| Clone Name | FLbaf80h08 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT835631.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA047G15, full insert sequence Length = 837 Score = 127 bits (64), Expect = 7e-26 Identities = 163/196 (83%) Strand = Plus / Plus Query: 360 acgggaagcgcgtcatcgtcgaggcttgcacccagtgccaacagttcaagagaagagctt 419 ||||||||||| || | || ||||| ||||| || ||| ||||||||||| |||||| Sbjct: 289 acgggaagcgcatcgttgtggaggcatgcactcaatgcagacagttcaagattagagctg 348 Query: 420 taaaggtgaaggaggatcttgaaagtgctgtccctggggtttctgtgacgatcaaccctg 479 ||||| ||||||||||| |||||| |||| |||||||| || ||| |||||||||| Sbjct: 349 cgaaggtaaaggaggatctggaaagttctgttcctggggtatccgtggtaatcaaccctg 408 Query: 480 aaaagccacgccgtggatgccttgagataagggaggaaggtggtgatgtgttcatttcac 539 |||||||||| ||||| ||| | ||||| | |||||||||||||| |||||||| || | Sbjct: 409 aaaagccacgacgtggttgcttggagattcgtgaggaaggtggtgaagtgttcatatcgc 468 Query: 540 tgctgaacatgccacg 555 |||||||||||||||| Sbjct: 469 tgctgaacatgccacg 484 Score = 50.1 bits (25), Expect = 0.013 Identities = 46/53 (86%) Strand = Plus / Plus Query: 104 aggatgacccggagcatggccgccgggaagcggggcgccgacgctccggccaa 156 |||| ||| ||||||||||||| ||| |||| | ||||||| ||||||||||| Sbjct: 111 aggaagacacggagcatggccgtcggtaagcagcgcgccgaggctccggccaa 163 Score = 48.1 bits (24), Expect = 0.051 Identities = 27/28 (96%) Strand = Plus / Plus Query: 44 gcgatgcctcccaagcgcaagtccccgg 71 ||||||||||| |||||||||||||||| Sbjct: 57 gcgatgcctcctaagcgcaagtccccgg 84 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 196 gcagaaggggaggaagaaggccaagaa 222 ||||||||||||||||| ||||||||| Sbjct: 206 gcagaaggggaggaagagggccaagaa 232
>ref|NM_001075073.1| Oryza sativa (japonica cultivar-group) Os11g0704000 (Os11g0704000) mRNA, complete cds Length = 495 Score = 127 bits (64), Expect = 7e-26 Identities = 163/196 (83%) Strand = Plus / Plus Query: 360 acgggaagcgcgtcatcgtcgaggcttgcacccagtgccaacagttcaagagaagagctt 419 ||||||||||| || | || ||||| ||||| || ||| ||||||||||| |||||| Sbjct: 230 acgggaagcgcatcgttgtggaggcatgcactcaatgcagacagttcaagattagagctg 289 Query: 420 taaaggtgaaggaggatcttgaaagtgctgtccctggggtttctgtgacgatcaaccctg 479 ||||| ||||||||||| |||||| |||| |||||||| || ||| |||||||||| Sbjct: 290 cgaaggtaaaggaggatctggaaagttctgttcctggggtatccgtggtaatcaaccctg 349 Query: 480 aaaagccacgccgtggatgccttgagataagggaggaaggtggtgatgtgttcatttcac 539 |||||||||| ||||| ||| | ||||| | |||||||||||||| |||||||| || | Sbjct: 350 aaaagccacgacgtggttgcttggagattcgtgaggaaggtggtgaagtgttcatatcgc 409 Query: 540 tgctgaacatgccacg 555 |||||||||||||||| Sbjct: 410 tgctgaacatgccacg 425 Score = 50.1 bits (25), Expect = 0.013 Identities = 46/53 (86%) Strand = Plus / Plus Query: 104 aggatgacccggagcatggccgccgggaagcggggcgccgacgctccggccaa 156 |||| ||| ||||||||||||| ||| |||| | ||||||| ||||||||||| Sbjct: 52 aggaagacacggagcatggccgtcggtaagcagcgcgccgaggctccggccaa 104 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 196 gcagaaggggaggaagaaggccaagaa 222 ||||||||||||||||| ||||||||| Sbjct: 147 gcagaaggggaggaagagggccaagaa 173 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 47 atgcctcccaagcgcaagtccccgg 71 |||||||| |||||||||||||||| Sbjct: 1 atgcctcctaagcgcaagtccccgg 25
