1| PREDICTED: Rattus norvegicus similar to proline arginine rich coiled coil 1, transcript variant 3 (LOC681614), mRNA Length = 3284 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1399 aaggagaagaaggacaaggag 1419
>ref|XM_001057691.1| PREDICTED: Rattus norvegicus similar to proline arginine rich coiled coil 1, transcript variant 2 (LOC681614), mRNA Length = 3179 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1294 aaggagaagaaggacaaggag 1314
>ref|XM_001057873.1| PREDICTED: Rattus norvegicus similar to proline arginine rich coiled coil 1, transcript variant 5 (LOC681614), mRNA Length = 3395 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1510 aaggagaagaaggacaaggag 1530
>ref|XM_001057822.1| PREDICTED: Rattus norvegicus similar to proline arginine rich coiled coil 1, transcript variant 4 (LOC681614), mRNA Length = 3299 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1414 aaggagaagaaggacaaggag 1434
>ref|XM_001058588.1| PREDICTED: Rattus norvegicus similar to proline arginine rich coiled coil 1, transcript variant 1 (LOC681287), mRNA Length = 2893 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1510 aaggagaagaaggacaaggag 1530
>ref|XM_001058709.1| PREDICTED: Rattus norvegicus similar to proline arginine rich coiled coil 1, transcript variant 3 (LOC681287), mRNA Length = 3281 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1399 aaggagaagaaggacaaggag 1419
>ref|XM_001058646.1| PREDICTED: Rattus norvegicus similar to proline arginine rich coiled coil 1, transcript variant 2 (LOC681287), mRNA Length = 3176 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1294 aaggagaagaaggacaaggag 1314
>ref|XM_001058826.1| PREDICTED: Rattus norvegicus similar to proline arginine rich coiled coil 1, transcript variant 5 (LOC681287), mRNA Length = 3392 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1510 aaggagaagaaggacaaggag 1530
>ref|XM_001058764.1| PREDICTED: Rattus norvegicus similar to proline arginine rich coiled coil 1, transcript variant 4 (LOC681287), mRNA Length = 3296 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1414 aaggagaagaaggacaaggag 1434
>ref|XM_001090507.1| PREDICTED: Macaca mulatta dedicator of cytokinesis 1 (DOCK1), mRNA Length = 3617 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 698 gagaaggagaagaaggacaag 718 ||||||||||||||||||||| Sbjct: 1993 gagaaggagaagaaggacaag 2013
>ref|XM_001110203.1| PREDICTED: Macaca mulatta similar to proline arginine rich coiled coil 1, transcript variant 1 (LOC712899), mRNA Length = 3140 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1263 aaggagaagaaggacaaggag 1283
>ref|XM_001110283.1| PREDICTED: Macaca mulatta similar to proline arginine rich coiled coil 1, transcript variant 2 (LOC712899), mRNA Length = 3198 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1408 aaggagaagaaggacaaggag 1428
>ref|XM_001110370.1| PREDICTED: Macaca mulatta similar to proline arginine rich coiled coil 1, transcript variant 4 (LOC712899), mRNA Length = 3443 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1566 aaggagaagaaggacaaggag 1586
>ref|XM_001110324.1| PREDICTED: Macaca mulatta similar to proline arginine rich coiled coil 1, transcript variant 3 (LOC712899), mRNA Length = 3396 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1519 aaggagaagaaggacaaggag 1539
>ref|NM_001380.3| Homo sapiens dedicator of cytokinesis 1 (DOCK1), mRNA Length = 6751 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 698 gagaaggagaagaaggacaag 718 ||||||||||||||||||||| Sbjct: 5135 gagaaggagaagaaggacaag 5155
>gb|AY549199.1| Streptomyces tubercidicus non-ribosomal peptide synthetase (nrpLB1) gene, partial cds; cytochrome P450 monooxygenase CYP185A1 (cypLB) and thioesterase II (teLB) genes, complete cds; and non-ribosomal peptide synthetase (nrpLB2) gene, partial cds Length = 3671 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 565 ggcggtcaccggcgaggtgcg 585 ||||||||||||||||||||| Sbjct: 793 ggcggtcaccggcgaggtgcg 813
>ref|NM_018067.3| Homo sapiens arginine/proline rich coiled-coil 1 (RPRC1), mRNA gb|BC106053.1| Homo sapiens arginine/proline rich coiled-coil 1, mRNA (cDNA clone MGC:117315 IMAGE:6514558), complete cds Length = 3357 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1459 aaggagaagaaggacaaggag 1479
>gb|BC023774.1| Mus musculus arginine/proline rich coiled-coil 1, mRNA (cDNA clone IMAGE:5346040), with apparent retained intron Length = 3181 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1287 aaggagaagaaggacaaggag 1307
