| Clone Name | FLbaf86m13 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT830516.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z62, full insert sequence Length = 879 Score = 589 bits (297), Expect = e-165 Identities = 482/543 (88%), Gaps = 3/543 (0%) Strand = Plus / Plus Query: 64 cggccgccggcgatggagaagggcaagggtctcgcccgacgctgggcagtggagctccac 123 ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| Sbjct: 74 cggccgccggcgatggagaagggcaagggcctcgcccgccgctgggcggtggagctccac 133 Query: 124 gacgtatcttcctcctcctcctcgcctgcct---tccccgatcctcctggcttcaccaga 180 |||| || |||||||||||||| | ||| ||||||| || || |||||||||||| Sbjct: 134 gacgcctcctcctcctcctcctcccactcctccatccccgacccgcccggcttcaccaga 193 Query: 181 tccgccccggaagcggacgacgccgccagcgcgcggcagcgcaaggagaccgaagctgcc 240 |||||||| || ||||||||||||||| ||||||||||||| ||||| |||| | || Sbjct: 194 tccgcccccgacgcggacgacgccgccggcgcgcggcagcggaaggattccgagaccgcg 253 Query: 241 tggaaggggcagaaagcctgggaggtggcgcaggcgcccttcaagaacctgatgatgatg 300 ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 254 tggaaggcgcagaaagcgtgggaggtggcgcaggcgccgttcaagaacctgatgatgatg 313 Query: 301 ggttttatgatgtggatggccgggagcacagtccacctgtttagcattggtatcgtcttc 360 ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| ||| Sbjct: 314 ggtttcatgatgtggatggccgggagcaccgtccacctgtttagcataggtatcacgttc 373 Query: 361 tctgctctctggcagcccttcaacgcactccgatctgtcgggaaagttttcgaaccattt 420 || ||||| ||||||||| ||| ||| ||||| ||||| || |||||||| |||||||| Sbjct: 374 tccgctctgtggcagcccatcagcgccctccgctctgttggcaaagtttttgaaccattc 433 Query: 421 aaggacccaagggtggatacacttgcacctaagttactcttcactgctctcaacttggcc 480 |||||||||||||||||||| || ||||||||||| |||| | ||||||||||||||| Sbjct: 434 aaggacccaagggtggatactctagcacctaagttggtctttattgctctcaacttggca 493 Query: 481 gctatgggtttgggtgtttggaagctcaacacattgggtcttcttccgacaaatgcatca 540 ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||||||||| Sbjct: 494 gctatgggtttaggtgtatggaagctcaatacgttgggtcttcttccaacaaatgcatca 553 Query: 541 gactgggtatcttcactgtctcctgctcgggaggttgaatatgctggtggagggatcccc 600 || ||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 554 gattgggtgttttcactggctcctgctcgggaggttgaatatgctggtggagggatcccc 613 Query: 601 ttg 603 ||| Sbjct: 614 ttg 616
>ref|NM_001056689.1| Oryza sativa (japonica cultivar-group) Os03g0360500 (Os03g0360500) mRNA, complete cds Length = 895 Score = 589 bits (297), Expect = e-165 Identities = 482/543 (88%), Gaps = 3/543 (0%) Strand = Plus / Plus Query: 64 cggccgccggcgatggagaagggcaagggtctcgcccgacgctgggcagtggagctccac 123 ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| Sbjct: 120 cggccgccggcgatggagaagggcaagggcctcgcccgccgctgggcggtggagctccac 179 Query: 124 gacgtatcttcctcctcctcctcgcctgcct---tccccgatcctcctggcttcaccaga 180 |||| || |||||||||||||| | ||| ||||||| || || |||||||||||| Sbjct: 180 gacgcctcctcctcctcctcctcccactcctccatccccgacccgcccggcttcaccaga 239 Query: 181 tccgccccggaagcggacgacgccgccagcgcgcggcagcgcaaggagaccgaagctgcc 240 |||||||| || ||||||||||||||| ||||||||||||| ||||| |||| | || Sbjct: 240 tccgcccccgacgcggacgacgccgccggcgcgcggcagcggaaggattccgagaccgcg 299 Query: 241 tggaaggggcagaaagcctgggaggtggcgcaggcgcccttcaagaacctgatgatgatg 300 ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 300 tggaaggcgcagaaagcgtgggaggtggcgcaggcgccgttcaagaacctgatgatgatg 359 Query: 301 ggttttatgatgtggatggccgggagcacagtccacctgtttagcattggtatcgtcttc 360 ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| ||| Sbjct: 360 ggtttcatgatgtggatggccgggagcaccgtccacctgtttagcataggtatcacgttc 419 Query: 361 tctgctctctggcagcccttcaacgcactccgatctgtcgggaaagttttcgaaccattt 420 || ||||| ||||||||| ||| ||| ||||| ||||| || |||||||| |||||||| Sbjct: 420 tccgctctgtggcagcccatcagcgccctccgctctgttggcaaagtttttgaaccattc 479 Query: 421 aaggacccaagggtggatacacttgcacctaagttactcttcactgctctcaacttggcc 480 |||||||||||||||||||| || ||||||||||| |||| | ||||||||||||||| Sbjct: 480 aaggacccaagggtggatactctagcacctaagttggtctttattgctctcaacttggca 539 Query: 481 gctatgggtttgggtgtttggaagctcaacacattgggtcttcttccgacaaatgcatca 540 ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||||||||| Sbjct: 540 gctatgggtttaggtgtatggaagctcaatacgttgggtcttcttccaacaaatgcatca 599 Query: 541 gactgggtatcttcactgtctcctgctcgggaggttgaatatgctggtggagggatcccc 600 || ||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 gattgggtgttttcactggctcctgctcgggaggttgaatatgctggtggagggatcccc 659 Query: 601 ttg 603 ||| Sbjct: 660 ttg 662