>gb|AY104080.1| Zea mays PCO100337 mRNA sequence Length = 593 Score = 91.7 bits (46), Expect = 4e-15 Identities = 148/182 (81%) Strand = Plus / Plus Query: 364 gaagcgcgtcatcgtcgaggcttgcacccagtgccaacagttcaagagaagagctttaaa 423 |||||| |||||||||||||| ||||| |||||| |||||| |||| ||||| || Sbjct: 412 gaagcgtgtcatcgtcgaggcctgcactcagtgcagacagtttaagatccgagctcagaa 471 Query: 424 ggtgaaggaggatcttgaaagtgctgtccctggggtttctgtgacgatcaaccctgaaaa 483 |||||||||||| || |||||| ||| | ||||| ||||||| ||||||||| | || Sbjct: 472 ggtgaaggaggacctggaaagttatgtttcgggggtgtctgtgataatcaaccctcagaa 531 Query: 484 gccacgccgtggatgccttgagataagggaggaaggtggtgatgtgttcatttcactgct 543 |||||||||||| |||||||||||| | || || | || || |||||||| |||||||| Sbjct: 532 gccacgccgtggttgccttgagatacgtgaaaaaagcggcgaagtgttcatatcactgct 591 Query: 544 ga 545 || Sbjct: 592 ga 593 Score = 50.1 bits (25), Expect = 0.013 Identities = 25/25 (100%) Strand = Plus / Plus Query: 47 atgcctcccaagcgcaagtccccgg 71 ||||||||||||||||||||||||| Sbjct: 44 atgcctcccaagcgcaagtccccgg 68
>ref|NM_001061562.1| Oryza sativa (japonica cultivar-group) Os05g0250500 (Os05g0250500) mRNA, complete cds Length = 333 Score = 77.8 bits (39), Expect = 6e-11 Identities = 102/123 (82%) Strand = Plus / Plus Query: 484 gccacgccgtggatgccttgagataagggaggaaggtggtgatgtgttcatttcactgct 543 |||||| ||||| ||||| ||||| | |||||||||||||| |||||||| |||||||| Sbjct: 201 gccacgacgtggttgcctggagattcgtgaggaaggtggtgaagtgttcatatcactgct 260 Query: 544 gaacatgccacggcccttcaacaagatgagggagctggacatggacaaggttatcaagga 603 |||||||||| | || |||| ||||| | |||| |||||||| |||| |||||||| Sbjct: 261 gaacatgccaagacctttcacagcgatgaagaagctcgacatggatgaggtcatcaagga 320 Query: 604 cat 606 ||| Sbjct: 321 cat 323 Score = 54.0 bits (27), Expect = 8e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 400 acagttcaagagaagagctttaaaggtgaaggaggatcttgaaagtgctgtccctggggt 459 ||||||||||| |||||| | ||||| ||||||||||| |||||| ||| |||||||| Sbjct: 135 acagttcaagatcagagctgtgaaggtaaaggaggatctggaaagttttgttcctggggt 194 Query: 460 ttctgtg 466 |||||| Sbjct: 195 atctgtg 201
>gb|AC120989.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0032D15, complete sequence Length = 161968 Score = 63.9 bits (32), Expect = 9e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 400 acagttcaagagaagagctttaaaggtgaaggaggatcttgaaagtgctgtccctggggt 459 ||||||||||| |||||| | ||||| ||||||||||| |||||| ||| |||||||| Sbjct: 152873 acagttcaagatcagagctgtgaaggtaaaggaggatctggaaagttttgttcctggggt 152932 Query: 460 ttctgtgacgatcaaccctgaaaa 483 |||||| |||||||||||||| Sbjct: 152933 atctgtggtaatcaaccctgaaaa 152956 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 483 agccacgccgtggatgccttgagataagggaggaaggtggtgatgtgttcatttcactgc 542 ||||||| ||||| ||||| ||||| | |||||||||||||| |||||||| ||||||| Sbjct: 153078 agccacgacgtggttgcctggagattcgtgaggaaggtggtgaagtgttcatatcactgc 153137 Query: 543 tg 544 || Sbjct: 153138 tg 153139 Score = 44.1 bits (22), Expect = 0.80 Identities = 43/50 (86%) Strand = Plus / Plus Query: 104 aggatgacccggagcatggccgccgggaagcggggcgccgacgctccggc 153 |||| ||| ||||||||||||| |||||||| | | ||||| |||||||| Sbjct: 151805 aggaagacacggagcatggccgtcgggaagcagtgggccgaggctccggc 151854
>gb|AC104274.