ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf84m10 |
|---|---|
| Clone Library Name | barley_pub |
>Q99P72:RTN4_MOUSE Reticulon-4 - Mus musculus (Mouse)| Length = 1162 Score = 47.0 bits (110), Expect = 2e-04 Identities = 35/117 (29%), Positives = 58/117 (49%) Frame = +1 Query: 682 EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLT 861 EV I E+L + S +N + LR + DL L +WV + +G+ N LT Sbjct: 1050 EVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLT 1109 Query: 862 LSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIPKGALKNK 1032 L + + L+++PV+YE++ ++D + A +K A K+ +KIP LK K Sbjct: 1110 LLILALISLFSIPVIYERHQAQIDHYLGLANKSVKDAMA----KIQAKIP--GLKRK 1160
>Q9JK11:RTN4_RAT Reticulon-4 - Rattus norvegicus (Rat)| Length = 1163 Score = 46.6 bits (109), Expect = 2e-04 Identities = 35/117 (29%), Positives = 58/117 (49%) Frame = +1 Query: 682 EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLT 861 EV I E+L + S +N + LR + DL L +WV + +G+ N LT Sbjct: 1051 EVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLT 1110 Query: 862 LSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIPKGALKNK 1032 L + + L+++PV+YE++ ++D + A +K A K+ +KIP LK K Sbjct: 1111 LLILALISLFSIPVIYERHQVQIDHYLGLANKSVKDAMA----KIQAKIP--GLKRK 1161
>Q9NQC3:RTN4_HUMAN Reticulon-4 - Homo sapiens (Human)| Length = 1192 Score = 46.6 bits (109), Expect = 2e-04 Identities = 36/117 (30%), Positives = 58/117 (49%) Frame = +1 Query: 682 EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLT 861 EV I E+L + S +N + LR + DL L +WV + +G+ N LT Sbjct: 1080 EVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLT 1139 Query: 862 LSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIPKGALKNK 1032 L + + L++VPV+YE++ ++D + A +K A K+ +KIP LK K Sbjct: 1140 LLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMA----KIQAKIP--GLKRK 1190
>Q68EW1:RTN3B_XENLA Reticulon-3-B - Xenopus laevis (African clawed frog)| Length = 214 Score = 45.4 bits (106), Expect = 4e-04 Identities = 30/106 (28%), Positives = 58/106 (54%) Frame = +1 Query: 715 IALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYT 894 ++ SL H +N L ++ + DL L + +W+++ +G+ N +TL + ++ +T Sbjct: 113 LSSSLAH-VNHALKSIVRLFLVEDLVDSLKLALLMWLMTYIGAVFNGITLLILGVLLAFT 171 Query: 895 VPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIPKGALKNK 1032 P++YEKY ++D + ++K EK+ +K+P GALK K Sbjct: 172 TPLVYEKYKVQIDHYVSLVHSQVKS----ITEKIQAKLP-GALKKK 212
>Q28D16:RTN3_XENTR Reticulon-3 - Xenopus tropicalis (Western clawed frog) (Silurana| tropicalis) Length = 213 Score = 44.3 bits (103), Expect = 0.001 Identities = 30/106 (28%), Positives = 56/106 (52%) Frame = +1 Query: 715 IALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYT 894 ++ SL H +N L + + DL L + +W+++ +G+ N +TL + ++ +T Sbjct: 112 LSTSLAH-VNHALKYIVRLFLVEDLVDSLKLALLMWLMTYVGAVFNGITLLILGVLLAFT 170 Query: 895 VPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIPKGALKNK 1032 P++YEKY ++D + +K EK+ +K+P GALK K Sbjct: 171 APIVYEKYKVQIDHYVSLVHSHVKS----ITEKIQAKLP-GALKKK 211
>Q5RBL9:RTN3_PONPY Reticulon-3 - Pongo pygmaeus (Orangutan)| Length = 236 Score = 44.3 bits (103), Expect = 0.001 Identities = 28/98 (28%), Positives = 53/98 (54%) Frame = +1 Query: 739 INRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKY 918 INR L + + DL L + +W+++ +G+ N +TL + +++++VP++YEKY Sbjct: 142 INRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKY 201 Query: 919 DDKVDAFGEKAMIELKKYYAIFEEKVLSKIPKGALKNK 1032 ++D + A + K EK+ +K+P G K K Sbjct: 202 KTQIDHYVGIARDQTKS----IVEKIQAKLP-GIAKKK 234
