| Clone Name | FLbaf86k21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001050470.1| Oryza sativa (japonica cultivar-group) Os01g0691500 (Os01g0691500) mRNA, complete cds Length = 1640 Score = 1181 bits (596), Expect = 0.0 Identities = 983/1114 (88%), Gaps = 4/1114 (0%) Strand = Plus / Plus Query: 2 atccactcgtctcgagcccaagccgtcatctatctcgccggcggcgcctcccaggcggtc 61 |||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||||| || Sbjct: 76 atccactcatctcgcgcccaggccgtcatctacctcgccggcggcgcctcgcaggcgctc 135 Query: 62 ggttggctcctctccgtgcccggcgcttccggcagcgtactcgaggtcgtcgtaccctac 121 || ||||| || |||||||||||||| ||||||| ||| |||||||||||||| |||||| Sbjct: 136 gggtggctgctgtccgtgcccggcgcgtccggcaccgtcctcgaggtcgtcgtgccctac 195 Query: 122 tccagggcctccatggcgcagctgctcggcaagttgccgctgcaattcacgagtaagcag 181 |||| |||||||||||||||||||||||||||| |||| |||| ||||| || |||||| Sbjct: 196 tccatggcctccatggcgcagctgctcggcaagatgcccttgcagttcaccagcaagcag 255 Query: 182 gctgcagaggacatggcactggccgcgttcaaccgtgccctgaaactttctggaccaggt 241 || ||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||| Sbjct: 256 gccgcagaggacatggcattggccgcgttcaaccgcgccctcaagctttctggaccaggt 315 Query: 242 ctacaagtaatgggtgttggatttactgggtctctcgctagctcacgtccaaaacatggc 301 |||||||||||||||||||| || |||||||| || ||||||||||||||||||||||| Sbjct: 316 ctacaagtaatgggtgttggcttcactgggtcactggctagctcacgtccaaaacatggt 375 Query: 302 gaccacaggttttatgtgtcaacgcgcacacaaaattgcctcaggacatcacatgtaaca 361 || || ||||| ||||||||||| || ||||||||||||||||||||||||||||| ||| Sbjct: 376 gagcataggttctatgtgtcaacacgaacacaaaattgcctcaggacatcacatgttaca 435 Query: 362 ttgtcgaagggtttacggagcagagaggaagaagacaaggtctcaagctgctttgtgctt 421 ||||| ||||||||||||||||||||||||||||| || || ||||||| |||| |||| Sbjct: 436 ttgtcaaagggtttacggagcagagaggaagaagataaagtttcaagctactttctgctc 495 Query: 422 aaggcaatcgctgatgcatgcagagtttctgcaaccattcagtcagacgttcaagaacct 481 |||||||| || || | |||| |||| ||||||||||||||||||| |||||||||||| Sbjct: 496 aaggcaattgcagacggctgcaaagttcctgcaaccattcagtcagatgttcaagaacct 555 Query: 482 gaaattccaaaagaaagtgtggaacaatttgatgaagaccaagagctccagcaagttatt 541 ||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 556 gaacttccaaaagaaagcgtggaacaatttgatgaagaccaagaactccagcaagttatt 615 Query: 542 gatggtcaagtctgcatgaaagtataccactttgctgatccaacagaaaagaactttgac 601 ||||| ||||||||||||||||| || |||||| ||||| ||| || || ||||| || Sbjct: 616 gatgggcaagtctgcatgaaagtgtatcacttttctgattcaatggataaaaacttcaac 675 Query: 602 aggaaactaattctacctggttcattcaatcccttgcatgatggtcaccttaagttgtta 661 |||||| |||||||||||||||||||||||||| |||||||||| ||||||| | ||||| Sbjct: 676 aggaaaataattctacctggttcattcaatcccctgcatgatggacaccttaggctgtta 735 Query: 662 gaagttgcatcaagcatgtgtgatgatgggtttccgtgctttgagatatcagcaataaat 721 ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| Sbjct: 736 gaagttgcatcaagcatgtgtgatgatggtcttccatgctttgagatatcagcaatcaat 795 Query: 722 gccgacaaannnnnnntgtctattgcagaaattaagcgccgtgttgagcaattcagaaaa 781 ||||||||| | ||||| |||||||| |||||||| ||||||||||| |||||| Sbjct: 796 gccgacaaacctccactatctatcgcagaaatcaagcgccgggttgagcaatttagaaaa 855 Query: 782 gcagggaagaatgtggtcatatctaaccaaccatacttttataagaaggcagaacttttc 841 ||||||||||| | ||||||||||||||||||||||| ||||| || || || || Sbjct: 856 ----ggaagaatgtgataatatctaaccaaccatacttttacaagaaagcggagctattt 911 Query: 842 ccaggcagtgcttttataattggtgcagatactgcagctaggcttgtaaatcctaagtat 901 ||||||||||| ||| |||| |||||||| ||||||||||||||||| |||||||||||| Sbjct: 912 ccaggcagtgcatttgtaatcggtgcagacactgcagctaggcttgttaatcctaagtat 971 Query: 902 tatggaggtgactacaacagaatgctggagattcttcttgaatgtaaaagcactggcaca 961 ||||||||||| ||||| |||||||| ||||| ||||| |||||||||| ||| || ||| Sbjct: 972 tatggaggtgattacaatagaatgctagagatacttctcgaatgtaaaaacacaggtaca 1031 Query: 962 acatttctggttggtggtcgagagattgaaggagtattcaaggtccttgaagatttgaac 1021 |||||||| |||||||||||| | ||||||||||| ||||||||||||||||||||| || Sbjct: 1032 acatttcttgttggtggtcgaaatattgaaggagttttcaaggtccttgaagatttggac 1091 Query: 1022 attccaacagagttgaaggacatgtttatccctataccagaggagaagttccgcatagac 1081 |||||| ||||| | ||| ||||||||| ||||||||||||||||||| ||||| || Sbjct: 1092 attccagtcgagttaagggaaatgtttatctctataccagaggagaagtttcgcatggat 1151 Query: 1082 atttcatctactgaattaagaaaaagccaagggc 1115 ||||||||||| || ||||||||| ||||||| Sbjct: 1152 atttcatctacagatataagaaaaaaacaagggc 1185
>dbj|AK107426.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-A02, full insert sequence Length = 1640 Score = 1181 bits (596), Expect = 0.0 Identities = 983/1114 (88%), Gaps = 4/1114 (0%) Strand = Plus / Plus Query: 2 atccactcgtctcgagcccaagccgtcatctatctcgccggcggcgcctcccaggcggtc 61 |||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||||| || Sbjct: 76 atccactcatctcgcgcccaggccgtcatctacctcgccggcggcgcctcgcaggcgctc 135 Query: 62 ggttggctcctctccgtgcccggcgcttccggcagcgtactcgaggtcgtcgtaccctac 121 || ||||| || |||||||||||||| ||||||| ||| |||||||||||||| |||||| Sbjct: 136 gggtggctgctgtccgtgcccggcgcgtccggcaccgtcctcgaggtcgtcgtgccctac 195 Query: 122 tccagggcctccatggcgcagctgctcggcaagttgccgctgcaattcacgagtaagcag 181 |||| |||||||||||||||||||||||||||| |||| |||| ||||| || |||||| Sbjct: 196 tccatggcctccatggcgcagctgctcggcaagatgcccttgcagttcaccagcaagcag 255 Query: 182 