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1171_H02, complete sequence Length = 109969 Score = 63.9 bits (32), Expect = 9e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 400 acagttcaagagaagagctttaaaggtgaaggaggatcttgaaagtgctgtccctggggt 459 ||||||||||| |||||| | ||||| ||||||||||| |||||| ||| |||||||| Sbjct: 24500 acagttcaagatcagagctgtgaaggtaaaggaggatctggaaagttttgttcctggggt 24559 Query: 460 ttctgtgacgatcaaccctgaaaa 483 |||||| |||||||||||||| Sbjct: 24560 atctgtggtaatcaaccctgaaaa 24583 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 483 agccacgccgtggatgccttgagataagggaggaaggtggtgatgtgttcatttcactgc 542 ||||||| ||||| ||||| ||||| | |||||||||||||| |||||||| ||||||| Sbjct: 24705 agccacgacgtggttgcctggagattcgtgaggaaggtggtgaagtgttcatatcactgc 24764 Query: 543 tg 544 || Sbjct: 24765 tg 24766 Score = 44.1 bits (22), Expect = 0.80 Identities = 43/50 (86%) Strand = Plus / Plus Query: 104 aggatgacccggagcatggccgccgggaagcggggcgccgacgctccggc 153 |||| ||| ||||||||||||| |||||||| | | ||||| |||||||| Sbjct: 23432 aggaagacacggagcatggccgtcgggaagcagtgggccgaggctccggc 23481
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 63.9 bits (32), Expect = 9e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 400 acagttcaagagaagagctttaaaggtgaaggaggatcttgaaagtgctgtccctggggt 459 ||||||||||| |||||| | ||||| ||||||||||| |||||| ||| |||||||| Sbjct: 9042503 acagttcaagatcagagctgtgaaggtaaaggaggatctggaaagttttgttcctggggt 9042562 Query: 460 ttctgtgacgatcaaccctgaaaa 483 |||||| |||||||||||||| Sbjct: 9042563 atctgtggtaatcaaccctgaaaa 9042586 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 483 agccacgccgtggatgccttgagataagggaggaaggtggtgatgtgttcatttcactgc 542 ||||||| ||||| ||||| ||||| | |||||||||||||| |||||||| ||||||| Sbjct: 9042708 agccacgacgtggttgcctggagattcgtgaggaaggtggtgaagtgttcatatcactgc 9042767 Query: 543 tg 544 || Sbjct: 9042768 tg 9042769 Score = 44.1 bits (22), Expect = 0.80 Identities = 43/50 (86%) Strand = Plus / Plus Query: 104 aggatgacccggagcatggccgccgggaagcggggcgccgacgctccggc 153 |||| ||| ||||||||||||| |||||||| | | ||||| |||||||| Sbjct: 9041435 aggaagacacggagcatggccgtcgggaagcagtgggccgaggctccggc 9041484
>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence Length = 179668 Score = 58.0 bits (29), Expect = 5e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 400 acagttcaagagaagagctttaaaggtgaaggaggatcttgaaagtgctgtccctggggt 459 ||||||||||| |||||| ||||| ||||||||||| |||||| |||| |||||||| Sbjct: 138079 acagttcaagattagagctgcgaaggtaaaggaggatctggaaagttctgttcctggggt 138138 Query: 460 ttctgtgacgatcaaccctgaaaag 484 || ||| ||||||||||||||| Sbjct: 138139 atccgtggtaatcaaccctgaaaag 138163 Score = 50.1 bits (25), Expect = 0.013 Identities = 46/53 (86%) Strand = Plus / Plus Query: 104 aggatgacccggagcatggccgccgggaagcggggcgccgacgctccggccaa 156 |||| ||| ||||||||||||| ||| |||| | ||||||| ||||||||||| Sbjct: 136968 aggaagacacggagcatggccgtcggtaagcagcgcgccgaggctccggccaa 137020 Score = 48.1 bits (24), Expect = 0.051 Identities = 27/28 (96%) Strand = Plus / Plus Query: 44 gcgatgcctcccaagcgcaagtccccgg 71 ||||||||||| |||||||||||||||| Sbjct: 136914 gcgatgcctcctaagcgcaagtccccgg 136941 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 196 gcagaaggggaggaagaaggccaagaa 222 ||||||||||||||||| ||||||||| Sbjct: 137063 gcagaaggggaggaagagggccaagaa 137089 Score = 44.1 bits (22), Expect = 0.80 Identities = 52/62 (83%) Strand = Plus / Plus Query: 483 agccacgccgtggatgccttgagataagggaggaaggtggtgatgtgttcatttcactgc 542 ||||||| ||||| ||| | ||||| | |||||||||||||| |||||||| || |||| Sbjct: 138281 agccacgacgtggttgcttggagattcgtgaggaaggtggtgaagtgttcatatcgctgc 138340 Query: 543 tg 544 || Sbjct: 138341 tg 138342