>ref|NM_144941.2| Mus musculus arginine/proline rich coiled-coil 1 (Rprc1), mRNA gb|BC023677.1| Mus musculus arginine/proline rich coiled-coil 1, mRNA (cDNA clone MGC:38577 IMAGE:5354497), complete cds Length = 3415 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1481 aaggagaagaaggacaaggag 1501
>gb|BC019977.1| Mus musculus arginine/proline rich coiled-coil 1, mRNA (cDNA clone MGC:28498 IMAGE:4187506), complete cds Length = 2376 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 482 aaggagaagaaggacaaggag 502
>ref|XM_589552.2| PREDICTED: Bos taurus similar to proline arginine rich coiled coil 1 (LOC512106), mRNA Length = 3369 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1498 aaggagaagaaggacaaggag 1518
>gb|AC144808.2| Mus musculus BAC clone RP24-434O1 from chromosome 5, complete sequence Length = 152463 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 141843 aaggagaagaaggacaaggag 141863
>gb|AC140233.3| Mus musculus BAC clone RP23-282N19 from chromosome 19, complete sequence Length = 195305 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 778 attgtactgtatggttttcat 798 ||||||||||||||||||||| Sbjct: 124161 attgtactgtatggttttcat 124181
>ref|XM_845539.1| PREDICTED: Canis familiaris similar to proline arginine rich coiled coil 1 (LOC608497), mRNA Length = 3483 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1609 aaggagaagaaggacaaggag 1629
>gb|AC114484.2| Homo sapiens chromosome 1 clone RP4-615B18, complete sequence Length = 118763 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 51891 aaggagaagaaggacaaggag 51871
>dbj|AK096341.1| Homo sapiens cDNA FLJ39022 fis, clone NT2RP7003724, weakly similar to H.sapiens E-MAP-115 mRNA Length = 3236 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1367 aaggagaagaaggacaaggag 1387
>gb|BC082266.1| Homo sapiens arginine/proline rich coiled-coil 1, mRNA (cDNA clone IMAGE:6578709) Length = 2022 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 121 aaggagaagaaggacaaggag 141
>gb|BC067256.1| Homo sapiens arginine/proline rich coiled-coil 1, mRNA (cDNA clone IMAGE:6526363), partial cds Length = 2642 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 758 aaggagaagaaggacaaggag 778
>gb|AC108484.25| Mus musculus strain 129/Sv clone ct7-293m19 map 19, complete sequence Length = 170321 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 778 attgtactgtatggttttcat 798 ||||||||||||||||||||| Sbjct: 133952 attgtactgtatggttttcat 133972
>gb|BC057293.1| Homo sapiens arginine/proline rich coiled-coil 1, mRNA (cDNA clone IMAGE:5287823) Length = 3272 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1387 aaggagaagaaggacaaggag 1407
>ref|NM_075054.2| Caenorhabditis elegans Y6G8.2 (Y6G8.2) mRNA, complete cds Length = 2970 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 801 aaaattccaagcggtctatga 821 ||||||||||||||||||||| Sbjct: 511 aaaattccaagcggtctatga 491
>emb|Z92973.1|CEY6G8 Caenorhabditis elegans YAC Y6G8, complete sequence Length = 33038 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 801 aaaattccaagcggtctatga 821 ||||||||||||||||||||| Sbjct: 9084 aaaattccaagcggtctatga 9104
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 3.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 172 cgtcgctgtcatcatcattgccgtcatggttgccgcc 208 |||||| | ||||||||||||||| |||| ||||||| Sbjct: 31191635 cgtcgccgccatcatcattgccgtaatggctgccgcc 31191599
>emb|AL450467.8| Human DNA sequence from clone RP11-320E16 on chromosome 9 Contains the 5' end of a novel gene (FLJ35024), the VLDLR gene for very low density lipoprotein receptor and a CpG island, complete sequence Length = 74961 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 698 gagaaggagaagaaggacaag 718 ||||||||||||||||||||| Sbjct: 5089 gagaaggagaagaaggacaag 5109
>emb|AL355316.12| Human DNA sequence from clone RP11-82L9 on chromosome 10 Contains the 3' end of the DOCK1 gene for dedicator of cyto-kinesis 1, complete sequence Length = 142638 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 698 gagaaggagaagaaggacaag 718 ||||||||||||||||||||| Sbjct: 2295 gagaaggagaagaaggacaag 2315
>gb|AC153362.4| Mus musculus BAC clone RP23-92N20 from chromosome 10, complete sequence Length = 214898 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 cgtcgtcgctgtcatcatcat 189 ||||||||||||||||||||| Sbjct: 187192 cgtcgtcgctgtcatcatcat 187172