gctgcagaggacatggcactggccgcgttcaaccgtgccctgaaactttctggaccaggt 241 || ||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||| Sbjct: 256 gccgcagaggacatggcattggccgcgttcaaccgcgccctcaagctttctggaccaggt 315 Query: 242 ctacaagtaatgggtgttggatttactgggtctctcgctagctcacgtccaaaacatggc 301 |||||||||||||||||||| || |||||||| || ||||||||||||||||||||||| Sbjct: 316 ctacaagtaatgggtgttggcttcactgggtcactggctagctcacgtccaaaacatggt 375 Query: 302 gaccacaggttttatgtgtcaacgcgcacacaaaattgcctcaggacatcacatgtaaca 361 || || ||||| ||||||||||| || ||||||||||||||||||||||||||||| ||| Sbjct: 376 gagcataggttctatgtgtcaacacgaacacaaaattgcctcaggacatcacatgttaca 435 Query: 362 ttgtcgaagggtttacggagcagagaggaagaagacaaggtctcaagctgctttgtgctt 421 ||||| ||||||||||||||||||||||||||||| || || ||||||| |||| |||| Sbjct: 436 ttgtcaaagggtttacggagcagagaggaagaagataaagtttcaagctactttctgctc 495 Query: 422 aaggcaatcgctgatgcatgcagagtttctgcaaccattcagtcagacgttcaagaacct 481 |||||||| || || | |||| |||| ||||||||||||||||||| |||||||||||| Sbjct: 496 aaggcaattgcagacggctgcaaagttcctgcaaccattcagtcagatgttcaagaacct 555 Query: 482 gaaattccaaaagaaagtgtggaacaatttgatgaagaccaagagctccagcaagttatt 541 ||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 556 gaacttccaaaagaaagcgtggaacaatttgatgaagaccaagaactccagcaagttatt 615 Query: 542 gatggtcaagtctgcatgaaagtataccactttgctgatccaacagaaaagaactttgac 601 ||||| ||||||||||||||||| || |||||| ||||| ||| || || ||||| || Sbjct: 616 gatgggcaagtctgcatgaaagtgtatcacttttctgattcaatggataaaaacttcaac 675 Query: 602 aggaaactaattctacctggttcattcaatcccttgcatgatggtcaccttaagttgtta 661 |||||| |||||||||||||||||||||||||| |||||||||| ||||||| | ||||| Sbjct: 676 aggaaaataattctacctggttcattcaatcccctgcatgatggacaccttaggctgtta 735 Query: 662 gaagttgcatcaagcatgtgtgatgatgggtttccgtgctttgagatatcagcaataaat 721 ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| Sbjct: 736 gaagttgcatcaagcatgtgtgatgatggtcttccatgctttgagatatcagcaatcaat 795 Query: 722 gccgacaaannnnnnntgtctattgcagaaattaagcgccgtgttgagcaattcagaaaa 781 ||||||||| | ||||| |||||||| |||||||| ||||||||||| |||||| Sbjct: 796 gccgacaaacctccactatctatcgcagaaatcaagcgccgggttgagcaatttagaaaa 855 Query: 782 gcagggaagaatgtggtcatatctaaccaaccatacttttataagaaggcagaacttttc 841 ||||||||||| | ||||||||||||||||||||||| ||||| || || || || Sbjct: 856 ----ggaagaatgtgataatatctaaccaaccatacttttacaagaaagcggagctattt 911 Query: 842 ccaggcagtgcttttataattggtgcagatactgcagctaggcttgtaaatcctaagtat 901 ||||||||||| ||| |||| |||||||| ||||||||||||||||| |||||||||||| Sbjct: 912 ccaggcagtgcatttgtaatcggtgcagacactgcagctaggcttgttaatcctaagtat 971 Query: 902 tatggaggtgactacaacagaatgctggagattcttcttgaatgtaaaagcactggcaca 961 ||||||||||| ||||| |||||||| ||||| ||||| |||||||||| ||| || ||| Sbjct: 972 tatggaggtgattacaatagaatgctagagatacttctcgaatgtaaaaacacaggtaca 1031 Query: 962 acatttctggttggtggtcgagagattgaaggagtattcaaggtccttgaagatttgaac 1021 |||||||| |||||||||||| | ||||||||||| ||||||||||||||||||||| || Sbjct: 1032 acatttcttgttggtggtcgaaatattgaaggagttttcaaggtccttgaagatttggac 1091 Query: 1022 attccaacagagttgaaggacatgtttatccctataccagaggagaagttccgcatagac 1081 |||||| ||||| | ||| ||||||||| ||||||||||||||||||| ||||| || Sbjct: 1092 attccagtcgagttaagggaaatgtttatctctataccagaggagaagtttcgcatggat 1151 Query: 1082 atttcatctactgaattaagaaaaagccaagggc 1115 ||||||||||| || ||||||||| ||||||| Sbjct: 1152 atttcatctacagatataagaaaaaaacaagggc 1185
>dbj|AK073675.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050M21, full insert sequence Length = 1559 Score = 763 bits (385), Expect = 0.0 Identities = 654/746 (87%) Strand = Plus / Plus Query: 370 gggtttacggagcagagaggaagaagacaaggtctcaagctgctttgtgcttaaggcaat 429 ||||||||||||||||||||||||||| || || ||||||| |||| |||| |||||||| Sbjct: 361 gggtttacggagcagagaggaagaagataaagtttcaagctactttctgctcaaggcaat 420 Query: 430 cgctgatgcatgcagagtttctgcaaccattcagtcagacgttcaagaacctgaaattcc 489 || || | |||| |||| ||||||||||||||||||| ||||||||||||||| |||| Sbjct: 421 tgcagacggctgcaaagttcctgcaaccattcagtcagatgttcaagaacctgaacttcc 480 Query: 490 aaaagaaagtgtggaacaatttgatgaagaccaagagctccagcaagttattgatggtca 549 ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 481 aaaagaaagcgtggaacaatttgatgaagaccaagaactccagcaagttattgatgggca 540 Query: 550 agtctgcatgaaagtataccactttgctgatccaacagaaaagaactttgacaggaaact 609 ||||||||||||||| || |||||| ||||| ||| || || ||||| |||||||| | Sbjct: 541 agtctgcatgaaagtgtatcacttttctgattcaatggataaaaacttcaacaggaaaat 600 Query: 610 aattctacctggttcattcaatcccttgcatgatggtcaccttaagttgttagaagttgc 669 ||||||||||||||||||||||||| |||||||||| ||||||| | | ||||||||||| Sbjct: 601 aattctacctggttcattcaatcccctgcatgatggacaccttaggctattagaagttgc 660 Query: 670 atcaagcatgtgtgatgatgggtttccgtgctttgagatatcagcaataaatgccgacaa 729 ||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| Sbjct: 661 atcaagcatgtgtgatgatggtcttccatgctttgagatatcagcaatcaatgccgacaa 720 Query: 730 annnnnnntgtctattgcagaaattaagcgccgtgttgagcaattcagaaaagcagggaa 789 | | ||||| |||||||| |||||||| ||||||||||| ||||||| |||||| Sbjct: 721 acctccactatctatcgcagaaatcaagcgccgggttgagcaatttagaaaagtagggaa 780 Query: 790 gaatgtggtcatatctaaccaaccatacttttataagaaggcagaacttttcccaggcag 849 ||||||| | ||||||||||||||||||||||| ||||| || || || || |||||||| Sbjct: 781 gaatgtgataatatctaaccaaccatacttttacaagaaagcggagctatttccaggcag 