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 58.0 bits (29), Expect = 5e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 400 acagttcaagagaagagctttaaaggtgaaggaggatcttgaaagtgctgtccctggggt 459 ||||||||||| |||||| ||||| ||||||||||| |||||| |||| |||||||| Sbjct: 28179516 acagttcaagattagagctgcgaaggtaaaggaggatctggaaagttctgttcctggggt 28179575 Query: 460 ttctgtgacgatcaaccctgaaaag 484 || ||| ||||||||||||||| Sbjct: 28179576 atccgtggtaatcaaccctgaaaag 28179600 Score = 50.1 bits (25), Expect = 0.013 Identities = 46/53 (86%) Strand = Plus / Plus Query: 104 aggatgacccggagcatggccgccgggaagcggggcgccgacgctccggccaa 156 |||| ||| ||||||||||||| ||| |||| | ||||||| ||||||||||| Sbjct: 28178405 aggaagacacggagcatggccgtcggtaagcagcgcgccgaggctccggccaa 28178457 Score = 48.1 bits (24), Expect = 0.051 Identities = 27/28 (96%) Strand = Plus / Plus Query: 44 gcgatgcctcccaagcgcaagtccccgg 71 ||||||||||| |||||||||||||||| Sbjct: 28178351 gcgatgcctcctaagcgcaagtccccgg 28178378 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 196 gcagaaggggaggaagaaggccaagaa 222 ||||||||||||||||| ||||||||| Sbjct: 28178500 gcagaaggggaggaagagggccaagaa 28178526 Score = 44.1 bits (22), Expect = 0.80 Identities = 52/62 (83%) Strand = Plus / Plus Query: 483 agccacgccgtggatgccttgagataagggaggaaggtggtgatgtgttcatttcactgc 542 ||||||| ||||| ||| | ||||| | |||||||||||||| |||||||| || |||| Sbjct: 28179718 agccacgacgtggttgcttggagattcgtgaggaaggtggtgaagtgttcatatcgctgc 28179777 Query: 543 tg 544 || Sbjct: 28179778 tg 28179779
>ref|NM_123613.3| Arabidopsis thaliana ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6); heat shock protein binding / unfolded protein binding (ARC6) mRNA, complete cds Length = 2627 Score = 48.1 bits (24), Expect = 0.051 Identities = 24/24 (100%) Strand = Plus / Minus Query: 233 gcggtggcgaaggaggaggaggag 256 |||||||||||||||||||||||| Sbjct: 304 gcggtggcgaaggaggaggaggag 281
>gb|AY221469.1| Arabidopsis thaliana division protein (ARC6) mRNA, complete cds; nuclear gene for chloroplast product Length = 2438 Score = 48.1 bits (24), Expect = 0.051 Identities = 24/24 (100%) Strand = Plus / Minus Query: 233 gcggtggcgaaggaggaggaggag 256 |||||||||||||||||||||||| Sbjct: 192 gcggtggcgaaggaggaggaggag 169
>gb|AY221468.1| Arabidopsis thaliana division protein (ARC6) gene, complete cds; nuclear gene for chloroplast product Length = 3668 Score = 48.1 bits (24), Expect = 0.051 Identities = 24/24 (100%) Strand = Plus / Minus Query: 233 gcggtggcgaaggaggaggaggag 256 |||||||||||||||||||||||| Sbjct: 668 gcggtggcgaaggaggaggaggag 645
>gb|AY221467.1| Arabidopsis thaliana truncated division protein (arc6) gene, arc6-1 allele, complete cds; nuclear gene for chloroplast product Length = 3664 Score = 48.1 bits (24), Expect = 0.051 Identities = 24/24 (100%) Strand = Plus / Minus Query: 233 gcggtggcgaaggaggaggaggag 256 |||||||||||||||||||||||| Sbjct: 668 gcggtggcgaaggaggaggaggag 645
>gb|AY150490.1| Arabidopsis thaliana unknown protein (At5g42480) mRNA, complete cds Length = 2436 Score = 48.1 bits (24), Expect = 0.051 Identities = 24/24 (100%) Strand = Plus / Minus Query: 233 gcggtggcgaaggaggaggaggag 256 |||||||||||||||||||||||| Sbjct: 191 gcggtggcgaaggaggaggaggag 168
>gb|AY091075.1| Arabidopsis thaliana unknown protein (At5g42480) mRNA, complete cds Length = 2637 Score = 48.1 bits (24), Expect = 0.051 Identities = 24/24 (100%) Strand = Plus / Minus Query: 233 gcggtggcgaaggaggaggaggag 256 |||||||||||||||||||||||| Sbjct: 304 gcggtggcgaaggaggaggaggag 281
>dbj|AB016888.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDH9 Length = 85791 Score = 48.1 bits (24), Expect = 0.051 Identities = 24/24 (100%) Strand = Plus / Minus Query: 233 gcggtggcgaaggaggaggaggag 256 |||||||||||||||||||||||| Sbjct: 64267 gcggtggcgaaggaggaggaggag 64244
