>LOC_Os03g24580:12003.t02152:unspliced-genomic endoplasmic reticulum protein, putative, expressed|
Length = 3499
Score = 100 bits (214), Expect(8) = 3e-76
Identities = 42/56 (75%), Positives = 44/56 (78%)
Frame = +1 / +1
Query: 238 AWKGQKAWEVAQAPFKNLXXXXXXXXXAGSTVHLFSIGIVFSALWQPFNALRSVGK 405
+W GQKAWEVAQAPFKNL AGSTVHLFSIGI FSALWQP +ALRSVGK
Sbjct: 667 SWCGQKAWEVAQAPFKNLMMMGFMMWMAGSTVHLFSIGITFSALWQPISALRSVGK 834
Score = 78.5 bits (165), Expect(8) = 3e-76
Identities = 31/35 (88%), Positives = 34/35 (97%)
Frame = +1 / +3
Query: 406 VFEPFKDPRVDTLAPKLLFTALNLAAMGLGVWKLN 510
VFEPFKDPRVDTLAPKL+F ALNLAAMGLGVWK++
Sbjct: 1713 VFEPFKDPRVDTLAPKLVFIALNLAAMGLGVWKVS 1817
Score = 61.6 bits (128), Expect(8) = 3e-76
Identities = 25/39 (64%), Positives = 29/39 (74%)
Frame = +3 / +2
Query: 39 EPVDPSVAAAAGDGEGQGSRPTLGSGAPRRIFLLLLACL 155
+P P+ + AAGDGEGQG RP LG GAPRR+ LLLL L
Sbjct: 110 DPSSPASSPAAGDGEGQGPRPPLGGGAPRRLLLLLLPLL 226
Score = 50.6 bits (104), Expect(8) = 3e-76
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = +1 / +3
Query: 502 KLNTLGLLPTNASDWVSSLSPAR 570
+LNTLGLLPTNASDWV SL+PAR
Sbjct: 1890 QLNTLGLLPTNASDWVFSLAPAR 1958
Score = 39.6 bits (80), Expect(8) = 3e-76
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3 / +1
Query: 567 SGG*ICWWRDPLDVMPL 617
+GG*ICWWRDPL + PL
Sbjct: 3043 AGG*ICWWRDPLALKPL 3093
Score = 38.2 bits (77), Expect(8) = 3e-76
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +1 / +2
Query: 196 DDAASARQRKETEAAWKGQ 252
DDAA ARQRK++E AWK Q
Sbjct: 377 DDAAGARQRKDSETAWKAQ 433
Score = 35.4 bits (71), Expect(8) = 3e-76
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +3
Query: 151 AFPDPPGFTRSAPEA 195
+ PDPPGFTRSAP+A
Sbjct: 225 SIPDPPGFTRSAPDA 269
Score = 28.1 bits (55), Expect(8) = 3e-76
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1 / +3
Query: 640 LWLYYLEDGICTKVK 684
L Y+LEDG+CTK K
Sbjct: 3114 LKFYHLEDGVCTKRK 3158
Score = 87.2 bits (184), Expect(7) = 2e-56
Identities = 36/52 (69%), Positives = 37/52 (71%)
Frame = -1 / -3
Query: 401 PTDRSALKGCQRAEKTIPMLNRWTVLPAXXXXXXXXIRFLKGACATSQAFCP 246
PT+R AL GC RAE IPMLNRWTVLPA IRFL GACATS AFCP
Sbjct: 830 PTERRALMGCHRAENVIPMLNRWTVLPAIHIMKPIIIRFLNGACATSHAFCP 675
Score = 71.6 bits (150), Expect(7) = 2e-56
Identities = 30/35 (85%), Positives = 33/35 (94%)
Frame = -1 / -1
Query: 509 LSFQTPKPIAAKLRAVKSNLGASVSTLGSLNGSKT 405
L+F TPKPIAAKLRA+K+NLGA VSTLGSLNGSKT
Sbjct: 1816 LTFHTPKPIAAKLRAIKTNLGARVSTLGSLNGSKT 1712
Score = 53.8 bits (111), Expect(7) = 2e-56
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = -1 / -1
Query: 131 DTSWSSTAQRRARPLPFSIAGGR 63
+ SWSSTAQRRARPLPFSIAGGR
Sbjct: 202 EASWSSTAQRRARPLPFSIAGGR 134
Score = 48.3 bits (99), Expect(7) = 2e-56