840 Query: 850 tgcttttataattggtgcagatactgcagctaggcttgtaaatcctaagtattatggagg 909 ||| ||| |||| |||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct: 841 tgcatttgtaatcggtgcagacactgcagctaggcttgttaatcctaagtattatggagg 900 Query: 910 tgactacaacagaatgctggagattcttcttgaatgtaaaagcactggcacaacatttct 969 ||| ||||| |||||||| ||||| ||||| |||||||||| ||| || ||||||||||| Sbjct: 901 tgattacaatagaatgctagagatacttctcgaatgtaaaaacacaggtacaacatttct 960 Query: 970 ggttggtggtcgagagattgaaggagtattcaaggtccttgaagatttgaacattccaac 1029 |||||||||||| | ||||||||||| ||||||||||||||||||||| |||||||| Sbjct: 961 tgttggtggtcgaaatattgaaggagttttcaaggtccttgaagatttggacattccagt 1020 Query: 1030 agagttgaaggacatgtttatccctataccagaggagaagttccgcatagacatttcatc 1089 ||||| | ||| ||||||||| ||||||||||||||||||| ||||| || |||||||| Sbjct: 1021 cgagttaagggaaatgtttatctctataccagaggagaagtttcgcatggatatttcatc 1080 Query: 1090 tactgaattaagaaaaagccaagggc 1115 ||| || ||||||||| ||||||| Sbjct: 1081 tacagatataagaaaaaaacaagggc 1106 Score = 363 bits (183), Expect = 1e-96 Identities = 270/299 (90%) Strand = Plus / Plus Query: 2 atccactcgtctcgagcccaagccgtcatctatctcgccggcggcgcctcccaggcggtc 61 |||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||||| || Sbjct: 64 atccactcatctcgcgcccaggccgtcatctacctcgccggcggcgcctcgcaggcgctc 123 Query: 62 ggttggctcctctccgtgcccggcgcttccggcagcgtactcgaggtcgtcgtaccctac 121 || ||||| || |||||||||||||| ||||||| ||| |||||||||||||| |||||| Sbjct: 124 gggtggctgctgtccgtgcccggcgcgtccggcaccgtcctcgaggtcgtcgtgccctac 183 Query: 122 tccagggcctccatggcgcagctgctcggcaagttgccgctgcaattcacgagtaagcag 181 |||| |||||||||||||||||||||||||||| |||| |||| ||||| || |||||| Sbjct: 184 tccatggcctccatggcgcagctgctcggcaagatgcccttgcagttcaccagcaagcag 243 Query: 182 gctgcagaggacatggcactggccgcgttcaaccgtgccctgaaactttctggaccaggt 241 || ||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||| Sbjct: 244 gccgcagaggacatggcattggccgcgttcaaccgcgccctcaagctttctggaccaggt 303 Query: 242 ctacaagtaatgggtgttggatttactgggtctctcgctagctcacgtccaaaacatgg 300 |||||||||||||||||||| || |||||||| || ||||||||||||||||||||||| Sbjct: 304 ctacaagtaatgggtgttggcttcactgggtcactggctagctcacgtccaaaacatgg 362
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 196 bits (99), Expect = 1e-46 Identities = 126/135 (93%) Strand = Plus / Minus Query: 440 tgcagagtttctgcaaccattcagtcagacgttcaagaacctgaaattccaaaagaaagt 499 |||| |||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct: 28537016 tgcaaagttcctgcaaccattcagtcagatgttcaagaacctgaacttccaaaagaaagc 28536957 Query: 500 gtggaacaatttgatgaagaccaagagctccagcaagttattgatggtcaagtctgcatg 559 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 28536956 gtggaacaatttgatgaagaccaagaactccagcaagttattgatgggcaagtctgcatg 28536897 Query: 560 aaagtataccacttt 574 ||||| || |||||| Sbjct: 28536896 aaagtgtatcacttt 28536882 Score = 131 bits (66), Expect = 7e-27 Identities = 93/102 (91%) Strand = Plus / Minus Query: 53 caggcggtcggttggctcctctccgtgcccggcgcttccggcagcgtactcgaggtcgtc 112 |||||| |||| ||||| || |||||||||||||| ||||||| ||| |||||||||||| Sbjct: 28538426 caggcgctcgggtggctgctgtccgtgcccggcgcgtccggcaccgtcctcgaggtcgtc 28538367 Query: 113 gtaccctactccagggcctccatggcgcagctgctcggcaag 154 || |||||||||| |||||||||||||||||||||||||||| Sbjct: 28538366 gtgccctactccatggcctccatggcgcagctgctcggcaag 28538325 Score = 129 bits (65), Expect = 3e-26 Identities = 101/113 (89%) Strand = Plus / Minus Query: 893 cctaagtattatggaggtgactacaacagaatgctggagattcttcttgaatgtaaaagc 952 |||||||||||||||||||| ||||| |||||||| ||||| ||||| |||||||||| | Sbjct: 28535573 cctaagtattatggaggtgattacaatagaatgctagagatacttctcgaatgtaaaaac 28535514 Query: 953 actggcacaacatttctggttggtggtcgagagattgaaggagtattcaaggt 1005 || || ||||||||||| |||||||||||| | ||||||||||| |||||||| Sbjct: 28535513 acaggtacaacatttcttgttggtggtcgaaatattgaaggagttttcaaggt 28535461 Score = 117 bits (59), Expect = 1e-22 Identities = 95/107 (88%) Strand = Plus / Minus Query: 782 gcagggaagaatgtggtcatatctaaccaaccatacttttataagaaggcagaacttttc 841 ||||||||||||||| | ||||||||||||||||||||||| ||||| || || || || Sbjct: 28535796 gcagggaagaatgtgataatatctaaccaaccatacttttacaagaaagcggagctattt 28535737 Query: 842 ccaggcagtgcttttataattggtgcagatactgcagctaggcttgt 888 ||||||||||| ||| |||| |||||||| ||||||||||||||||| Sbjct: 28535736 ccaggcagtgcatttgtaatcggtgcagacactgcagctaggcttgt 28535690 Score = 111 bits (56), Expect = 7e-21 Identities = 71/76 (93%) Strand = Plus / Minus Query: 600 acaggaaactaattctacctggttcattcaatcccttgcatgatggtcaccttaagttgt 659 |||||||| |||||||||||||||||||||||||| |||||||||| ||||||| | ||| Sbjct: 28536682 acaggaaaataattctacctggttcattcaatcccctgcatgatggacaccttaggctgt 28536623 Query: 660 tagaagttgcatcaag 675 |||||||||||||||| Sbjct: 28536622 tagaagttgcatcaag 28536607 Score = 103 bits (52), Expect = 2e-18 Identities = 93/109 (85%) Strand = Plus / Minus Query: 674 agcatgtgtgatgatgggtttccgtgctttgagatatcagcaataaatgccgacaaannn 733 ||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| Sbjct: 28536232 agcatgtgtgatgatggtcttccatgctttgagatatcagcaatcaatgccgacaaacct 28536173 Query: 734 nnnntgtctattgcagaaattaagcgccgtgttgagcaattcagaaaag 782 | ||||| |||||||| |||||||| ||||||||||| ||||||| Sbjct: 28536172 