ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf83n15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P13983:EXTN_TOBAC Extensin precursor - Nicotiana tabacum (Common... 32 3.8

>P13983:EXTN_TOBAC Extensin precursor - Nicotiana tabacum (Common tobacco)|
          Length = 620
 Score = 32.0 bits (71), Expect = 3.8
 Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
 Frame = -3

Query: 469 TPVAIANCPVPPTIAHSPPS-VGTPMTSNVDPLNHSFWNTMVKVLCQSPAWECRPCT--- 302
           +P +  + P PPT  H+PP+    P T    PL H         L  SP  + +P T   
Sbjct: 217 SPPSRGHQPQPPTHRHAPPTHRHAPPTHQPSPLRH---------LPPSPRRQPQPPTYSP 267

Query: 301 --RATMVASGPSPSYNDQLLTAVSPKPPSWITS 209
              A   +  PSP+Y+    T  SP PPS I S
Sbjct: 268 PPPAYAQSPQPSPTYSPPPPT-YSPPPPSPIYS 299


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 178,505,776
Number of extensions: 4152870
Number of successful extensions: 11050
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11031
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 100,686,439
Length adjustment: 113
Effective length of query: 203
Effective length of database: 69,691,104
Effective search space: 14147294112
Effective search space used: 14147294112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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