Clone Information

BLAST Search Result

Clone Name	FLbaf84c24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AK099360:Os01g0102700	229	4e-66
2	AK099081:Os01g0102700	229	4e-66
3	AK063774:Os01g0102700	229	4e-66
4	AK103317:Os05g0103100	198	6e-54
5	AK067538:Os05g0585400	30	3.4

>AK099360:Os01g0102700 |
          Length = 205
 Score =  229 bits (584), Expect(2) = 4e-66
 Identities = 113/128 (88%), Positives = 120/128 (93%)
 Frame = +3

Query: 114 PFLVAHKKVALSRPKPGVERLAVSLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVSKT 293
           PFLVAHKKV+LSRPKPGVERLAVSLDLYNQGSATAYDV+INDD+WPKEAFELVSGE+SKT
Sbjct: 24  PFLVAHKKVSLSRPKPGVERLAVSLDLYNQGSATAYDVSINDDTWPKEAFELVSGEMSKT 83

Query: 294 LERLEPGATASHAFVLESKTQGRFQASPAVIKYRVATKAALQEAYSTPIPALDILAERPP 473
           LERL+PG TASHAFVLE+K QGRFQ SPAVI YRV TKAALQEAYSTPI ALD+LAERPP
Sbjct: 84  LERLDPGVTASHAFVLETKVQGRFQGSPAVITYRVPTKAALQEAYSTPILALDVLAERPP 143

Query: 474 VKKFEWAK 497
            KKFEW K
Sbjct: 144 EKKFEWVK 151



 Score = 41.2 bits (95), Expect(2) = 4e-66
 Identities = 23/52 (44%), Positives = 33/52 (63%)
 Frame = +2

Query: 497 ETCCEVRSTGVCRFLRSGLHLPGREPIEIFWLKVWQEEALIYLSIIHGSPFL 652
           + C EVR  GV  +L   ++LPG +P++I   K  QEEALIYL  I+ + F+
Sbjct: 151 KACGEVRVAGVRCWLGWSVYLPGCKPVKIQRCKSKQEEALIYLPTIYKAVFV 202

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>AK099081:Os01g0102700 |
          Length = 205

 Score =  229 bits (584), Expect(2) = 4e-66
 Identities = 113/128 (88%), Positives = 120/128 (93%)
 Frame = +3

Query: 114 PFLVAHKKVALSRPKPGVERLAVSLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVSKT 293
           PFLVAHKKV+LSRPKPGVERLAVSLDLYNQGSATAYDV+INDD+WPKEAFELVSGE+SKT
Sbjct: 24  PFLVAHKKVSLSRPKPGVERLAVSLDLYNQGSATAYDVSINDDTWPKEAFELVSGEMSKT 83

Query: 294 LERLEPGATASHAFVLESKTQGRFQASPAVIKYRVATKAALQEAYSTPIPALDILAERPP 473
           LERL+PG TASHAFVLE+K QGRFQ SPAVI YRV TKAALQEAYSTPI ALD+LAERPP
Sbjct: 84  LERLDPGVTASHAFVLETKVQGRFQGSPAVITYRVPTKAALQEAYSTPILALDVLAERPP 143

Query: 474 VKKFEWAK 497
            KKFEW K
Sbjct: 144 EKKFEWVK 151



 Score = 41.2 bits (95), Expect(2) = 4e-66
 Identities = 23/52 (44%), Positives = 33/52 (63%)
 Frame = +2

Query: 497 ETCCEVRSTGVCRFLRSGLHLPGREPIEIFWLKVWQEEALIYLSIIHGSPFL 652
           + C EVR  GV  +L   ++LPG +P++I   K  QEEALIYL  I+ + F+
Sbjct: 151 KACGEVRVAGVRCWLGWSVYLPGCKPVKIQRCKSKQEEALIYLPTIYKAVFV 202

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>AK063774:Os01g0102700 |
          Length = 205

 Score =  229 bits (584), Expect(2) = 4e-66
 Identities = 113/128 (88%), Positives = 120/128 (93%)
 Frame = +3

