>Q39236:T2AG_ARATH Transcription initiation factor IIA gamma chain - Arabidopsis|
           thaliana (Mouse-ear cress)
          Length = 106
 Score = 42.4 bits (98), Expect = 0.007
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
 Frame = +3

Query: 459 FELYWQSAIGKALMK*LDEMV----LRPDLAISVQVLFDEFMSTGQPAQEQGLLQGTNHN 626
           FELY +S IG  L + LDEMV    L P+LAI V V FD+ M+    +Q +  +    H 
Sbjct: 4   FELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHL 63

Query: 627 ATSIFC 644
            T  FC
Sbjct: 64  HTYRFC 69

>Q94HL5:T2AG_ORYSA Transcription initiation factor IIA gamma chain - Oryza sativa|
           (Rice)
          Length = 106

 Score = 42.0 bits (97), Expect = 0.009
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = +3

Query: 459 FELYWQSAIGKALMK*LDEMV----LRPDLAISVQVLFDEFMSTGQPAQEQGLLQGTNHN 626
           FELY +S IG  L + LDEMV    L P+LAI V V FD+ M+     Q +  +    H 
Sbjct: 4   FELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIKGHL 63

Query: 627 ATSIFC 644
            T  FC
Sbjct: 64  HTYRFC 69

>Q66X03:NAL9A_MOUSE NACHT, LRR and PYD domains-containing protein 9A - Mus musculus|
            (Mouse)
          Length = 949

 Score = 38.5 bits (88), Expect = 0.099
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
 Frame = +2

Query: 1598 LQALLVNITIHECYF----GD*HHSNMILAFVILRYGGIIIFSYFHANTFNVFCSMFNNS 1765
            L +LL  I + EC      G+   SN+I    +L+Y   II S F   T  ++C  F N+
Sbjct: 254  LSSLLQKIMLPECSLLLELGNASLSNII---PLLQYPREIIMSGFSEQTIEIYCVSFFNT 310

Query: 1766 H*SINVF*DVFSLQKLEN---CNFMCTEACKTI 1855
               + +F ++ S++ L N   C  +C   C TI
Sbjct: 311  QTGVEIFKNLKSIKPLFNLCRCPHLCWMICSTI 343

>Q87EX9:PUR7_XYLFT Phosphoribosylaminoimidazole-succinocarboxamide synthase - Xylella|
            fastidiosa (strain Temecula1 / ATCC 700964)
          Length = 308

 Score = 33.9 bits (76), Expect = 2.4
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
 Frame = -1

Query: 1495 RIRLFSICYIDQFVG---IMTKISNYWMRLFSVCKTDHLSPNNHKAIK----LLDGMNDG 1337
            R+  F +   D   G   I+ +ISN+W +     KT+HL PN+   I     L DG++  
Sbjct: 49   RLSAFDVVLPDPIPGKGEILCQISNFWFQ-----KTEHLMPNHLTGINVASVLPDGIDKT 103

Query: 1336 KYLARAIRLK 1307
             Y+ RA+  K
Sbjct: 104  LYIQRAVVTK 113

>Q80ZD0:GBB5_TAMST Guanine nucleotide-binding protein subunit beta 5 - Tamias striatus|
           (Eastern chipmunk)
          Length = 353

 Score = 33.1 bits (74), Expect = 4.2
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
 Frame = -2

Query: 831 IACGDLENKCAVE*LT-----SLLSTRATIIKHTSHLHQYHYTN 715
           IACG L+NKC+V  LT     ++ + + ++  HT++L    +TN
Sbjct: 120 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN 163

>P62882:GBB5_RAT Guanine nucleotide-binding protein subunit beta 5 - Rattus|
           norvegicus (Rat)
          Length = 353

 Score = 33.1 bits (74), Expect = 4.2
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
 Frame = -2

Query: 831 IACGDLENKCAVE*LT-----SLLSTRATIIKHTSHLHQYHYTN 715
           IACG L+NKC+V  LT     ++ + + ++  HT++L    +TN
Sbjct: 120 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN 163