>emb|BX841670.1|CNS09YJH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS89ZC08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 919 Score = 48.1 bits (24), Expect = 0.051 Identities = 24/24 (100%) Strand = Plus / Minus Query: 233 gcggtggcgaaggaggaggaggag 256 |||||||||||||||||||||||| Sbjct: 203 gcggtggcgaaggaggaggaggag 180
>ref|XM_963410.1| PREDICTED: Tribolium castaneum similar to Innexin inx1 (Innexin-1) (Protein ogre) (Optic ganglion reduced protein) (LOC656913), mRNA Length = 1080 Score = 46.1 bits (23), Expect = 0.20 Identities = 23/23 (100%) Strand = Plus / Plus Query: 297 agaaaaatgccaagaaggaggtg 319 ||||||||||||||||||||||| Sbjct: 461 agaaaaatgccaagaaggaggtg 483
>emb|CR664124.2|CNS0FBEQ Tetraodon nigroviridis full-length cDNA Length = 1427 Score = 46.1 bits (23), Expect = 0.20 Identities = 23/23 (100%) Strand = Plus / Plus Query: 307 caagaaggaggtggtggcggccg 329 ||||||||||||||||||||||| Sbjct: 189 caagaaggaggtggtggcggccg 211
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 46.1 bits (23), Expect = 0.20 Identities = 32/35 (91%) Strand = Plus / Minus Query: 222 aggaggtgtctgcggtggcgaaggaggaggaggag 256 |||||||||| ||||||| || ||||||||||||| Sbjct: 11889274 aggaggtgtcggcggtggagacggaggaggaggag 11889240 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 234 cggtggcgaaggaggaggaggagac 258 |||||||| |||||||||||||||| Sbjct: 12065172 cggtggcggaggaggaggaggagac 12065148
>gb|AC116482.11| Mus musculus chromosome 8, clone RP23-423D8, complete sequence Length = 202027 Score = 46.1 bits (23), Expect = 0.20 Identities = 32/35 (91%) Strand = Plus / Plus Query: 222 aggaggtgtctgcggtggcgaaggaggaggaggag 256 |||||||| | ||||||||| |||||||||||||| Sbjct: 39963 aggaggtggcggcggtggcggaggaggaggaggag 39997
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 46.1 bits (23), Expect = 0.20 Identities = 32/35 (91%) Strand = Plus / Minus Query: 222 aggaggtgtctgcggtggcgaaggaggaggaggag 256 |||||||||| ||||||| || ||||||||||||| Sbjct: 70764 aggaggtgtcggcggtggagacggaggaggaggag 70730
>emb|CT828152.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA028F12, full insert sequence Length = 704 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 198 agaaggggaggaagaaggccaagaag 223 ||||||||||||||||||| |||||| Sbjct: 257 agaaggggaggaagaaggcgaagaag 282
>emb|CT837605.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA018O23, full insert sequence Length = 658 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 198 agaaggggaggaagaaggccaagaag 223 ||||||||| |||||||||||||||| Sbjct: 208 agaaggggaagaagaaggccaagaag 233
>ref|NM_001051289.1| Oryza sativa (japonica cultivar-group) Os01g0839500 (Os01g0839500) mRNA, complete cds Length = 420 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 198 agaaggggaggaagaaggccaagaag 223 ||||||||| |||||||||||||||| Sbjct: 116 agaaggggaagaagaaggccaagaag 141
>ref|NM_001049673.1| Oryza sativa (japonica cultivar-group) Os01g0502900 (Os01g0502900) mRNA, complete cds Length = 309 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 198 agaaggggaggaagaaggccaagaag 223 ||||||||||||||||||| |||||| Sbjct: 104 agaaggggaggaagaaggcgaagaag 129
>gb|AC189527.1| Brassica rapa subsp. pekinensis clone KBrB092L06, complete sequence Length = 126922 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 241 gaaggaggaggaggagacggtg 262 |||||||||||||||||||||| Sbjct: 41073 gaaggaggaggaggagacggtg 41094