>O95197:RTN3_HUMAN Reticulon-3 - Homo sapiens (Human)| Length = 1032 Score = 44.3 bits (103), Expect = 0.001 Identities = 28/98 (28%), Positives = 53/98 (54%) Frame = +1 Query: 739 INRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKY 918 INR L + + DL L + +W+++ +G+ N +TL + +++++VP++YEKY Sbjct: 938 INRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKY 997 Query: 919 DDKVDAFGEKAMIELKKYYAIFEEKVLSKIPKGALKNK 1032 ++D + A + K EK+ +K+P G K K Sbjct: 998 KTQIDHYVGIARDQTKS----IVEKIQAKLP-GIAKKK 1030
>Q5J6M8:RTN3A_XENLA Reticulon-3-A - Xenopus laevis (African clawed frog)| Length = 214 Score = 43.9 bits (102), Expect = 0.001 Identities = 22/72 (30%), Positives = 43/72 (59%) Frame = +1 Query: 817 LWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKV 996 +W+++ +G+ N +TL + ++ +T P++YEKY ++D + ++K EK+ Sbjct: 146 MWLMTYVGAVFNGITLLILGVLLTFTAPIVYEKYKVQIDHYVSLVHSQVKS----ITEKI 201 Query: 997 LSKIPKGALKNK 1032 +K+P GALK K Sbjct: 202 QAKLP-GALKKK 212
>Q08D83:RTN3_BOVIN Reticulon-3 - Bos taurus (Bovine)| Length = 256 Score = 43.5 bits (101), Expect = 0.002 Identities = 27/98 (27%), Positives = 53/98 (54%) Frame = +1 Query: 739 INRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKY 918 INR L + + DL L + +W+++ +G+ N +TL + ++++++P++YEKY Sbjct: 162 INRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSIPIVYEKY 221 Query: 919 DDKVDAFGEKAMIELKKYYAIFEEKVLSKIPKGALKNK 1032 ++D + A + K EK+ +K+P G K K Sbjct: 222 KTQIDHYVGIARDQTKS----IVEKIQAKLP-GIAKKK 254
>Q6RJR6:RTN3_RAT Reticulon-3 - Rattus norvegicus (Rat)| Length = 940 Score = 42.4 bits (98), Expect = 0.004 Identities = 26/98 (26%), Positives = 53/98 (54%) Frame = +1 Query: 739 INRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKY 918 +N+ L + + DL L + +W+++ +G+ N +TL + +++++VP++YEKY Sbjct: 846 VNKALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEKY 905 Query: 919 DDKVDAFGEKAMIELKKYYAIFEEKVLSKIPKGALKNK 1032 ++D + A + K EK+ +K+P G K K Sbjct: 906 KTQIDHYVGIARDQTKS----IVEKIQAKLP-GIAKKK 938
>Q9ES97:RTN3_MOUSE Reticulon-3 - Mus musculus (Mouse)| Length = 964 Score = 42.4 bits (98), Expect = 0.004 Identities = 26/98 (26%), Positives = 53/98 (54%) Frame = +1 Query: 739 INRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKY 918 +N+ L + + DL L + +W+++ +G+ N +TL + +++++VP++YEKY Sbjct: 870 VNKALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEKY 929 Query: 919 DDKVDAFGEKAMIELKKYYAIFEEKVLSKIPKGALKNK 1032 ++D + A + K EK+ +K+P G K K Sbjct: 930 KTQIDHYVGIARDQTKS----IVEKIQAKLP-GIAKKK 962
>Q5IS59:RTN1_PANTR Reticulon-1 - Pan troglodytes (Chimpanzee)| Length = 776 Score = 40.4 bits (93), Expect = 0.014 Identities = 28/110 (25%), Positives = 53/110 (48%) Frame = +1 Query: 682 EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLT 861 E+ + ++ L+ +N L LR + +DL L +W+L+ +G+ N LT Sbjct: 664 EITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 723 Query: 862 LSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIP 1011 L + V ++T+PV+Y K+ ++D + + A K+ +KIP Sbjct: 724 LLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVA----KIQAKIP 769
>Q16799:RTN1_HUMAN Reticulon-1 - Homo sapiens (Human)| Length = 776 Score = 40.4 bits (93), Expect = 0.014 Identities = 28/110 (25%), Positives = 53/110 (48%) Frame = +1 Query: 682 EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLT 861 E+ + ++ L+ +N L LR + +DL L +W+L+ +G+ N LT Sbjct: 664 EITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 723 Query: 862 LSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIP 1011 L + V ++T+PV+Y K+ ++D + + A K+ +KIP Sbjct: 724 LLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVA----KIQAKIP 769
