ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf84m02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P82281:APX4_ARATH Putative L-ascorbate peroxidase 4, chloroplast... 30 2.9
2P13869:CB12_PETHY Chlorophyll a-b binding protein, chloroplast p... 30 4.9
3Q96HN2:SAHH3_HUMAN Putative adenosylhomocysteinase 3 - Homo sapi... 29 6.4
4Q24629:REF2P_DROSI Protein ref(2)P - Drosophila simulans (Fruit ... 29 8.3
5P08768:POLS_EEEV Structural polyprotein - Eastern equine encepha... 29 8.3
6O31073:MTS1_STRAH Modification methylase SacI - Streptomyces ach... 29 8.3

>P82281:APX4_ARATH Putative L-ascorbate peroxidase 4, chloroplast precursor -|
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 349
 Score = 30.4 bits (67), Expect = 2.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 258 GPDRRRADQKAKPPPWIAPFINRYQRTDDT 169
           GPD+   +Q     P +AP++ +YQR+ +T
Sbjct: 277 GPDQAATEQLLATDPQVAPWVQKYQRSRET 306



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>P13869:CB12_PETHY Chlorophyll a-b binding protein, chloroplast precursor - Petunia|
           hybrida (Petunia)
          Length = 270

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
 Frame = +1

Query: 124 LIGPWSAPMCALSCVRVVRPLVPVYKRS--------DPRRRFRFLVSSPPVWARREIRGG 279
           ++G   A       +RV + + PV  RS        DP R   F  S+PP W    + G 
Sbjct: 26  IVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGD 85

Query: 280 C*SVMGTRLLPLGRTPNQIKSN-QKQIMHA 366
                G   L LG  P  +K N Q +++H+
Sbjct: 86  ----FGFDPLGLGSDPESLKWNAQAELVHS 111



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>Q96HN2:SAHH3_HUMAN Putative adenosylhomocysteinase 3 - Homo sapiens (Human)|
          Length = 611

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 118 PPLIGPWSAPMCALSCVRVVRPLVPVYKRSDPRRR 222
           PP+ GP S P  ALS      P     KRSDP  +
Sbjct: 60  PPVPGPGSGPAAALSPAAGKVPQASAMKRSDPHHQ 94



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>Q24629:REF2P_DROSI Protein ref(2)P - Drosophila simulans (Fruit fly)|
          Length = 599

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 282 TTTANLPAGPDRRRADQKAKPPPWIAPFINRYQRTD 175
           TTTA  PA P + +A ++ + PP   P +   + T+
Sbjct: 244 TTTATAPAEPQKPKAAEQTESPPQAEPTVTAEKATE 279



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>P08768:POLS_EEEV Structural polyprotein - Eastern equine encephalitis virus (EEEV)|
           (Eastern equine encephalomyelitis virus)
          Length = 1239

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 321 PAKRKKTSPHHRLTTTANLPAGPDRRRADQKAKPPP 214
           PAKRKK +P   L T    P  P ++   QK KP P
Sbjct: 64  PAKRKKPAPSLSLETKKKRPPPPAKK---QKRKPKP 96



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>O31073:MTS1_STRAH Modification methylase SacI - Streptomyces achromogenes|
          Length = 390

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 267 LPAGPDRRRADQKAKPPPWIAPF 199
           L A PDR     +A+P PW+ PF
Sbjct: 281 LKADPDRPSTTLQAQPGPWVGPF 303


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 74,788,624
Number of extensions: 1539921
Number of successful extensions: 3625
Number of sequences better than 10.0: 6
Number of HSP's gapped: 3625
Number of HSP's successfully gapped: 6
Length of query: 155
Length of database: 100,686,439
Length adjustment: 104
Effective length of query: 51
Effective length of database: 72,159,759
Effective search space: 3680147709
Effective search space used: 3680147709
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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