>emb|BX032083.1|CNS08WX3 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA47DB08 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 844 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 cgtcgtcgctgtcatcatcat 189 ||||||||||||||||||||| Sbjct: 42 cgtcgtcgctgtcatcatcat 62
>emb|BX032082.1|CNS08WX2 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA47DB08 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 807 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 cgtcgtcgctgtcatcatcat 189 ||||||||||||||||||||| Sbjct: 700 cgtcgtcgctgtcatcatcat 680
>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0014K08 Length = 177263 Score = 42.1 bits (21), Expect = 3.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 172 cgtcgctgtcatcatcattgccgtcatggttgccgcc 208 |||||| | ||||||||||||||| |||| ||||||| Sbjct: 117980 cgtcgccgccatcatcattgccgtaatggctgccgcc 117944
>gb|AC154797.2| Mus musculus BAC clone RP24-494B10 from chromosome 17, complete sequence Length = 140053 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 698 gagaaggagaagaaggacaaggagt 722 ||||||||||||||||| ||||||| Sbjct: 63752 gagaaggagaagaaggagaaggagt 63776
>gb|AF218002.1|AF218002 Homo sapiens clone PP2464 unknown mRNA Length = 2811 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 922 aaggagaagaaggacaaggag 942
>dbj|AK122462.1| Mus musculus mRNA for mKIAA1187 protein Length = 5090 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1392 aaggagaagaaggacaaggag 1412
>ref|XM_959425.1| Neurospora crassa OR74A hypothetical protein (NCU02159.1) partial mRNA Length = 1110 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 699 agaaggagaagaaggacaagg 719 ||||||||||||||||||||| Sbjct: 245 agaaggagaagaaggacaagg 265
>emb|AL732624.6| Mouse DNA sequence from clone RP23-118D1 on chromosome 4, complete sequence Length = 110038 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 61719 aaggagaagaaggacaaggag 61699
>emb|BX648342.1|HSM808490 Homo sapiens mRNA; cDNA DKFZp686I17170 (from clone DKFZp686I17170) Length = 4952 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 698 gagaaggagaagaaggacaag 718 ||||||||||||||||||||| Sbjct: 3268 gagaaggagaagaaggacaag 3288
>ref|XM_308400.2| Anopheles gambiae str. PEST ENSANGP00000019080 (ENSANGG00000016591), partial mRNA Length = 747 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 cgtcgtcgctgtcatcatcat 189 ||||||||||||||||||||| Sbjct: 724 cgtcgtcgctgtcatcatcat 704
>gb|AC174722.2| Mus musculus chromosome 5, clone wi1-1220K19, complete sequence Length = 33943 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 15093 aaggagaagaaggacaaggag 15113
>gb|AC174769.1| Gasterosteus aculeatus clone VMRC28-49K14, complete sequence Length = 135249 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 592 gctgcagctgaagaagaacaagctg 616 |||||||| |||||||||||||||| Sbjct: 25802 gctgcagcagaagaagaacaagctg 25826
>emb|AL929413.13| Mouse DNA sequence from clone RP24-215D6 on chromosome 4, complete sequence Length = 117742 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 698 gagaaggagaagaaggacaaggagt 722 ||||||||||||||||| ||||||| Sbjct: 25884 gagaaggagaagaaggagaaggagt 25908
>emb|AL611923.19| Mouse DNA sequence from clone RP23-441A11 on chromosome 4, complete sequence Length = 63404 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 17028 aaggagaagaaggacaaggag 17008
>gb|AC142105.7| Mus musculus BAC clone RP24-240E7 from chromosome 10, complete sequence Length = 163869 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 cgtcgtcgctgtcatcatcat 189 ||||||||||||||||||||| Sbjct: 31346 cgtcgtcgctgtcatcatcat 31326
>dbj|D50857.1|HUMDOCK180 Human DOCK180 protein mRNA, complete cds Length = 6519 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 698 gagaaggagaagaaggacaag 718 ||||||||||||||||||||| Sbjct: 5094 gagaaggagaagaaggacaag 5114
>dbj|AB033013.2| Homo sapiens mRNA for KIAA1187 protein, partial cds Length = 3454 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 701 aaggagaagaaggacaaggag 721 ||||||||||||||||||||| Sbjct: 1585 aaggagaagaaggacaaggag 1605 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 127,040,304 Number of extensions: 7134834 Number of successful extensions: 178201 Number of sequences better than 10.0: 84 Number of HSP's gapped: 178201 Number of HSP's successfully gapped: 98 Length of query: 867 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 845 Effective length of database: 18,508,616,841 Effective search space: 15639781230645 Effective search space used: 15639781230645 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)