>dbj|AK101285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033E17, full insert sequence Length = 895 Score = 589 bits (297), Expect = e-165 Identities = 482/543 (88%), Gaps = 3/543 (0%) Strand = Plus / Plus Query: 64 cggccgccggcgatggagaagggcaagggtctcgcccgacgctgggcagtggagctccac 123 ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| Sbjct: 120 cggccgccggcgatggagaagggcaagggcctcgcccgccgctgggcggtggagctccac 179 Query: 124 gacgtatcttcctcctcctcctcgcctgcct---tccccgatcctcctggcttcaccaga 180 |||| || |||||||||||||| | ||| ||||||| || || |||||||||||| Sbjct: 180 gacgcctcctcctcctcctcctcccactcctccatccccgacccgcccggcttcaccaga 239 Query: 181 tccgccccggaagcggacgacgccgccagcgcgcggcagcgcaaggagaccgaagctgcc 240 |||||||| || ||||||||||||||| ||||||||||||| ||||| |||| | || Sbjct: 240 tccgcccccgacgcggacgacgccgccggcgcgcggcagcggaaggattccgagaccgcg 299 Query: 241 tggaaggggcagaaagcctgggaggtggcgcaggcgcccttcaagaacctgatgatgatg 300 ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 300 tggaaggcgcagaaagcgtgggaggtggcgcaggcgccgttcaagaacctgatgatgatg 359 Query: 301 ggttttatgatgtggatggccgggagcacagtccacctgtttagcattggtatcgtcttc 360 ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| ||| Sbjct: 360 ggtttcatgatgtggatggccgggagcaccgtccacctgtttagcataggtatcacgttc 419 Query: 361 tctgctctctggcagcccttcaacgcactccgatctgtcgggaaagttttcgaaccattt 420 || ||||| ||||||||| ||| ||| ||||| ||||| || |||||||| |||||||| Sbjct: 420 tccgctctgtggcagcccatcagcgccctccgctctgttggcaaagtttttgaaccattc 479 Query: 421 aaggacccaagggtggatacacttgcacctaagttactcttcactgctctcaacttggcc 480 |||||||||||||||||||| || ||||||||||| |||| | ||||||||||||||| Sbjct: 480 aaggacccaagggtggatactctagcacctaagttggtctttattgctctcaacttggca 539 Query: 481 gctatgggtttgggtgtttggaagctcaacacattgggtcttcttccgacaaatgcatca 540 ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||||||||| Sbjct: 540 gctatgggtttaggtgtatggaagctcaatacgttgggtcttcttccaacaaatgcatca 599 Query: 541 gactgggtatcttcactgtctcctgctcgggaggttgaatatgctggtggagggatcccc 600 || ||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 gattgggtgttttcactggctcctgctcgggaggttgaatatgctggtggagggatcccc 659 Query: 601 ttg 603 ||| Sbjct: 660 ttg 662
>dbj|AK059166.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-E02, full insert sequence Length = 850 Score = 589 bits (297), Expect = e-165 Identities = 482/543 (88%), Gaps = 3/543 (0%) Strand = Plus / Plus Query: 64 cggccgccggcgatggagaagggcaagggtctcgcccgacgctgggcagtggagctccac 123 ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| Sbjct: 75 cggccgccggcgatggagaagggcaagggcctcgcccgccgctgggcggtggagctccac 134 Query: 124 gacgtatcttcctcctcctcctcgcctgcct---tccccgatcctcctggcttcaccaga 180 |||| || |||||||||||||| | ||| ||||||| || || |||||||||||| Sbjct: 135 gacgcctcctcctcctcctcctcccactcctccatccccgacccgcccggcttcaccaga 194 Query: 181 tccgccccggaagcggacgacgccgccagcgcgcggcagcgcaaggagaccgaagctgcc 240 |||||||| || ||||||||||||||| ||||||||||||| ||||| |||| | || Sbjct: 195 tccgcccccgacgcggacgacgccgccggcgcgcggcagcggaaggattccgagaccgcg 254 Query: 241 tggaaggggcagaaagcctgggaggtggcgcaggcgcccttcaagaacctgatgatgatg 300 ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 255 tggaaggcgcagaaagcgtgggaggtggcgcaggcgccgttcaagaacctgatgatgatg 314 Query: 301 ggttttatgatgtggatggccgggagcacagtccacctgtttagcattggtatcgtcttc 360 ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| ||| Sbjct: 315 ggtttcatgatgtggatggccgggagcaccgtccacctgtttagcataggtatcacgttc 374 Query: 361 tctgctctctggcagcccttcaacgcactccgatctgtcgggaaagttttcgaaccattt 420 || ||||| ||||||||| ||| ||| ||||| ||||| || |||||||| |||||||| Sbjct: 375 tccgctctgtggcagcccatcagcgccctccgctctgttggcaaagtttttgaaccattc 434 Query: 421 aaggacccaagggtggatacacttgcacctaagttactcttcactgctctcaacttggcc 480 |||||||||||||||||||| || ||||||||||| |||| | ||||||||||||||| Sbjct: 435 aaggacccaagggtggatactctagcacctaagttggtctttattgctctcaacttggca 494 Query: 481 gctatgggtttgggtgtttggaagctcaacacattgggtcttcttccgacaaatgcatca 540 ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||||||||| Sbjct: 495 gctatgggtttaggtgtatggaagctcaatacgttgggtcttcttccaacaaatgcatca 554 Query: 541 gactgggtatcttcactgtctcctgctcgggaggttgaatatgctggtggagggatcccc 600 || ||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 555 gattgggtgttttcactggctcctgctcgggaggttgaatatgctggtggagggatcccc 614 Query: 601 ttg 603 ||| Sbjct: 615 ttg 617
>gb|DQ245458.1| Zea mays clone 15753 mRNA sequence Length = 709 Score = 452 bits (228), Expect = e-123 Identities = 461/539 (85%), Gaps = 6/539 (1%) Strand = Plus / Plus Query: 73 gcgatggagaagggcaagggtctcgcccgacgctgggcagtggagctccacgacgtatct 132 |||||||||||||| ||||| ||||| || |||||||| |||||||||| ||||| Sbjct: 62 gcgatggagaagggaaagggcctcgctcgccgctgggcggtggagctccccgacg----- 116 Query: 133 tcctcctcctcctcgcctgccttccccgatcctcctggcttcaccagatccgccccggaa 192 ||||||||||||| || ||| ||||||| || || ||||||||||||||||| || || Sbjct: 117 -cctcctcctcctcccccgccgtccccgacccgcccggcttcaccagatccgcgcctgac 175 Query: 193 gcggacgacgccgccagcgcgcggcagcgcaaggagaccgaagctgcctggaaggggcag 252 |||||||||||||| | ||||| ||||||||||| |||| ||||| ||||||| |||| Sbjct: 176 gcggacgacgccgctggagcgcgccagcgcaaggactccgaggctgcatggaaggcgcag 235 Query: 253 aaagcctgggaggtggcgcaggcgcccttcaagaacctgatgatgatgggttttatgatg 312 ||||| ||||| || |||||||| || ||||||||||||||||||||||| ||||||||| Sbjct: 236 aaagcttgggaagttgcgcaggctccgttcaagaacctgatgatgatgggatttatgatg 295 Query: 313 tggatggccgggagcacagtccacctgtttagcattggtatcgtcttctctgctctctgg 372 |||||||| |||||||| |||||||| || ||||| || || |||||||||||| ||| Sbjct: 296 tggatggcagggagcactgtccacctcttcagcatcggaattaccttctctgctctgtgg 355 Query: 373 cagcccttcaacgcactccgatctgtcgggaaagttttcgaaccatttaaggacccaagg 432 || ||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 356 caacccctcaacgctctccgatctgttgggaaagtttttgaaccatttaaggacccaagg 415 Query: 433 gtggatacacttgcacctaagttactcttcactgctctcaacttggccgctatgggtttg 492 |||||||| |||| |||||||| ||||| | ||| ||||| ||||| || ||||| ||| Sbjct: 416 gtggatactattgctcctaagttgctctttattgccctcaatttggctgccatgggattg 475 Query: 493 ggtgtttggaagctcaacacattgggtcttcttccgacaaatgcatcagactgggtatct 552 ||| | |||||||| || |||||||| |||||||| |||||| ||||||| ||||| ||| Sbjct: 476 ggtatatggaagcttaatacattgggccttcttccaacaaatccatcagattgggtgtct 535 Query: 553 tcactgtctcctgctcgggaggttgaatatgctggtggagggatccccttgatgtaatg 611 || ||| ||||||||||||||||||||||||| || |||||| ||||||| || ||||| Sbjct: 536 tctctggctcctgctcgggaggttgaatatgccggaggagggctccccttaatttaatg 594