Query: 114 PFLVAHKKVALSRPKPGVERLAVSLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVSKT 293
           PFLVAHKKV+LSRPKPGVERLAVSLDLYNQGSATAYDV+INDD+WPKEAFELVSGE+SKT
Sbjct: 24  PFLVAHKKVSLSRPKPGVERLAVSLDLYNQGSATAYDVSINDDTWPKEAFELVSGEMSKT 83

Query: 294 LERLEPGATASHAFVLESKTQGRFQASPAVIKYRVATKAALQEAYSTPIPALDILAERPP 473
           LERL+PG TASHAFVLE+K QGRFQ SPAVI YRV TKAALQEAYSTPI ALD+LAERPP
Sbjct: 84  LERLDPGVTASHAFVLETKVQGRFQGSPAVITYRVPTKAALQEAYSTPILALDVLAERPP 143

Query: 474 VKKFEWAK 497
            KKFEW K
Sbjct: 144 EKKFEWVK 151



 Score = 41.2 bits (95), Expect(2) = 4e-66
 Identities = 23/52 (44%), Positives = 33/52 (63%)
 Frame = +2

Query: 497 ETCCEVRSTGVCRFLRSGLHLPGREPIEIFWLKVWQEEALIYLSIIHGSPFL 652
           + C EVR  GV  +L   ++LPG +P++I   K  QEEALIYL  I+ + F+
Sbjct: 151 KACGEVRVAGVRCWLGWSVYLPGCKPVKIQRCKSKQEEALIYLPTIYKAVFV 202

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>AK103317:Os05g0103100 |
          Length = 225

 Score =  198 bits (503), Expect(2) = 6e-54
 Identities = 96/128 (75%), Positives = 113/128 (88%)
 Frame = +3

Query: 114 PFLVAHKKVALSRPKPGVERLAVSLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVSKT 293
           PF+VA KKVALSRP PGVERLAV+L+LYNQGSATAYDV++NDDSWP+EAF+L+SG  SK 
Sbjct: 28  PFVVAQKKVALSRPGPGVERLAVTLNLYNQGSATAYDVSLNDDSWPQEAFQLISGTTSKI 87

Query: 294 LERLEPGATASHAFVLESKTQGRFQASPAVIKYRVATKAALQEAYSTPIPALDILAERPP 473
           +E+L+PGATASH F+LE+K QG+FQ SPA+I YRV TKAALQEAYSTP+  LDILAERPP
Sbjct: 88  VEKLDPGATASHNFILETKVQGKFQGSPAIITYRVPTKAALQEAYSTPMFPLDILAERPP 147

Query: 474 VKKFEWAK 497
            +KFE  K
Sbjct: 148 QQKFELVK 155



 Score = 31.6 bits (70), Expect(2) = 6e-54
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +2

Query: 497 ETCCEVRSTGVCRFLRSGLHLPGREPIEIFWLKVWQEEAL 616
           +TC E+   G+  FL   ++LPG +P++I   K  QEEAL
Sbjct: 155 KTCGEIWVAGLRCFLCRCVYLPGCKPVKIHCCKRKQEEAL 194

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>AK067538:Os05g0585400 |
          Length = 302

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 226 WPLMTTLGPRKHLNLSLERSQRLWKGLNLVPLLRTRLYWRAKHREGSKLHLLSSSTVL 399
           W  +  +GP      S+ERS+   K L  +  LR +LY  +++ E S LH      VL
Sbjct: 13  WAGVAGVGPTTVDEASMERSKSFVKALQELKNLRPQLYSASEYCEKSYLHSEQKQMVL 70


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 26,088,932
Number of extensions: 567630
Number of successful extensions: 1567
Number of sequences better than 10.0: 5
Number of HSP's gapped: 1567
Number of HSP's successfully gapped: 9
Length of query: 329
Length of database: 15,399,855
Length adjustment: 101
Effective length of query: 228
Effective length of database: 11,355,714
Effective search space: 2589102792
Effective search space used: 2589102792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result