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = -1 / -1
Query: 572 SRAGDSEDTQSDAFVGRRPNVLS 504
+RAG SE+TQSDAFVGRRPNVLS
Sbjct: 1960 TRAGASENTQSDAFVGRRPNVLS 1892
Score = 36.3 bits (73), Expect(7) = 2e-56
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = -2 / -3
Query: 616 RGITSRGSLHQHIQPP 569
+G ++RGSLHQHIQPP
Sbjct: 3092 KGFSARGSLHQHIQPP 3045
Score = 24.9 bits (48), Expect(7) = 2e-56
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1 / -1
Query: 182 DLVKPGGSG 156
DLVKPGGSG
Sbjct: 256 DLVKPGGSG 230
Score = 24.4 bits (47), Expect(7) = 2e-56
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -3 / -3
Query: 684 FHFSTDTILQVVK 646
F STDTI QVVK
Sbjct: 3158 FSLSTDTIFQVVK 3120
Score = 71.2 bits (149), Expect(7) = 4e-47
Identities = 27/41 (65%), Positives = 33/41 (80%)
Frame = +3 / +3
Query: 288 PDDDGFYDVDGREHSPPV*HWYRLLCSLAALQRTPICRESF 410
PDDDGF+DVDGREH PPV*H Y +L S+AA QR P+C + +
Sbjct: 717 PDDDGFHDVDGREHRPPV*HRYHVLRSVAAHQRPPLCWQRY 839
Score = 59.3 bits (123), Expect(7) = 4e-47
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = +3 / +2
Query: 405 SFRTI*GPKGGYTCT*VTLHCSQLGRYGFGCLEAQ 509
SF TI GPKGGY+ T*V L+CSQLG YGF C+E +
Sbjct: 1712 SF*TIQGPKGGYSST*VGLYCSQLGSYGFRCMEGK 1816
Score = 57.4 bits (119), Expect(7) = 4e-47
Identities = 23/35 (65%), Positives = 26/35 (74%)
Frame = +1 / +3
Query: 22 KTRPNQNRLIRQ*PRPPAMEKGKGLARRWAVELHD 126
+ P + R + RPPAMEKGKGLARRWAVELHD
Sbjct: 93 RREPEEIRRLPHPHRPPAMEKGKGLARRWAVELHD 197
Score = 48.7 bits (100), Expect(7) = 4e-47
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = +3 / +2
Query: 504 AQHIGSSSDKCIRLGIFTVSCSG 572
AQ++GSSS+KCIRLG+FT SCSG
Sbjct: 1892 AQYVGSSSNKCIRLGVFTGSCSG 1960
Score = 25.8 bits (50), Expect(7) = 4e-47
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2 / +3
Query: 191 KRTTPPARGS 220
+RTTPPARGS
Sbjct: 372 RRTTPPARGS 401
Score = 25.8 bits (50), Expect(7) = 4e-47
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2 / +3
Query: 572 RLNMLVEGSP 601
RLNMLVEGSP
Sbjct: 3048 RLNMLVEGSP 3077
Score = 25.8 bits (50), Expect(7) = 4e-47
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2 / +1
Query: 647 FTTWRMVSVL 676
FTTW+MVSVL
Sbjct: 3121 FTTWKMVSVL 3150
Score = 57.0 bits (118), Expect(4) = 5e-26
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = -3 / -3
Query: 504 LPNTQTHSGQVESSEE*LRCKCIHPWVLKWFEN 406
LP T THS QVES+++ LRC IHPWVL+WF+N
Sbjct: 1811 LPYT*THSCQVESNKDQLRC*SIHPWVLEWFKN 1713
Score = 56.1 bits (116), Expect(4) = 5e-26
Identities = 27/47 (57%), Positives = 31/47 (65%)
Frame = -3 / -2
Query: 405 FPDRSECVEGLPESREDDTNAKQVDCAPGXXXXXXXXHQVLEGRLRH 265
F +R+E +GLP+S E DT AKQVD APG HQVLE RLRH
Sbjct: 834 FANRAEGADGLPQSGERDTYAKQVDGAPGHPHHETHHHQVLERRLRH 694