>Q64548:RTN1_RAT Reticulon-1 - Rattus norvegicus (Rat)| Length = 777 Score = 40.0 bits (92), Expect = 0.019 Identities = 29/110 (26%), Positives = 53/110 (48%) Frame = +1 Query: 682 EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLT 861 E+ + ++ L+ +N L LR + +DL L +W+L+ +G+ N LT Sbjct: 665 EITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 724 Query: 862 LSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIP 1011 L + V ++T+PV+Y K+ +VD + + A K+ +KIP Sbjct: 725 LLLMAVVSMFTLPVVYVKHQAQVDQYLGLVRTHINTVVA----KIQAKIP 770
>Q8K0T0:RTN1_MOUSE Reticulon-1 - Mus musculus (Mouse)| Length = 780 Score = 40.0 bits (92), Expect = 0.019 Identities = 29/110 (26%), Positives = 53/110 (48%) Frame = +1 Query: 682 EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLT 861 E+ + ++ L+ +N L LR + +DL L +W+L+ +G+ N LT Sbjct: 668 EITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 727 Query: 862 LSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIP 1011 L + V ++T+PV+Y K+ +VD + + A K+ +KIP Sbjct: 728 LLLMAVVSMFTLPVVYVKHQAQVDQYLGLVRTHINTVVA----KIQAKIP 773
>O70622:RTN2_MOUSE Reticulon-2 - Mus musculus (Mouse)| Length = 471 Score = 35.4 bits (80), Expect = 0.46 Identities = 20/64 (31%), Positives = 36/64 (56%) Frame = +1 Query: 820 WVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVL 999 ++L+ +G+ N LTL + V L+TVP+LY ++ ++D + +L A K+ Sbjct: 393 YILTFVGAIFNGLTLVILGVVALFTVPLLYRQHQAQIDQYVGLVTNQLSHIKA----KIR 448 Query: 1000 SKIP 1011 +KIP Sbjct: 449 AKIP 452
>O75298:RTN2_HUMAN Reticulon-2 - Homo sapiens (Human)| Length = 545 Score = 33.9 bits (76), Expect = 1.3 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = +1 Query: 820 WVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVL 999 ++L+ +G+ N LTL + + L+T+P+LY ++ ++D + +L A K+ Sbjct: 466 YILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQYVGLVTNQLSHIKA----KIR 521 Query: 1000 SKIP-KGAL 1023 +KIP GAL Sbjct: 522 AKIPGTGAL 530
>Q5URB5:YL185_MIMIV Uncharacterized protein L185 - Mimivirus| Length = 392 Score = 32.7 bits (73), Expect = 3.0 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = -2 Query: 1008 DLRQDLLFKDGIILLQLDHGLLTKSINLVIILLIQNWDSVQH 883 D DL+F + +ILL ++G +I++V ILL DS+QH Sbjct: 147 DTNNDLIFNNDLILLIFEYGFFEDTIDVVKILL----DSIQH 184
>Q58189:Y779_METJA Uncharacterized protein MJ0779 - Methanococcus jannaschii| Length = 299 Score = 32.0 bits (71), Expect = 5.0 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Frame = +1 Query: 730 RHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTL-SYIVFVVLYTVPVL 906 + I R + +++G D KKF++++ + + +L S LTL S I+FVV+Y L Sbjct: 10 KRTIKRNIILFKKLGKDFDEKKFILLLIIIAAIPLLISYYLHLTLKSMIIFVVIYVGAAL 69 Query: 907 YEK---YDDKVD 933 + Y++K++ Sbjct: 70 FIPSILYENKIE 81
>Q9Z179:SHCBP_MOUSE SHC SH2 domain-binding protein 1 - Mus musculus (Mouse)| Length = 668 Score = 32.0 bits (71), Expect = 5.0 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%) Frame = +1 Query: 709 VNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNF----LTLSYIV 876 V +A +E FTL + DLK+F + + LWV+S F L + ++ Sbjct: 142 VRLAEPCIYESKLSTFTLANVKELLDLKEFHLPLQELWVVS--DDSHEFHQMALAIEHVR 199 Query: 877 FVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLS 1002 F + E+ +D+ D F L+ YY I E++V S Sbjct: 200 FFYKHIWRSWDEEEEDEYDYFVRCVEPRLRLYYDILEDRVPS 241 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 158,265,293 Number of extensions: 3111221 Number of successful extensions: 9204 Number of sequences better than 10.0: 20 Number of HSP's gapped: 9199 Number of HSP's successfully gapped: 20 Length of query: 389 Length of database: 100,686,439 Length adjustment: 115 Effective length of query: 274 Effective length of database: 69,142,514 Effective search space: 18945048836 Effective search space used: 18945048836 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