ccactatctatcgcagaaatcaagcgccgggttgagcaatttagaaaag 28536124 Score = 101 bits (51), Expect = 6e-18 Identities = 99/115 (86%) Strand = Plus / Minus Query: 1001 aaggtccttgaagatttgaacattccaacagagttgaaggacatgtttatccctatacca 1060 |||||||||||||||||| |||||||| ||||| | ||| ||||||||| |||||||| Sbjct: 28535384 aaggtccttgaagatttggacattccagtcgagttaagggaaatgtttatctctatacca 28535325 Query: 1061 gaggagaagttccgcatagacatttcatctactgaattaagaaaaagccaagggc 1115 ||||||||||| ||||| || ||||||||||| || ||||||||| ||||||| Sbjct: 28535324 gaggagaagtttcgcatggatatttcatctacagatataagaaaaaaacaagggc 28535270 Score = 95.6 bits (48), Expect = 4e-16 Identities = 60/64 (93%) Strand = Plus / Minus Query: 237 caggtctacaagtaatgggtgttggatttactgggtctctcgctagctcacgtccaaaac 296 ||||||||||||||||||||||||| || |||||||| || ||||||||||||||||||| Sbjct: 28537987 caggtctacaagtaatgggtgttggcttcactgggtcactggctagctcacgtccaaaac 28537928 Query: 297 atgg 300 |||| Sbjct: 28537927 atgg 28537924 Score = 95.6 bits (48), Expect = 4e-16 Identities = 72/80 (90%) Strand = Plus / Minus Query: 162 tgcaattcacgagtaagcaggctgcagaggacatggcactggccgcgttcaaccgtgccc 221 |||| ||||| || |||||||| ||||||||||||||| |||||||||||||||| |||| Sbjct: 28538156 tgcagttcaccagcaagcaggccgcagaggacatggcattggccgcgttcaaccgcgccc 28538097 Query: 222 tgaaactttctggaccaggt 241 | || ||||||||||||||| Sbjct: 28538096 tcaagctttctggaccaggt 28538077 Score = 87.7 bits (44), Expect = 9e-14 Identities = 59/64 (92%) Strand = Plus / Minus Query: 308 aggttttatgtgtcaacgcgcacacaaaattgcctcaggacatcacatgtaacattgtcg 367 ||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||| Sbjct: 28537590 aggttctatgtgtcaacacgaacacaaaattgcctcaggacatcacatgttacattgtca 28537531 Query: 368 aagg 371 |||| Sbjct: 28537530 aagg 28537527 Score = 69.9 bits (35), Expect = 2e-08 Identities = 50/55 (90%) Strand = Plus / Minus Query: 2 atccactcgtctcgagcccaagccgtcatctatctcgccggcggcgcctcccagg 56 |||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||| Sbjct: 28538606 atccactcatctcgcgcccaggccgtcatctacctcgccggcggcgcctcgcagg 28538552 Score = 65.9 bits (33), Expect = 3e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 369 agggtttacggagcagagaggaagaagacaaggtctcaagctgctttgtgcttaagg 425 |||||||||||||||||||||||||||| || || ||||||| |||| |||| |||| Sbjct: 28537315 agggtttacggagcagagaggaagaagataaagtttcaagctactttctgctcaagg 28537259 Score = 54.0 bits (27), Expect = 0.001 Identities = 48/55 (87%) Strand = Plus / Plus Query: 2 atccactcgtctcgagcccaagccgtcatctatctcgccggcggcgcctcccagg 56 |||||||| ||||| || || || |||||||| ||||||||| |||||||||||| Sbjct: 219386 atccactcatctcgcgcgcaggctgtcatctacctcgccggcagcgcctcccagg 219440
>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034C09 Length = 170226 Score = 196 bits (99), Expect = 1e-46 Identities = 126/135 (93%) Strand = Plus / Minus Query: 440 tgcagagtttctgcaaccattcagtcagacgttcaagaacctgaaattccaaaagaaagt 499 |||| |||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct: 63455 tgcaaagttcctgcaaccattcagtcagatgttcaagaacctgaacttccaaaagaaagc 63396 Query: 500 gtggaacaatttgatgaagaccaagagctccagcaagttattgatggtcaagtctgcatg 559 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 63395 gtggaacaatttgatgaagaccaagaactccagcaagttattgatgggcaagtctgcatg 63336 Query: 560 aaagtataccacttt 574 ||||| || |||||| Sbjct: 63335 aaagtgtatcacttt 63321 Score = 131 bits (66), Expect = 7e-27 Identities = 93/102 (91%) Strand = Plus / Minus Query: 53 caggcggtcggttggctcctctccgtgcccggcgcttccggcagcgtactcgaggtcgtc 112 |||||| |||| ||||| || |||||||||||||| ||||||| ||| |||||||||||| Sbjct: 64865 caggcgctcgggtggctgctgtccgtgcccggcgcgtccggcaccgtcctcgaggtcgtc 64806 Query: 113 gtaccctactccagggcctccatggcgcagctgctcggcaag 154 || |||||||||| |||||||||||||||||||||||||||| Sbjct: 64805 gtgccctactccatggcctccatggcgcagctgctcggcaag 64764 Score = 129 bits (65), Expect = 3e-26 Identities = 101/113 (89%) Strand = Plus / Minus Query: 893 cctaagtattatggaggtgactacaacagaatgctggagattcttcttgaatgtaaaagc 952 |||||||||||||||||||| ||||| |||||||| ||||| ||||| |||||||||| | Sbjct: 62012 cctaagtattatggaggtgattacaatagaatgctagagatacttctcgaatgtaaaaac 61953 Query: 953 actggcacaacatttctggttggtggtcgagagattgaaggagtattcaaggt 1005 || || ||||||||||| |||||||||||| | ||||||||||| |||||||| Sbjct: 61952 acaggtacaacatttcttgttggtggtcgaaatattgaaggagttttcaaggt 61900 Score = 117 bits (59), Expect = 1e-22 Identities = 95/107 (88%) Strand = Plus / Minus Query: 782 gcagggaagaatgtggtcatatctaaccaaccatacttttataagaaggcagaacttttc 841 ||||||||||||||| | ||||||||||||||||||||||| ||||| || || || || Sbjct: 62235 gcagggaagaatgtgataatatctaaccaaccatacttttacaagaaagcggagctattt 62176 Query: 842 ccaggcagtgcttttataattggtgcagatactgcagctaggcttgt 888 ||||||||||| ||| |||| |||||||| ||||||||||||||||| Sbjct: 62175 ccaggcagtgcatttgtaatcggtgcagacactgcagctaggcttgt 62129 Score = 111 bits (56), Expect = 7e-21 Identities = 71/76 (93%) Strand = Plus / Minus Query: 600 acaggaaactaattctacctggttcattcaatcccttgcatgatggtcaccttaagttgt 659 |||||||| |||||||||||||||||||||||||| |||||||||| ||||||| | ||| Sbjct: 63121 acaggaaaataattctacctggttcattcaatcccctgcatgatggacaccttaggctgt 63062 Query: 660 tagaagttgcatcaag 675 |||||||||||||||| Sbjct: 63061 tagaagttgcatcaag 63046 Score = 103 bits (52), Expect = 2e-18 Identities = 