>gb|AY105445.1| Zea mays PCO122547 mRNA sequence Length = 856 Score = 452 bits (228), Expect = e-123 Identities = 461/539 (85%), Gaps = 6/539 (1%) Strand = Plus / Plus Query: 73 gcgatggagaagggcaagggtctcgcccgacgctgggcagtggagctccacgacgtatct 132 |||||||||||||| ||||| ||||| || |||||||| |||||||||| ||||| Sbjct: 138 gcgatggagaagggaaagggcctcgctcgccgctgggcggtggagctccccgacg----- 192 Query: 133 tcctcctcctcctcgcctgccttccccgatcctcctggcttcaccagatccgccccggaa 192 ||||||||||||| || ||| ||||||| || || ||||||||||||||||| || || Sbjct: 193 -cctcctcctcctcccccgccgtccccgacccgcccggcttcaccagatccgcgcccgac 251 Query: 193 gcggacgacgccgccagcgcgcggcagcgcaaggagaccgaagctgcctggaaggggcag 252 |||||||||||||| | ||||| ||||||||||| |||| ||||| ||||||| |||| Sbjct: 252 gcggacgacgccgctggagcgcgccagcgcaaggactccgaggctgcatggaaggcgcag 311 Query: 253 aaagcctgggaggtggcgcaggcgcccttcaagaacctgatgatgatgggttttatgatg 312 ||||| ||||| || |||||||| || ||||||||||||||||||||||| ||||||||| Sbjct: 312 aaagcttgggaagttgcgcaggctccgttcaagaacctgatgatgatgggatttatgatg 371 Query: 313 tggatggccgggagcacagtccacctgtttagcattggtatcgtcttctctgctctctgg 372 |||||||| |||||||| |||||||| || ||||| || || |||||||||||| ||| Sbjct: 372 tggatggcagggagcactgtccacctcttcagcatcggaattaccttctctgctctgtgg 431 Query: 373 cagcccttcaacgcactccgatctgtcgggaaagttttcgaaccatttaaggacccaagg 432 || ||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 432 caacccctcaacgctctccgatctgttgggaaagtttttgaaccatttaaggacccaagg 491 Query: 433 gtggatacacttgcacctaagttactcttcactgctctcaacttggccgctatgggtttg 492 |||||||| |||| |||||||| ||||| | ||| ||||| ||||| || ||||| ||| Sbjct: 492 gtggatactattgctcctaagttgctctttattgccctcaatttggctgccatgggattg 551 Query: 493 ggtgtttggaagctcaacacattgggtcttcttccgacaaatgcatcagactgggtatct 552 ||| | |||||||| || |||||||| |||||||| |||||| ||||||| ||||| ||| Sbjct: 552 ggtatatggaagcttaatacattgggccttcttccaacaaatccatcagattgggtgtct 611 Query: 553 tcactgtctcctgctcgggaggttgaatatgctggtggagggatccccttgatgtaatg 611 || ||| ||||||||||||||||||||||||| || |||||| ||||||| || ||||| Sbjct: 612 tctctggctcctgctcgggaggttgaatatgccggaggagggctccccttaatttaatg 670
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 190 bits (96), Expect = 6e-45 Identities = 138/152 (90%) Strand = Plus / Minus Query: 247 gggcagaaagcctgggaggtggcgcaggcgcccttcaagaacctgatgatgatgggtttt 306 ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 13836499 gggcagaaagcgtgggaggtggcgcaggcgccgttcaagaacctgatgatgatgggtttc 13836440 Query: 307 atgatgtggatggccgggagcacagtccacctgtttagcattggtatcgtcttctctgct 366 ||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| ||| Sbjct: 13836439 atgatgtggatggccgggagcaccgtccacctgtttagcataggtatcacgttctccgct 13836380 Query: 367 ctctggcagcccttcaacgcactccgatctgt 398 || ||||||||| ||| ||| ||||| ||||| Sbjct: 13836379 ctgtggcagcccatcagcgccctccgctctgt 13836348 Score = 123 bits (62), Expect = 1e-24 Identities = 112/128 (87%), Gaps = 3/128 (2%) Strand = Plus / Minus Query: 64 cggccgccggcgatggagaagggcaagggtctcgcccgacgctgggcagtggagctccac 123 ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| Sbjct: 13837040 cggccgccggcgatggagaagggcaagggcctcgcccgccgctgggcggtggagctccac 13836981 Query: 124 gacgtatcttcctcctcctcctcgc---ctgccttccccgatcctcctggcttcaccaga 180 |||| || |||||||||||||| | | || ||||||| || || |||||||||||| Sbjct: 13836980 gacgcctcctcctcctcctcctcccactcctccatccccgacccgcccggcttcaccaga 13836921 Query: 181 tccgcccc 188 |||||||| Sbjct: 13836920 tccgcccc 13836913 Score = 111 bits (56), Expect = 5e-21 Identities = 89/100 (89%) Strand = Plus / Minus Query: 405 agttttcgaaccatttaaggacccaagggtggatacacttgcacctaagttactcttcac 464 |||||| |||||||| |||||||||||||||||||| || ||||||||||| |||| | Sbjct: 13835463 agtttttgaaccattcaaggacccaagggtggatactctagcacctaagttggtctttat 13835404 Query: 465 tgctctcaacttggccgctatgggtttgggtgtttggaag 504 ||||||||||||||| ||||||||||| ||||| |||||| Sbjct: 13835403 tgctctcaacttggcagctatgggtttaggtgtatggaag 13835364 Score = 81.8 bits (41), Expect = 4e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 503 agctcaacacattgggtcttcttccgacaaatgcatcagactgggtatcttcactgtctc 562 ||||||| || |||||||||||||| |||||||||||||| ||||| | ||||||| ||| Sbjct: 13835284 agctcaatacgttgggtcttcttccaacaaatgcatcagattgggtgttttcactggctc 13835225 Query: 563 ctgctcggg 571 ||||||||| Sbjct: 13835224 ctgctcggg 13835216 Score = 67.9 bits (34), Expect = 6e-08 Identities = 34/34 (100%) Strand = Plus / Minus Query: 570 ggaggttgaatatgctggtggagggatccccttg 603 |||||||||||||||||||||||||||||||||| Sbjct: 13834129 ggaggttgaatatgctggtggagggatccccttg 13834096 Score = 50.1 bits (25), Expect = 0.015 Identities = 31/33 (93%) Strand = Plus / Minus Query: 195 ggacgacgccgccagcgcgcggcagcgcaagga 227 ||||||||||||| ||||||||||||| ||||| Sbjct: 13836799 ggacgacgccgccggcgcgcggcagcggaagga 13836767
>gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0048D11, from chromosome 3, complete sequence Length = 158911 Score = 190 bits (96), Expect = 6e-45 Identities = 138/152 (90%) Strand = Plus / Minus Query: 247 gggcagaaagcctgggaggtggcgcaggcgcccttcaagaacctgatgatgatgggtttt 306 ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 118052 gggcagaaagcgtgggaggtggcgcaggcgccgttcaagaacctgatgatgatgggtttc 117993 Query: 307 atgatgtggatggccgggagcacagtccacctgtttagcattggtatcgtcttctctgct 366 ||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| ||| Sbjct: 117992 atgatgtggatggccgggagcaccgtccacctgtttagcataggtatcacgttctccgct 117933 Query: 367 ctctggcagcccttcaacgcactccgatctgt 398 || ||||||||| ||| ||| ||||| ||||| Sbjct: 117932 ctgtggcagcccatcagcgccctccgctctgt 117901 Score = 123 bits (62), Expect = 1e-24 Identities = 112/128 (87%), Gaps = 3/128 (2%) Strand = Plus / Minus Query: 64 cggccgccggcgatggagaagggcaagggtctcgcccgacgctgggcagtggagctccac 123 ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| Sbjct: 118593 cggccgccggcgatggagaagggcaagggcctcgcccgccgctgggcggtggagctccac 118534 Query: 124 gacgtatcttcctcctcctcctcgc---ctgccttccccgatcctcctggcttcaccaga 180 |||| || |||||||||||||| | | || ||||||| || || |||||||||||| Sbjct: 118533 gacgcctcctcctcctcctcctcccactcctccatccccgacccgcccggcttcaccaga 118474 Query: 181 tccgcccc 188 |||||||| Sbjct: 118473 tccgcccc 118466 Score = 111 bits (56), Expect = 5e-21 Identities = 89/100 (89%) Strand = Plus / Minus Query: 405 agttttcgaaccatttaaggacccaagggtggatacacttgcacctaagttactcttcac 464 |||||| |||||||| |||||||||||||||||||| || ||||||||||| |||| | Sbjct: 117016 agtttttgaaccattcaaggacccaagggtggatactctagcacctaagttggtctttat 116957 Query: 465 tgctctcaacttggccgctatgggtttgggtgtttggaag 504 ||||||||||||||| ||||||||||| ||||| |||||| Sbjct: 116956 tgctctcaacttggcagctatgggtttaggtgtatggaag 116917 Score = 81.8 bits (41), Expect = 4e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 503 agctcaacacattgggtcttcttccgacaaatgcatcagactgggtatcttcactgtctc 562 ||||||| || |||||||||||||| |||||||||||||| ||||| | ||||||| ||| Sbjct: 116837 agctcaatacgttgggtcttcttccaacaaatgcatcagattgggtgttttcactggctc 116778 Query: 563 ctgctcggg 571 ||||||||| Sbjct: 116777 ctgctcggg 116769 Score = 67.9 bits (34), Expect = 6e-08 Identities = 34/34 (100%) Strand = Plus / Minus Query: 570 ggaggttgaatatgctggtggagggatccccttg 603 |||||||||||||||||||||||||||||||||| Sbjct: 115682 ggaggttgaatatgctggtggagggatccccttg 115649 Score = 50.1 bits (25), Expect = 0.015 Identities = 31/33 (93%) Strand = Plus / Minus Query: 195 ggacgacgccgccagcgcgcggcagcgcaagga 227 ||||||||||||| ||||||||||||| ||||| Sbjct: 118352 ggacgacgccgccggcgcgcggcagcggaagga 118320
>emb|CT982996.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 809 Score = 95.6 bits (48), Expect = 3e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 259 tgggaggtggcgcaggcgcccttcaagaacctgatgatgatgggttttatgatgtggatg 318 ||||||||||||||||| || |||||||| ||||||||||||| || |||||||||||| Sbjct: 14 tgggaggtggcgcaggccccgttcaagaatttgatgatgatggggttcatgatgtggatg 73 Query: 319 gccgggagcacagtccacctgtttagcattggtatc 354 | || ||||| ||||| || ||||||||||||||| Sbjct: 74 tctggaagcactgtccatctctttagcattggtatc 109
>gb|AC189393.1| Brassica rapa subsp. pekinensis clone KBrB054O10, complete sequence Length = 156199 Score = 89.7 bits (45), Expect = 2e-14 Identities = 108/129 (83%) Strand = Plus / Plus Query: 249 gcagaaagcctgggaggtggcgcaggcgcccttcaagaacctgatgatgatgggttttat 308 ||||||||| ||||| || |||||| | || || ||||| |||||||||||||| || || Sbjct: 49950 gcagaaagcatgggaagtagcgcagtcaccgtttaagaatctgatgatgatggggttcat 50009 Query: 309 gatgtggatggccgggagcacagtccacctgtttagcattggtatcgtcttctctgctct 368 |||||||||||| |||| ||| || || || ||||||||||| ||| ||||||||||| Sbjct: 50010 gatgtggatggctgggaacactgttcatctctttagcattgggatcactttctctgctct 50069 Query: 369 ctggcagcc 377 |||||||| Sbjct: 50070 ttggcagcc 50078
>gb|BT014174.1| Lycopersicon esculentum clone 133316R, mRNA sequence Length = 908 Score = 87.7 bits (44), Expect = 7e-14 Identities = 89/104 (85%) Strand = Plus / Plus Query: 250 cagaaagcctgggaggtggcgcaggcgcccttcaagaacctgatgatgatgggttttatg 309 |||||||| ||||| ||||| || || || |||||||| ||||||||||||| || ||| Sbjct: 221 cagaaagcgtgggaagtggcacaagcacctttcaagaatttgatgatgatgggcttcatg 280 Query: 310 atgtggatggccgggagcacagtccacctgtttagcattggtat 353 ||||||||||| || |||||||| || |||||||||||||||| Sbjct: 281 atgtggatggctggaagcacagttcatttgtttagcattggtat 324 Score = 54.0 bits (27), Expect = 0.001 Identities = 78/95 (82%) Strand = Plus / Plus Query: 499 tggaagctcaacacattgggtcttcttccgacaaatgcatcagactgggtatcttcactg 558 |||||||| ||||| |||||||||||||| || |||| ||||| ||||| || || || Sbjct: 470 tggaagcttaacactttgggtcttcttccaactcatgcgtcagattgggtttcatccttg 529 Query: 559 tctcctgctcgggaggttgaatatgctggtggagg 593 | ||||| | ||||||||| ||| |||||||||| Sbjct: 530 ccacctgcccaggaggttgagtattctggtggagg 564