Score = 41.4 bits (84), Expect(4) = 5e-26
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -3 / -3
Query: 570 PSRRQ*RYPV*CICRKKTQCVEL 502
PSR Q*++P+*CIC KKTQ +EL
Sbjct: 1958 PSRSQ*KHPI*CICWKKTQRIEL 1890
Score = 30.4 bits (60), Expect(4) = 5e-26
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = -1 / -2
Query: 602 KGIPPPAYSTS 570
KGIPPPAYSTS
Sbjct: 3078 KGIPPPAYSTS 3046
Score = 53.3 bits (110), Expect(2) = 2e-13
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = -2 / -2
Query: 502 SKHPNP*RPS*EQ*RVT*VQVYPPLGP*MVRKLSR 398
S H NP* PS*EQ*R T*V YPPLGP*MV+KL +
Sbjct: 1809 SIHLNP*LPS*EQ*RPT*VLEYPPLGP*MVQKLQK 1705
Score = 42.8 bits (87), Expect(2) = 2e-13
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = -2 / -2
Query: 610 ITSRGSLHQHIQPPEQETVKIPSLMHLSEEDPMC*A 503
I SR +L PEQE VK P+LMHL EEDP *A
Sbjct: 1998 INSRSNLGGISNIPEQEPVKTPNLMHLLEEDPTY*A 1891
Score = 43.2 bits (88), Expect(3) = 6e-12
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = +2 / +1
Query: 497 FGSSTHWVFFRQMHQTGYLHCLLLG 571
F SS WVFF+QMHQ G H LLLG
Sbjct: 1885 FYSSIRWVFFQQMHQIGCFHWLLLG 1959
Score = 40.5 bits (82), Expect(3) = 6e-12
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +2 / +1
Query: 404 KFSNHLRTQGWIXXXXXXXXXXXTWPLWVWVFG 502
+F NH RTQGWI TW LWV V+G
Sbjct: 1711 QFLNHSRTQGWIL*HLSWSLLLSTWQLWV*VYG 1809
Score = 32.7 bits (65), Expect(3) = 6e-12
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +2 / +2
Query: 287 T***WVL*CGWPGA 328
T***WV *CGWPGA
Sbjct: 716 T***WVS*CGWPGA 757
Score = 32.7 bits (65), Expect = 4.2
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1 / +2
Query: 505 LNTLGLLPTNASDWVSSLSPAREVEYAGGGIPL 603
++T+ + + S+ +S + +EVEYAGGGIPL
Sbjct: 2981 IDTMYIYSSGCSN*LSFILCWQEVEYAGGGIPL 3079
>LOC_Os03g49940:12003.t04341:unspliced-genomic integral membrane protein DUF6 containing protein, expressed|
Length = 3122
Score = 25.4 bits (49), Expect(2) = 9.6
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +1 / +2
Query: 643 WLYYLEDGICTKVKFIPW*REKFYSGLLEKFYSGLLYF 756
WLY++ + + W*R + L + ++GL F
Sbjct: 2021 WLYFMNPSESICISWYRW*RWVTFQQLKPQLFTGLSQF 2134
Score = 23.1 bits (44), Expect(2) = 9.6
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2 / +3
Query: 527 RQMHQTGYLHC 559
RQ+H GY HC
Sbjct: 1902 RQLHFLGYQHC 1934
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 364,825,018
Number of extensions: 5821213
Number of successful extensions: 25552
Number of sequences better than 10.0: 23
Length of query: 324
Length of database: 55,613,886
Length adjustment: 50
Effective length of query: 274
Effective length of database: 52,799,986
Effective search space: 14467196164
Effective search space used: 14467196164
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)