93/109 (85%) Strand = Plus / Minus Query: 674 agcatgtgtgatgatgggtttccgtgctttgagatatcagcaataaatgccgacaaannn 733 ||||||||||||||||| |||| |||||||||||||||||||| |||||||||||| Sbjct: 62671 agcatgtgtgatgatggtcttccatgctttgagatatcagcaatcaatgccgacaaacct 62612 Query: 734 nnnntgtctattgcagaaattaagcgccgtgttgagcaattcagaaaag 782 | ||||| |||||||| |||||||| ||||||||||| ||||||| Sbjct: 62611 ccactatctatcgcagaaatcaagcgccgggttgagcaatttagaaaag 62563 Score = 101 bits (51), Expect = 6e-18 Identities = 99/115 (86%) Strand = Plus / Minus Query: 1001 aaggtccttgaagatttgaacattccaacagagttgaaggacatgtttatccctatacca 1060 |||||||||||||||||| |||||||| ||||| | ||| ||||||||| |||||||| Sbjct: 61823 aaggtccttgaagatttggacattccagtcgagttaagggaaatgtttatctctatacca 61764 Query: 1061 gaggagaagttccgcatagacatttcatctactgaattaagaaaaagccaagggc 1115 ||||||||||| ||||| || ||||||||||| || ||||||||| ||||||| Sbjct: 61763 gaggagaagtttcgcatggatatttcatctacagatataagaaaaaaacaagggc 61709 Score = 95.6 bits (48), Expect = 4e-16 Identities = 60/64 (93%) Strand = Plus / Minus Query: 237 caggtctacaagtaatgggtgttggatttactgggtctctcgctagctcacgtccaaaac 296 ||||||||||||||||||||||||| || |||||||| || ||||||||||||||||||| Sbjct: 64426 caggtctacaagtaatgggtgttggcttcactgggtcactggctagctcacgtccaaaac 64367 Query: 297 atgg 300 |||| Sbjct: 64366 atgg 64363 Score = 95.6 bits (48), Expect = 4e-16 Identities = 72/80 (90%) Strand = Plus / Minus Query: 162 tgcaattcacgagtaagcaggctgcagaggacatggcactggccgcgttcaaccgtgccc 221 |||| ||||| || |||||||| ||||||||||||||| |||||||||||||||| |||| Sbjct: 64595 tgcagttcaccagcaagcaggccgcagaggacatggcattggccgcgttcaaccgcgccc 64536 Query: 222 tgaaactttctggaccaggt 241 | || ||||||||||||||| Sbjct: 64535 tcaagctttctggaccaggt 64516 Score = 87.7 bits (44), Expect = 9e-14 Identities = 59/64 (92%) Strand = Plus / Minus Query: 308 aggttttatgtgtcaacgcgcacacaaaattgcctcaggacatcacatgtaacattgtcg 367 ||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||| Sbjct: 64029 aggttctatgtgtcaacacgaacacaaaattgcctcaggacatcacatgttacattgtca 63970 Query: 368 aagg 371 |||| Sbjct: 63969 aagg 63966 Score = 69.9 bits (35), Expect = 2e-08 Identities = 50/55 (90%) Strand = Plus / Minus Query: 2 atccactcgtctcgagcccaagccgtcatctatctcgccggcggcgcctcccagg 56 |||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||| Sbjct: 65045 atccactcatctcgcgcccaggccgtcatctacctcgccggcggcgcctcgcagg 64991 Score = 65.9 bits (33), Expect = 3e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 369 agggtttacggagcagagaggaagaagacaaggtctcaagctgctttgtgcttaagg 425 |||||||||||||||||||||||||||| || || ||||||| |||| |||| |||| Sbjct: 63754 agggtttacggagcagagaggaagaagataaagtttcaagctactttctgctcaagg 63698
>dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0436E04 Length = 144644 Score = 54.0 bits (27), Expect = 0.001 Identities = 48/55 (87%) Strand = Plus / Plus Query: 2 atccactcgtctcgagcccaagccgtcatctatctcgccggcggcgcctcccagg 56 |||||||| ||||| || || || |||||||| ||||||||| |||||||||||| Sbjct: 61056 atccactcatctcgcgcgcaggctgtcatctacctcgccggcagcgcctcccagg 61110
>dbj|AK227787.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-35-K20 Length = 1400 Score = 52.0 bits (26), Expect = 0.005 Identities = 68/82 (82%) Strand = Plus / Plus Query: 824 aagaaggcagaacttttcccaggcagtgcttttataattggtgcagatactgcagctagg 883 ||||| || ||||| |||||||| || |||| |||||||||| ||||||||||| ||| Sbjct: 886 aagaaagctgaactcttcccaggaagcagttttgtaattggtgctgatactgcagcaagg 945 Query: 884 cttgtaaatcctaagtattatg 905 |||| ||||| ||||| |||| Sbjct: 946 attgttaatccaaagtactatg 967
>ref|NM_113677.3| Arabidopsis thaliana unknown protein (AT3G27610) mRNA, complete cds Length = 1396 Score = 52.0 bits (26), Expect = 0.005 Identities = 68/82 (82%) Strand = Plus / Plus Query: 824 aagaaggcagaacttttcccaggcagtgcttttataattggtgcagatactgcagctagg 883 ||||| || ||||| |||||||| || |||| |||||||||| ||||||||||| ||| Sbjct: 904 aagaaagctgaactcttcccaggaagcagttttgtaattggtgctgatactgcagcaagg 963 Query: 884 cttgtaaatcctaagtattatg 905 |||| ||||| ||||| |||| Sbjct: 964 attgttaatccaaagtactatg 985
>gb|BT006206.1| Arabidopsis thaliana At3g27610 mRNA, complete cds Length = 1170 Score = 52.0 bits (26), Expect = 0.005 Identities = 68/82 (82%) Strand = Plus / Plus Query: 824 aagaaggcagaacttttcccaggcagtgcttttataattggtgcagatactgcagctagg 883 ||||| || ||||| |||||||| || |||| |||||||||| ||||||||||| ||| Sbjct: 865 aagaaagctgaactcttcccaggaagcagttttgtaattggtgctgatactgcagcaagg 924 Query: 884 cttgtaaatcctaagtattatg 905 |||| ||||| ||||| |||| Sbjct: 925 attgttaatccaaagtactatg 946
>emb|BX822076.1|CNS0A72H Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB10ZA04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1306 Score = 52.0 bits (26), Expect = 0.005 Identities = 68/82 (82%) Strand = Plus / Plus Query: 824 aagaaggcagaacttttcccaggcagtgcttttataattggtgcagatactgcagctagg 883 ||||| || ||||| |||||||| || |||| |||||||||| ||||||||||| ||| Sbjct: 891 aagaaagctgaactcttcccaggaagcagttttgtaattggtgctgatactgcagcaagg 950 Query: 884 cttgtaaatcctaagtattatg 905 |||| ||||| ||||| |||| Sbjct: 951 attgttaatccaaagtactatg 972