>gb|DQ446753.1| Arabidopsis thaliana clone pENTR221-At3g50580 proline-rich family protein (At3g50580) mRNA, complete cds Length = 889 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Minus Query: 244 ggaggaggaggagacggtgttg 265 |||||||||||||||||||||| Sbjct: 278 ggaggaggaggagacggtgttg 257
>ref|NM_114918.1| Arabidopsis thaliana unknown protein (AT3G50580) mRNA, complete cds Length = 798 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Minus Query: 244 ggaggaggaggagacggtgttg 265 |||||||||||||||||||||| Sbjct: 278 ggaggaggaggagacggtgttg 257
>gb|BT017477.1| Zea mays clone EL01N0408F05.c mRNA sequence Length = 574 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 198 agaaggggaggaagaaggccaagaag 223 |||||||| ||||||||||||||||| Sbjct: 222 agaaggggcggaagaaggccaagaag 247
>gb|BT016519.1| Zea mays clone Contig352 mRNA sequence Length = 789 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 198 agaaggggaggaagaaggccaagaag 223 ||||||||| |||||||||||||||| Sbjct: 227 agaaggggaagaagaaggccaagaag 252
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 198 agaaggggaggaagaaggccaagaag 223 ||||||||||||||||||| |||||| Sbjct: 9463150 agaaggggaggaagaaggcgaagaag 9463175 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 704 ttgcagacttgcagtagccgtataa 728 |||||||||||||||||| |||||| Sbjct: 23515679 ttgcagacttgcagtagcagtataa 23515703
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Minus Query: 198 agaaggggaggaagaaggccaagaag 223 ||||||||||||||||||| |||||| Sbjct: 17422020 agaaggggaggaagaaggcgaagaag 17421995 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Minus Query: 198 agaaggggaggaagaaggccaagaag 223 ||||||||| |||||||||||||||| Sbjct: 36007736 agaaggggaagaagaaggccaagaag 36007711
>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence Length = 187589 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 198 agaaggggaggaagaaggccaagaag 223 ||||||||||||||||||| |||||| Sbjct: 162429 agaaggggaggaagaaggcgaagaag 162454
>emb|AL731541.6| Human DNA sequence from clone RP11-472K8 on chromosome 10 Contains the 3' end of the CDH23 gene for cadherin related 23, a novel gene (FLJ00041 PP2135), the 3' end of the PSAP gene for prosaposin (variant Gaucher disease and variant metachromatic leukodystrophy) (GLBA, SAP1), a novel gene (FLJ00245) and a CpG island, complete sequence Length = 178254 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 211 gaaggccaagaaggaggtgtct 232 |||||||||||||||||||||| Sbjct: 143619 gaaggccaagaaggaggtgtct 143640
>gb|AC021541.7| Homo sapiens chromosome 15, clone RP11-505L16, complete sequence Length = 194023 Score = 44.1 bits (22), Expect = 0.80 Identities = 28/30 (93%) Strand = Plus / Minus Query: 226 ggtgtctgcggtggcgaaggaggaggagga 255 |||||||||||||| |||| |||||||||| Sbjct: 82307 ggtgtctgcggtggggaagcaggaggagga 82278
>emb|X69961.1|SMH2B4A Z.mays gene for H2B histone (gH2B4) Length = 2361 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 198 agaaggggaggaagaaggccaagaag 223 ||||||||| |||||||||||||||| Sbjct: 1074 agaaggggaagaagaaggccaagaag 1099
>emb|AL133363.1|ATT20E23 Arabidopsis thaliana DNA chromosome 3, BAC clone T20E23 Length = 83513 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 244 ggaggaggaggagacggtgttg 265 |||||||||||||||||||||| Sbjct: 59199 ggaggaggaggagacggtgttg 59220