>emb|AL365234.1|ATT30N20 Arabidopsis thaliana DNA chromosome 5, BAC clone T30N20 (ESSA project) Length = 98473 Score = 73.8 bits (37), Expect = 1e-09 Identities = 106/129 (82%) Strand = Plus / Plus Query: 249 gcagaaagcctgggaggtggcgcaggcgcccttcaagaacctgatgatgatgggttttat 308 ||||||||| ||||| || ||||| | || || ||||| |||||||||||||||| || Sbjct: 16568 gcagaaagcgtgggaagtagcgcaatctccatttaagaatttgatgatgatgggtttcat 16627 Query: 309 gatgtggatggccgggagcacagtccacctgtttagcattggtatcgtcttctctgctct 368 |||||||||||| || | |||||| || || ||||| |||||||| ||||||||||| Sbjct: 16628 gatgtggatggctggaaacacagttcatctttttagtattggtattactttctctgctct 16687 Query: 369 ctggcagcc 377 |||||||| Sbjct: 16688 ttggcagcc 16696
>ref|NM_121116.2| Arabidopsis thaliana unknown protein (AT5G10780) mRNA, complete cds Length = 903 Score = 71.9 bits (36), Expect = 4e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 290 tgatgatgatgggttttatgatgtggatggccgggagcacagtccacctgtttagcattg 349 |||||||||||||||| |||||||||||||| || | |||||| || || ||||| |||| Sbjct: 300 tgatgatgatgggtttcatgatgtggatggctggaaacacagttcatctttttagtattg 359 Query: 350 gtatcgtcttctctgctctctggcagcc 377 |||| ||||||||||| |||||||| Sbjct: 360 gtattactttctctgctctttggcagcc 387
>gb|AY057731.1| Arabidopsis thaliana AT5g10780/T30N20_50 mRNA, complete cds Length = 543 Score = 71.9 bits (36), Expect = 4e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 290 tgatgatgatgggttttatgatgtggatggccgggagcacagtccacctgtttagcattg 349 |||||||||||||||| |||||||||||||| || | |||||| || || ||||| |||| Sbjct: 224 tgatgatgatgggtttcatgatgtggatggctggaaacacagttcatctttttagtattg 283 Query: 350 gtatcgtcttctctgctctctggcagcc 377 |||| ||||||||||| |||||||| Sbjct: 284 gtattactttctctgctctttggcagcc 311
>gb|AF428403.1|AF428403 Arabidopsis thaliana AT5g10780/T30N20_50 mRNA, complete cds Length = 873 Score = 71.9 bits (36), Expect = 4e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 290 tgatgatgatgggttttatgatgtggatggccgggagcacagtccacctgtttagcattg 349 |||||||||||||||| |||||||||||||| || | |||||| || || ||||| |||| Sbjct: 274 tgatgatgatgggtttcatgatgtggatggctggaaacacagttcatctttttagtattg 333 Query: 350 gtatcgtcttctctgctctctggcagcc 377 |||| ||||||||||| |||||||| Sbjct: 334 gtattactttctctgctctttggcagcc 361
>gb|AY037209.1| Arabidopsis thaliana AT5g10780/T30N20_50 mRNA, complete cds Length = 852 Score = 71.9 bits (36), Expect = 4e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 290 tgatgatgatgggttttatgatgtggatggccgggagcacagtccacctgtttagcattg 349 |||||||||||||||| |||||||||||||| || | |||||| || || ||||| |||| Sbjct: 300 tgatgatgatgggtttcatgatgtggatggctggaaacacagttcatctttttagtattg 359 Query: 350 gtatcgtcttctctgctctctggcagcc 377 |||| ||||||||||| |||||||| Sbjct: 360 gtattactttctctgctctttggcagcc 387
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Plus Query: 192 agcggacgacgccgccagcgcgcggcagcgc 222 |||||||||||||||| |||||||||||||| Sbjct: 2300750 agcggacgacgccgcccgcgcgcggcagcgc 2300780
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Minus Query: 192 agcggacgacgccgccagcgcgcggcagcgc 222 |||||||||||||||| |||||||||||||| Sbjct: 1526382 agcggacgacgccgcccgcgcgcggcagcgc 1526352
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Plus Query: 192 agcggacgacgccgccagcgcgcggcagcgc 222 |||||||||||||||| |||||||||||||| Sbjct: 462228 agcggacgacgccgcccgcgcgcggcagcgc 462258
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Minus Query: 192 agcggacgacgccgccagcgcgcggcagcgc 222 |||||||||||||||| |||||||||||||| Sbjct: 2521590 agcggacgacgccgcccgcgcgcggcagcgc 2521560
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 48.1 bits (24), Expect = 0.060 Identities = 30/32 (93%) Strand = Plus / Minus Query: 192 agcggacgacgccgccagcgcgcggcagcgca 223 ||||||| |||||||| ||||||||||||||| Sbjct: 2169617 agcggaccacgccgcccgcgcgcggcagcgca 2169586
>gb|CP000441.1| Burkholderia cepacia AMMD chromosome 2, complete sequence Length = 2646969 Score = 46.1 bits (23), Expect = 0.24 Identities = 29/31 (93%) Strand = Plus / Plus Query: 192 agcggacgacgccgccagcgcgcggcagcgc 222 ||||||| |||||||| |||||||||||||| Sbjct: 372825 agcggaccacgccgcccgcgcgcggcagcgc 372855
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 46.1 bits (23), Expect = 0.24 Identities = 23/23 (100%) Strand = Plus / Plus Query: 264 ggtggcgcaggcgcccttcaaga 286 ||||||||||||||||||||||| Sbjct: 942020 ggtggcgcaggcgcccttcaaga 942042
>ref|NM_001038222.1| Bos taurus coiled-coil domain containing 116 (CCDC116), mRNA gb|BC111148.1| Bos taurus coiled-coil domain containing 116, mRNA (cDNA clone IMAGE:8051894), complete cds Length = 1982 Score = 46.1 bits (23), Expect = 0.24 Identities = 26/27 (96%) Strand = Plus / Plus Query: 257 cctgggaggtggcgcaggcgcccttca 283 |||||||||||||| |||||||||||| Sbjct: 1551 cctgggaggtggcggaggcgcccttca 1577
>gb|AF466104.1| Xenophilus azovorans aerobic azoreductase (azoB) gene, complete cds Length = 5782 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Plus Query: 201 cgccgccagcgcgcggcagcgc 222 |||||||||||||||||||||| Sbjct: 1964 cgccgccagcgcgcggcagcgc 1985
>ref|NM_001034496.1| Bos taurus similar to XAP-5 protein (MGC128215), mRNA gb|BC103028.1| Bos taurus similar to XAP-5 protein, mRNA (cDNA clone MGC:128215 IMAGE:7958862), complete cds Length = 1799 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Minus Query: 133 tcctcctcctcctcgcctgcct 154 |||||||||||||||||||||| Sbjct: 480 tcctcctcctcctcgcctgcct 459