>emb|BX823649.1|CNS0A4WI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS61ZB06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1407 Score = 52.0 bits (26), Expect = 0.005 Identities = 68/82 (82%) Strand = Plus / Plus Query: 824 aagaaggcagaacttttcccaggcagtgcttttataattggtgcagatactgcagctagg 883 ||||| || ||||| |||||||| || |||| |||||||||| ||||||||||| ||| Sbjct: 905 aagaaagctgaactcttcccaggaagcagttttgtaattggtgctgatactgcagcaagg 964 Query: 884 cttgtaaatcctaagtattatg 905 |||| ||||| ||||| |||| Sbjct: 965 attgttaatccaaagtactatg 986
>ref|XM_514591.2| PREDICTED: Pan troglodytes RNA binding protein (autoantigenic, hnRNP-associated with lethal yellow) (RALY), mRNA Length = 4628 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1516 ctgcagaggacatggcactggc 1495
>dbj|AK226085.1| Homo sapiens mRNA for RNA binding protein (autoantigenic, hnRNP-associated with lethal yellow) short isoform variant, clone: bm02760 Length = 1701 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1514 ctgcagaggacatggcactggc 1493
>gb|BC088727.1| Homo sapiens cDNA clone IMAGE:6285074, **** WARNING: chimeric clone **** Length = 6776 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 6527 ctgcagaggacatggcactggc 6506
>ref|NM_007367.2| Homo sapiens RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)) (RALY), transcript variant 2, mRNA Length = 1541 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1338 ctgcagaggacatggcactggc 1317
>ref|NM_126183.2| Arabidopsis thaliana unknown protein (AT2G01220) mRNA, complete cds Length = 1383 Score = 44.1 bits (22), Expect = 1.3 Identities = 28/30 (93%) Strand = Plus / Plus Query: 701 tttgagatatcagcaataaatgccgacaaa 730 ||||| ||||| |||||||||||||||||| Sbjct: 761 tttgaaatatccgcaataaatgccgacaaa 790
>ref|NM_179589.2| Arabidopsis thaliana unknown protein (AT2G01220) mRNA, complete cds Length = 1406 Score = 44.1 bits (22), Expect = 1.3 Identities = 28/30 (93%) Strand = Plus / Plus Query: 701 tttgagatatcagcaataaatgccgacaaa 730 ||||| ||||| |||||||||||||||||| Sbjct: 764 tttgaaatatccgcaataaatgccgacaaa 793
>gb|BC103753.1| Homo sapiens RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)), mRNA (cDNA clone MGC:117312 IMAGE:6182358), complete cds Length = 1614 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1410 ctgcagaggacatggcactggc 1389
>gb|AY635580.1| Homo sapiens breast cancer antigen 10829 mRNA, partial sequence Length = 739 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 643 ctgcagaggacatggcactggc 622
>gb|BT000350.1| Arabidopsis thaliana unknown protein (At2g01220At2g01230) mRNA, complete cds Length = 1057 Score = 44.1 bits (22), Expect = 1.3 Identities = 28/30 (93%) Strand = Plus / Plus Query: 701 tttgagatatcagcaataaatgccgacaaa 730 ||||| ||||| |||||||||||||||||| Sbjct: 739 tttgaaatatccgcaataaatgccgacaaa 768
>gb|AC113409.2| Homo sapiens chromosome 5 clone RP11-483H11, complete sequence Length = 157208 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 940 tgaatgtaaaagcactggcaca 961 |||||||||||||||||||||| Sbjct: 26527 tgaatgtaaaagcactggcaca 26506
>gb|AY120748.1| Arabidopsis thaliana unknown protein (At2g01220:At2g01230) mRNA, complete cds Length = 1316 Score = 44.1 bits (22), Expect = 1.3 Identities = 28/30 (93%) Strand = Plus / Plus Query: 701 tttgagatatcagcaataaatgccgacaaa 730 ||||| ||||| |||||||||||||||||| Sbjct: 752 tttgaaatatccgcaataaatgccgacaaa 781
>emb|CR388100.7| Zebrafish DNA sequence from clone DKEY-126H23 in linkage group 19, complete sequence Length = 138214 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 224 aaactttctggaccaggtctac 245 |||||||||||||||||||||| Sbjct: 132316 aaactttctggaccaggtctac 132295
>gb|AC006200.3| Arabidopsis thaliana chromosome 2 clone F10A8 map rga, complete sequence Length = 94029 Score = 44.1 bits (22), Expect = 1.3 Identities = 28/30 (93%) Strand = Plus / Plus Query: 701 tttgagatatcagcaataaatgccgacaaa 730 ||||| ||||| |||||||||||||||||| Sbjct: 34895 tttgaaatatccgcaataaatgccgacaaa 34924
>dbj|AK222915.1| Homo sapiens mRNA for RNA binding protein (autoantigenic, hnRNP-associated with lethal yellow) long isoform variant, clone: HRC04171 Length = 1553 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1349 ctgcagaggacatggcactggc 1328
>emb|AL031668.23|HS64K7 Human DNA sequence from clone RP1-64K7 on chromosome 20q11.21-11.23 Contains the EIF2S2 gene for eukaryotic translation initiation factor 2 subunit 2 (beta, 38kD), a novel gene, the 5' end of a novel gene, the 3' end of the RALY gene for RNA binding protein (autoantigenic, hnRNP-associated with lethal yellow), the RPS2P1 gene for ribosomal protein S2 pseudogene 1 and two CpG islands, complete sequence Length = 139378 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 63858 ctgcagaggacatggcactggc 63837
>gb|AC068658.4| Homo sapiens chromosome 5 clone CTC-228N24, complete sequence Length = 128928 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 940 tgaatgtaaaagcactggcaca 961 |||||||||||||||||||||| Sbjct: 26296 tgaatgtaaaagcactggcaca 26317
>gb|AY084877.1| Arabidopsis thaliana clone 120069 mRNA, complete sequence Length = 1331 Score = 44.1 bits (22), Expect = 1.3 Identities = 28/30 (93%) Strand = Plus / Plus Query: 701 tttgagatatcagcaataaatgccgacaaa 730 ||||| ||||| |||||||||||||||||| Sbjct: 760 tttgaaatatccgcaataaatgccgacaaa 789