>Q6PNB6:GBB5_RABIT Guanine nucleotide-binding protein subunit beta 5 - Oryctolagus|
           cuniculus (Rabbit)
          Length = 353

 Score = 33.1 bits (74), Expect = 4.2
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
 Frame = -2

Query: 831 IACGDLENKCAVE*LT-----SLLSTRATIIKHTSHLHQYHYTN 715
           IACG L+NKC+V  LT     ++ + + ++  HT++L    +TN
Sbjct: 120 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN 163

>Q5RDY7:GBB5_PONPY Guanine nucleotide-binding protein subunit beta 5 - Pongo pygmaeus|
           (Orangutan)
          Length = 353

 Score = 33.1 bits (74), Expect = 4.2
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
 Frame = -2

Query: 831 IACGDLENKCAVE*LT-----SLLSTRATIIKHTSHLHQYHYTN 715
           IACG L+NKC+V  LT     ++ + + ++  HT++L    +TN
Sbjct: 120 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN 163

>P62881:GBB5_MOUSE Guanine nucleotide-binding protein subunit beta 5 - Mus musculus|
           (Mouse)
          Length = 395

 Score = 33.1 bits (74), Expect = 4.2
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
 Frame = -2

Query: 831 IACGDLENKCAVE*LT-----SLLSTRATIIKHTSHLHQYHYTN 715
           IACG L+NKC+V  LT     ++ + + ++  HT++L    +TN
Sbjct: 162 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN 205

>O14775:GBB5_HUMAN Guanine nucleotide-binding protein subunit beta 5 - Homo sapiens|
           (Human)
          Length = 395

 Score = 33.1 bits (74), Expect = 4.2
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
 Frame = -2

Query: 831 IACGDLENKCAVE*LT-----SLLSTRATIIKHTSHLHQYHYTN 715
           IACG L+NKC+V  LT     ++ + + ++  HT++L    +TN
Sbjct: 162 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN 205

>Q9PGU3:PUR7_XYLFA Phosphoribosylaminoimidazole-succinocarboxamide synthase - Xylella|
            fastidiosa
          Length = 308

 Score = 32.7 bits (73), Expect = 5.5
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
 Frame = -1

Query: 1495 RIRLFSICYIDQFVG---IMTKISNYWMRLFSVCKTDHLSPNNHKAIK----LLDGMNDG 1337
            R+  F +   D   G   I+ +ISN+W +     KT+HL PN+   I     L DG++  
Sbjct: 49   RLSAFDVVLPDPIPGKGEILCQISNFWFQ-----KTEHLMPNHLTGINVASVLPDGIDKT 103

Query: 1336 KYLARAIRLK 1307
             Y  RA+  K
Sbjct: 104  LYTQRAVVTK 113

>Q9IA78:T2AG_PAROL Transcription initiation factor IIA gamma chain - Paralichthys|
           olivaceus (Japanese flounder)
          Length = 111

 Score = 32.3 bits (72), Expect = 7.1
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +3

Query: 456 AFELYWQSAIGKALMK*LDEMV----LRPDLAISVQVLFDEFMSTGQPAQEQGLLQGTNH 623
           A++LY  + +G +L + LDE++    + P LA+ V + FD+ ++T   ++ +  +     
Sbjct: 2   AYQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALASRVRNRVNFRGS 61

Query: 624 NATSIFC 644
             T  FC
Sbjct: 62  LNTYRFC 68


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 314,514,610
Number of extensions: 6656679
Number of successful extensions: 13032
Number of sequences better than 10.0: 12
Number of HSP's gapped: 13029
Number of HSP's successfully gapped: 12
Length of query: 632
Length of database: 100,686,439
Length adjustment: 119
Effective length of query: 513
Effective length of database: 68,045,334
Effective search space: 34907256342
Effective search space used: 34907256342
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)