>emb|AL844892.5| Human DNA sequence from clone RP11-396M20 on chromosome 10 Contains the 5' end of the GRID1 gene for glutamate receptor (ionotropic) delta 1, the 3' end of the gene for friend of EBNA2 (FOE) (KIAA0261) and five CpG islands, complete sequence Length = 167780 Score = 44.1 bits (22), Expect = 0.93 Identities = 25/26 (96%) Strand = Plus / Minus Query: 133 tcctcctcctcctcgcctgccttccc 158 |||||||||||||| ||||||||||| Sbjct: 34144 tcctcctcctcctcccctgccttccc 34119
>gb|AC017006.4| Homo sapiens BAC clone RP11-110G2 from 2, complete sequence Length = 191953 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Plus Query: 137 cctcctcctcgcctgccttccc 158 |||||||||||||||||||||| Sbjct: 12593 cctcctcctcgcctgccttccc 12614
>gb|AC104908.10| Mus musculus chromosome 3, clone RP23-325M18, complete sequence Length = 231792 Score = 44.1 bits (22), Expect = 0.93 Identities = 22/22 (100%) Strand = Plus / Plus Query: 444 tgcacctaagttactcttcact 465 |||||||||||||||||||||| Sbjct: 111680 tgcacctaagttactcttcact 111701
>emb|CT737342.10| Pig DNA sequence from clone CH242-172F13 on chromosome 7, complete sequence Length = 193591 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 cctcctcgcctgccttccccg 160 ||||||||||||||||||||| Sbjct: 189526 cctcctcgcctgccttccccg 189506
>ref|XM_001224161.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_04948) mRNA, complete cds Length = 909 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 ggccgccggcgatggagaagg 85 ||||||||||||||||||||| Sbjct: 818 ggccgccggcgatggagaagg 838
>ref|XM_001178467.1| PREDICTED: Strongylocentrotus purpuratus similar to GA10154-PA (LOC584006), mRNA Length = 1866 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 cgtatcttcctcctcctcctc 146 ||||||||||||||||||||| Sbjct: 352 cgtatcttcctcctcctcctc 332
>ref|XM_783890.2| PREDICTED: Strongylocentrotus purpuratus similar to GA10154-PA (LOC584006), mRNA Length = 1866 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 cgtatcttcctcctcctcctc 146 ||||||||||||||||||||| Sbjct: 352 cgtatcttcctcctcctcctc 332
>ref|NM_001063252.1| Oryza sativa (japonica cultivar-group) Os06g0134700 (Os06g0134700) mRNA, partial cds Length = 2411 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 atcttcctcctcctcctcgcc 149 ||||||||||||||||||||| Sbjct: 9 atcttcctcctcctcctcgcc 29
>dbj|AB260714.1| Oryza rufipogon DNA, locus RLD28, clone:28SNP91W108 Length = 793 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tcttcctcctcctcctcgcct 150 ||||||||||||||||||||| Sbjct: 430 tcttcctcctcctcctcgcct 450
>dbj|AB260703.1| Oryza sativa (japonica cultivar-group) DNA, locus RLD28, clone:28SNP42Dungh Length = 783 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tcttcctcctcctcctcgcct 150 ||||||||||||||||||||| Sbjct: 420 tcttcctcctcctcctcgcct 440
>dbj|AB260702.1| Oryza sativa (japonica cultivar-group) DNA, locus RLD28, clone:28SNP356_CT55 Length = 783 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tcttcctcctcctcctcgcct 150 ||||||||||||||||||||| Sbjct: 420 tcttcctcctcctcctcgcct 440
>dbj|AB260701.1| Oryza sativa (japonica cultivar-group) DNA, locus RLD28, clone:28SNP40Iwate Length = 783 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tcttcctcctcctcctcgcct 150 ||||||||||||||||||||| Sbjct: 420 tcttcctcctcctcctcgcct 440
>dbj|AB260700.1| Oryza rufipogon DNA, locus RLD28, clone:28SNP375W1294-1 Length = 791 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tcttcctcctcctcctcgcct 150 ||||||||||||||||||||| Sbjct: 428 tcttcctcctcctcctcgcct 448
>dbj|AB260699.1| Oryza rufipogon DNA, locus RLD28, clone:28SNP374W1236-1 Length = 793 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tcttcctcctcctcctcgcct 150 ||||||||||||||||||||| Sbjct: 430 tcttcctcctcctcctcgcct 450
>dbj|AB260694.1| Oryza sativa (japonica cultivar-group) DNA, locus RLD28, clone:28SNP225Kosh Length = 783 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tcttcctcctcctcctcgcct 150 ||||||||||||||||||||| Sbjct: 420 tcttcctcctcctcctcgcct 440
>dbj|AB260693.1| Oryza sativa (japonica cultivar-group) DNA, locus RLD28, clone:28SNP216Yume Length = 783 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tcttcctcctcctcctcgcct 150 ||||||||||||||||||||| Sbjct: 420 tcttcctcctcctcctcgcct 440
>dbj|AB260691.1| Oryza sativa (japonica cultivar-group) DNA, locus RLD28, clone:28SNP16Unr17 Length = 783 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tcttcctcctcctcctcgcct 150 ||||||||||||||||||||| Sbjct: 420 tcttcctcctcctcctcgcct 440
>dbj|AB260690.1| Oryza sativa (japonica cultivar-group) DNA, locus RLD28, clone:28SNP166Hime Length = 783 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tcttcctcctcctcctcgcct 150 ||||||||||||||||||||| Sbjct: 420 tcttcctcctcctcctcgcct 440
>dbj|AB260689.1| Oryza sativa (japonica cultivar-group) DNA, locus RLD28, clone:28SNP117Kake Length = 783 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tcttcctcctcctcctcgcct 150 ||||||||||||||||||||| Sbjct: 420 tcttcctcctcctcctcgcct 440
>dbj|AB260687.1| Oryza meridionalis DNA, locus RLD28, clone:28SNP108W1300 Length = 783 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tcttcctcctcctcctcgcct 150 ||||||||||||||||||||| Sbjct: 420 tcttcctcctcctcctcgcct 440