>emb|CR626560.1| full-length cDNA clone CS0DG001YC07 of B cells (Ramos cell line) of Homo sapiens (human) Length = 733 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 544 ctgcagaggacatggcactggc 523
>emb|CR626461.1| full-length cDNA clone CS0DC024YD16 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 951 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 762 ctgcagaggacatggcactggc 741
>emb|CR625534.1| full-length cDNA clone CS0DF038YF22 of Fetal brain of Homo sapiens (human) Length = 1706 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1568 ctgcagaggacatggcactggc 1547
>emb|CR623593.1| full-length cDNA clone CS0DI008YM07 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 466 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 277 ctgcagaggacatggcactggc 256
>emb|CR620280.1| full-length cDNA clone CS0DL002YO08 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1547 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1387 ctgcagaggacatggcactggc 1366
>emb|CR599587.1| full-length cDNA clone CS0DI033YM20 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1495 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1340 ctgcagaggacatggcactggc 1319
>emb|CR617105.1| full-length cDNA clone CS0DI075YL22 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1501 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1341 ctgcagaggacatggcactggc 1320
>emb|CR615528.1| full-length cDNA clone CS0DI063YA17 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1516 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1352 ctgcagaggacatggcactggc 1331
>emb|CR615132.1| full-length cDNA clone CS0DI081YO16 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1553 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1389 ctgcagaggacatggcactggc 1368
>emb|CR614904.1| full-length cDNA clone CS0DF007YF13 of Fetal brain of Homo sapiens (human) Length = 1574 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1415 ctgcagaggacatggcactggc 1394
>emb|CR613686.1| full-length cDNA clone CS0DK010YB22 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1667 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1526 ctgcagaggacatggcactggc 1505
>emb|CR613485.1| full-length cDNA clone CS0DK005YP23 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1791 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1633 ctgcagaggacatggcactggc 1612
>emb|CR612346.1| full-length cDNA clone CS0DA008YF04 of Neuroblastoma of Homo sapiens (human) Length = 1694 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1535 ctgcagaggacatggcactggc 1514
>emb|CR611602.1| full-length cDNA clone CS0DC018YL07 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1341 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1181 ctgcagaggacatggcactggc 1160
>emb|CR609461.1| full-length cDNA clone CS0DK006YE09 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1713 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1574 ctgcagaggacatggcactggc 1553
>emb|CR606402.1| full-length cDNA clone CS0DI064YN17 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1501 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1342 ctgcagaggacatggcactggc 1321
>emb|CR604151.1| full-length cDNA clone CS0DI007YH05 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1744 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1605 ctgcagaggacatggcactggc 1584
>emb|CR603257.1| full-length cDNA clone CS0DB001YP12 of Neuroblastoma Cot 10-normalized of Homo sapiens (human) Length = 1694 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1537 ctgcagaggacatggcactggc 1516
>emb|CR600862.1| full-length cDNA clone CS0DI064YP08 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1479 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1349 ctgcagaggacatggcactggc 1328
>emb|CR599150.1| full-length cDNA clone CS0DA010YJ20 of Neuroblastoma of Homo sapiens (human) Length = 1769 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1599 ctgcagaggacatggcactggc 1578
>emb|CR596751.1| full-length cDNA clone CS0DC028YL10 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1593 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1448 ctgcagaggacatggcactggc 1427
>emb|CR597090.1| full-length cDNA clone CS0DK010YO17 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1548 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1389 ctgcagaggacatggcactggc 1368
>emb|CR596021.1| full-length cDNA clone CS0DI057YH17 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1533 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1359 ctgcagaggacatggcactggc 1338
>emb|CR595464.1| full-length cDNA clone CS0DM001YD17 of Fetal liver of Homo sapiens (human) Length = 1577 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1435 ctgcagaggacatggcactggc 1414
>dbj|AK176608.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-13-I07 Length = 1457 Score = 44.1 bits (22), Expect = 1.3 Identities = 28/30 (93%) Strand = Plus / Plus Query: 701 tttgagatatcagcaataaatgccgacaaa 730 ||||| ||||| |||||||||||||||||| Sbjct: 762 tttgaaatatccgcaataaatgccgacaaa 791