>dbj|AB260686.1| Oryza glumipatula DNA, locus RLD28, clone:28SNP102W1169 Length = 796 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tcttcctcctcctcctcgcct 150 ||||||||||||||||||||| Sbjct: 433 tcttcctcctcctcctcgcct 453
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 tcctcctcctcctcgcctgcc 153 ||||||||||||||||||||| Sbjct: 2121329 tcctcctcctcctcgcctgcc 2121309
>gb|DQ325539.1| Uncultured marine type-A Synechococcus GOM 3O6 rbcL-containing genomic sequence Length = 51091 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 acgccgccagcgcgcggcagc 220 ||||||||||||||||||||| Sbjct: 13448 acgccgccagcgcgcggcagc 13468
>gb|DQ284919.1| Uncultured marine type-A Synechococcus 4O4, partial genome fragment Length = 34854 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 acgccgccagcgcgcggcagc 220 ||||||||||||||||||||| Sbjct: 4765 acgccgccagcgcgcggcagc 4785
>ref|XM_001097362.1| PREDICTED: Macaca mulatta hypothetical protein LOC708860 (LOC708860), mRNA Length = 456 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 cctcctcctcgcctgccttcc 157 ||||||||||||||||||||| Sbjct: 302 cctcctcctcgcctgccttcc 282
>ref|XM_001099097.1| PREDICTED: Macaca mulatta pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3, transcript variant 1 (PLEKHA3), mRNA Length = 2764 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 cctcctcctcgcctgccttcc 157 ||||||||||||||||||||| Sbjct: 80 cctcctcctcgcctgccttcc 60
>ref|XM_001099197.1| PREDICTED: Macaca mulatta pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3, transcript variant 2 (PLEKHA3), mRNA Length = 2851 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 cctcctcctcgcctgccttcc 157 ||||||||||||||||||||| Sbjct: 64 cctcctcctcgcctgccttcc 44
>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome Length = 3059876 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 457 ctcttcactgctctcaacttg 477 ||||||||||||||||||||| Sbjct: 1245140 ctcttcactgctctcaacttg 1245120
>ref|NM_122278.3| Arabidopsis thaliana nucleotide binding (AT5G23730) mRNA, complete cds Length = 1397 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 cgtatcttcctcctcctcctc 146 ||||||||||||||||||||| Sbjct: 145 cgtatcttcctcctcctcctc 165
>gb|AC149292.15| Sus scrofa clone ch242-69g11, complete sequence Length = 215342 Score = 42.1 bits (21), Expect = 3.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 130 tcttcctcctcctcctcgcctgccttccc 158 ||||||||||||||||| ||| ||||||| Sbjct: 177653 tcttcctcctcctcctccccttccttccc 177681
>gb|AC114621.8| Mus musculus chromosome 3, clone RP24-93M7, complete sequence Length = 198404 Score = 42.1 bits (21), Expect = 3.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 667 atctgtactaaagtgaaatttataccctg 695 |||||||| |||||||||||| ||||||| Sbjct: 180273 atctgtaccaaagtgaaatttgtaccctg 180301
>gb|AC113988.8| Mus musculus chromosome 3, clone RP24-129H9, complete sequence Length = 181881 Score = 42.1 bits (21), Expect = 3.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 667 atctgtactaaagtgaaatttataccctg 695 |||||||| |||||||||||| ||||||| Sbjct: 166065 atctgtaccaaagtgaaatttgtaccctg 166037
>gb|AY661656.1| Sorghum bicolor clone BAC 88M4, complete sequence Length = 279448 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 tcctcctcctcgcctgccttc 156 ||||||||||||||||||||| Sbjct: 64465 tcctcctcctcgcctgccttc 64485
>gb|AC092214.3| Homo sapiens BAC clone RP11-811J9 from 7, complete sequence Length = 72045 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 ctgcctggaaggggcagaaag 256 ||||||||||||||||||||| Sbjct: 9224 ctgcctggaaggggcagaaag 9204
>gb|AC166542.2| Nectria haematococca clone JGIAYWI-5G16, complete sequence Length = 38385 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 tcttcctcctcctcctcgcct 150 ||||||||||||||||||||| Sbjct: 13634 tcttcctcctcctcctcgcct 13614
>gb|AY039941.1| Arabidopsis thaliana unknown protein (At5g23730) mRNA, complete cds Length = 1281 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 cgtatcttcctcctcctcctc 146 ||||||||||||||||||||| Sbjct: 62 cgtatcttcctcctcctcctc 82
>dbj|AK139274.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730089G01 product:Warning: possibly chimeric clone, full insert sequence Length = 3745 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 aagctgcctggaaggggcaga 253 ||||||||||||||||||||| Sbjct: 2702 aagctgcctggaaggggcaga 2682
>gb|AC010034.7| Drosophila melanogaster 3L BAC RP98-4A21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 154234 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 tcctcctcctcctcgcctgcc 153 ||||||||||||||||||||| Sbjct: 27561 tcctcctcctcctcgcctgcc 27541
>gb|AC091222.3| Drosophila melanogaster 3L BAC RP98-11G24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 144056 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 tcctcctcctcctcgcctgcc 153 ||||||||||||||||||||| Sbjct: 101537 tcctcctcctcctcgcctgcc 101517
>ref|XM_745659.1| Aspergillus fumigatus Af293 hypothetical protein (Afu6g08630) partial mRNA Length = 744 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tcttcctcctcctcctcgcct 150 ||||||||||||||||||||| Sbjct: 211 tcttcctcctcctcctcgcct 231