>dbj|AK176125.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-92-I05 Length = 1397 Score = 44.1 bits (22), Expect = 1.3 Identities = 28/30 (93%) Strand = Plus / Plus Query: 701 tttgagatatcagcaataaatgccgacaaa 730 ||||| ||||| |||||||||||||||||| Sbjct: 764 tttgaaatatccgcaataaatgccgacaaa 793
>dbj|AK118433.1| Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL19-68-E20 Length = 1387 Score = 44.1 bits (22), Expect = 1.3 Identities = 28/30 (93%) Strand = Plus / Plus Query: 701 tttgagatatcagcaataaatgccgacaaa 730 ||||| ||||| |||||||||||||||||| Sbjct: 764 tttgaaatatccgcaataaatgccgacaaa 793
>gb|AC007767.3|F5D14 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence Length = 127462 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 473 caagaacctgaaattccaaaag 494 |||||||||||||||||||||| Sbjct: 78121 caagaacctgaaattccaaaag 78142
>emb|BX842449.1|CNS0A8WG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB71ZB09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1410 Score = 44.1 bits (22), Expect = 1.3 Identities = 28/30 (93%) Strand = Plus / Plus Query: 701 tttgagatatcagcaataaatgccgacaaa 730 ||||| ||||| |||||||||||||||||| Sbjct: 888 tttgaaatatccgcaataaatgccgacaaa 917
>emb|BX842433.1|CNS0A8HW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS3ZF07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1398 Score = 44.1 bits (22), Expect = 1.3 Identities = 28/30 (93%) Strand = Plus / Plus Query: 701 tttgagatatcagcaataaatgccgacaaa 730 ||||| ||||| |||||||||||||||||| Sbjct: 756 tttgaaatatccgcaataaatgccgacaaa 785
>ref|NM_016732.1| Homo sapiens RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)) (RALY), transcript variant 1, mRNA gb|AF148457.1|AF148457 Homo sapiens heterogeneous nuclear ribonucleoprotein, alternate transcript (RALY) mRNA, complete cds Length = 1589 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1386 ctgcagaggacatggcactggc 1365
>gb|AC007015.1|AC007015 Homo sapiens chromosome 5q, Bac clone 89n19 (LBNL h200) and 361j5 (LBNL h205), complete sequence Length = 56918 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 940 tgaatgtaaaagcactggcaca 961 |||||||||||||||||||||| Sbjct: 33714 tgaatgtaaaagcactggcaca 33693
>gb|L38696.1|HUMAUAG Homo sapiens autoantigen p542 mRNA, complete cds Length = 1422 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 ctgcagaggacatggcactggc 204 |||||||||||||||||||||| Sbjct: 1219 ctgcagaggacatggcactggc 1198
>ref|NM_100161.1| Arabidopsis thaliana unknown protein (AT1G02813) mRNA, complete cds Length = 612 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 577 tgatccaacagaaaagaactttgac 601 |||||||| |||||||||||||||| Sbjct: 402 tgatccaaaagaaaagaactttgac 378
>gb|AC107274.11| Rattus norvegicus 18 BAC CH230-207M17 (Children's Hospital Oakland Research Institute) complete sequence Length = 217066 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 582 caacagaaaagaactttgaca 602 ||||||||||||||||||||| Sbjct: 34765 caacagaaaagaactttgaca 34785
>gb|AC009525.3| Arabidopsis thaliana chromosome I BAC F22D16 genomic sequence, complete sequence Length = 100239 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 577 tgatccaacagaaaagaactttgac 601 |||||||| |||||||||||||||| Sbjct: 71398 tgatccaaaagaaaagaactttgac 71422
>emb|Z84486.1|HS528L19 Human DNA sequence from clone RP3-528L19 on chromosome 6q23 Contains part of the SGK gene for serum/glucocorticoid regulated kinase, complete sequence Length = 87013 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 886 tgtaaatcctaagtattatgg 906 ||||||||||||||||||||| Sbjct: 15876 tgtaaatcctaagtattatgg 15896
>gb|AY085622.1| Arabidopsis thaliana clone 1632 mRNA, complete sequence Length = 612 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 577 tgatccaacagaaaagaactttgac 601 |||||||| |||||||||||||||| Sbjct: 402 tgatccaaaagaaaagaactttgac 378
>gb|AC153921.5| Mus musculus 10 BAC RP23-89C21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 212543 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1221 caatgcaaataataattgtta 1241 ||||||||||||||||||||| Sbjct: 83254 caatgcaaataataattgtta 83274
>dbj|AB018114.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGF10 Length = 84702 Score = 42.1 bits (21), Expect = 5.0 Identities = 54/65 (83%) Strand = Plus / Minus Query: 824 aagaaggcagaacttttcccaggcagtgcttttataattggtgcagatactgcagctagg 883 ||||| || ||||| |||||||| || |||| |||||||||| ||||||||||| ||| Sbjct: 1121 aagaaagctgaactcttcccaggaagcagttttgtaattggtgctgatactgcagcaagg 1062 Query: 884 cttgt 888 |||| Sbjct: 1061 attgt 1057
>gb|AF045467.1|AF045467 Chlamydomonas reinhardtii Ac115p (AC115) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1079 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 863 ggtgcagatactgcagctaggcttg 887 ||||| ||||||||||||||||||| Sbjct: 852 ggtgccgatactgcagctaggcttg 876 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 251,719,366 Number of extensions: 13574252 Number of successful extensions: 304533 Number of sequences better than 10.0: 69 Number of HSP's gapped: 304531 Number of HSP's successfully gapped: 98 Length of query: 1324 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1301 Effective length of database: 18,503,978,556 Effective search space: 24073676101356 Effective search space used: 24073676101356 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)