>gb|AC084430.13| Homo sapiens 12p BAC RP11-96B19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 72022 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 131 cttcctcctcctcctcgcctgcctt 155 |||||||||||||||||| |||||| Sbjct: 2414 cttcctcctcctcctcgcatgcctt 2390
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 atcttcctcctcctcctcgcc 149 ||||||||||||||||||||| Sbjct: 1863573 atcttcctcctcctcctcgcc 1863593
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 ttcctcctcctcctcgcctgc 152 ||||||||||||||||||||| Sbjct: 24304444 ttcctcctcctcctcgcctgc 24304424
>emb|AL513411.1|NCG65A3 Neurospora crassa DNA linkage group V Cosmid contig G65A3 Length = 62544 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 74 cgatggagaagggcaagggtctcgc 98 ||||||| ||||||||||||||||| Sbjct: 45313 cgatggacaagggcaagggtctcgc 45337
>emb|AL035695.17|HS404G5 Human DNA sequence from clone RP3-404G5 on chromosome 6q24.1-25.2 Contains the 5' end of the ESR1 gene for estrogen receptor 1, complete sequence Length = 119737 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 738 ttcgggtttgttatatttttc 758 ||||||||||||||||||||| Sbjct: 47961 ttcgggtttgttatatttttc 47981
>emb|Y00436.1|MMHOX23 Murine Hox 2.3 homeotic gene Length = 1713 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 tcttcctcctcctcctcgcct 150 ||||||||||||||||||||| Sbjct: 973 tcttcctcctcctcctcgcct 953
>emb|X06762.1|MMHOX23R Mouse Hox2.3 mRNA Length = 3554 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 tcttcctcctcctcctcgcct 150 ||||||||||||||||||||| Sbjct: 2814 tcttcctcctcctcctcgcct 2794
>emb|AL513462.1|NCB8L3 Neurospora crassa DNA linkage group V BAC contig B8L3 Length = 112716 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 74 cgatggagaagggcaagggtctcgc 98 ||||||| ||||||||||||||||| Sbjct: 112313 cgatggacaagggcaagggtctcgc 112289
>emb|AL592465.8| Mouse DNA sequence from clone RP23-36C4 on chromosome 11 Contains the Tbx4 gene for T-box 4, a ribosomal protein L21 (Rpl21) pseudogene and the 3' end of the Brip1 gene for BRCA1 interacting protein C-terminal helicase 1, complete sequence Length = 238358 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 aagctgcctggaaggggcaga 253 ||||||||||||||||||||| Sbjct: 202151 aagctgcctggaaggggcaga 202171
>ref|NM_001012848.1| Gallus gallus similar to hypothetical protein FLJ20533 (LOC420188), mRNA emb|AJ719740.1| Gallus gallus mRNA for hypothetical protein, clone 5o22 Length = 2098 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 572 aggttgaatatgctggtggag 592 ||||||||||||||||||||| Sbjct: 375 aggttgaatatgctggtggag 355
>dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0001H02 Length = 147160 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 atcttcctcctcctcctcgcc 149 ||||||||||||||||||||| Sbjct: 64051 atcttcctcctcctcctcgcc 64071
>dbj|AP005300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ2055_H10 Length = 119290 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 ttcctcctcctcctcgcctgc 152 ||||||||||||||||||||| Sbjct: 104832 ttcctcctcctcctcgcctgc 104812
>dbj|AP004747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0407A09 Length = 103788 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 ttcctcctcctcctcgcctgc 152 ||||||||||||||||||||| Sbjct: 33982 ttcctcctcctcctcgcctgc 33962
>dbj|AB005244.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRO11 Length = 82415 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 cgtatcttcctcctcctcctc 146 ||||||||||||||||||||| Sbjct: 3064 cgtatcttcctcctcctcctc 3084
>ref|XM_956156.1| Neurospora crassa OR74A hypothetical protein (NCU04258.1) partial mRNA Length = 5259 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 74 cgatggagaagggcaagggtctcgc 98 ||||||| ||||||||||||||||| Sbjct: 3188 cgatggacaagggcaagggtctcgc 3212
>emb|CR390141.1| Gallus gallus finished cDNA, clone ChEST165b10 Length = 801 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 572 aggttgaatatgctggtggag 592 ||||||||||||||||||||| Sbjct: 169 aggttgaatatgctggtggag 149
>dbj|AK104201.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-B05, full insert sequence Length = 912 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 tcttcctcctcctcctcgcct 150 ||||||||||||||||||||| Sbjct: 42 tcttcctcctcctcctcgcct 62
>dbj|AK103589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133C07, full insert sequence Length = 2413 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 129 atcttcctcctcctcctcgcc 149 ||||||||||||||||||||| Sbjct: 11 atcttcctcctcctcctcgcc 31
>gb|U81834.1|HSU81834 Human cosmid LL12NC01-95H4, ETV6 gene, exon 2 and partial cds Length = 36558 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 131 cttcctcctcctcctcgcctgcctt 155 |||||||||||||||||| |||||| Sbjct: 34200 cttcctcctcctcctcgcatgcctt 34224 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 175,591,451 Number of extensions: 10352593 Number of successful extensions: 582606 Number of sequences better than 10.0: 85 Number of HSP's gapped: 582595 Number of HSP's successfully gapped: 102 Length of query: 974 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 951 Effective length of database: 18,503,978,556 Effective search space: 17597283606756 Effective search space used: 17597283606756 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)