>dbj|AP003241.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0408C03 Length = 141273 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Minus Query: 198 agaaggggaggaagaaggccaagaag 223 ||||||||| |||||||||||||||| Sbjct: 20461 agaaggggaagaagaaggccaagaag 20436
>dbj|AP003231.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031D11 Length = 138108 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Minus Query: 198 agaaggggaggaagaaggccaagaag 223 ||||||||| |||||||||||||||| Sbjct: 106414 agaaggggaagaagaaggccaagaag 106389
>dbj|AP003144.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0507H06 Length = 136351 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Minus Query: 198 agaaggggaggaagaaggccaagaag 223 ||||||||||||||||||| |||||| Sbjct: 75412 agaaggggaggaagaaggcgaagaag 75387
>emb|CR377924.1| Pinus pinaster SSR, clone PPB4C07 Length = 620 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Minus Query: 235 ggtggcgaaggaggaggaggag 256 |||||||||||||||||||||| Sbjct: 606 ggtggcgaaggaggaggaggag 585
>ref|XM_417141.2| PREDICTED: Gallus gallus zinc finger, DHHC-type containing 20 (ZDHHC20), mRNA Length = 4226 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 308 aagaaggaggtggtggcggccgcgg 332 ||||||||||||||||||| ||||| Sbjct: 251 aagaaggaggtggtggcgggcgcgg 275
>gb|CP000454.1| Arthrobacter sp. FB24, complete genome Length = 4698945 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 329 gcggtagatgatggcggtgctggcgttga 357 |||||||||| || ||||||||||||||| Sbjct: 640199 gcggtagatggtgccggtgctggcgttga 640227
>gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome Length = 9965640 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 329 gcggtagatgatggcggtgctggcgttga 357 |||||||||| | |||||||||||||||| Sbjct: 1199609 gcggtagatggtcgcggtgctggcgttga 1199637
>ref|XM_787863.2| PREDICTED: Strongylocentrotus purpuratus similar to epoxide hydrolase (LOC588166), partial mRNA Length = 1418 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 676 agggcttattttgtgtgggaa 696 ||||||||||||||||||||| Sbjct: 1074 agggcttattttgtgtgggaa 1094
>ref|XM_001191478.1| PREDICTED: Strongylocentrotus purpuratus similar to epoxide hydrolase (LOC588166), partial mRNA Length = 1418 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 676 agggcttattttgtgtgggaa 696 ||||||||||||||||||||| Sbjct: 1074 agggcttattttgtgtgggaa 1094
>ref|XM_590898.2| PREDICTED: Bos taurus similar to glucocorticoid induced gene 1 (LOC513243), mRNA Length = 1639 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 574 ggagctggacatggacaaggt 594 ||||||||||||||||||||| Sbjct: 405 ggagctggacatggacaaggt 425
>gb|AY547309.1| Rattus norvegicus sodium dependent glycine type 2b transporter (Glyt2) mRNA, complete cds, alternatively spliced Length = 6967 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 240 cgaaggaggaggaggagacgg 260 ||||||||||||||||||||| Sbjct: 3309 cgaaggaggaggaggagacgg 3289
>ref|NM_203334.1| Rattus norvegicus solute carrier family 6 (neurotransmitter transporter, glycine), member 5 (Slc6a5), mRNA gb|L21672.2|RATGLY Rattus norvegicus GLYT2a (Slc6a5) mRNA, complete cds, alternatively spliced Length = 7075 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 240 cgaaggaggaggaggagacgg 260 ||||||||||||||||||||| Sbjct: 3417 cgaaggaggaggaggagacgg 3397
>gb|AC092780.6| Oryza sativa chromosome 3 BAC OSJNBb0079B16 genomic sequence, complete sequence Length = 144383 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 704 ttgcagacttgcagtagccgtataa 728 |||||||||||||||||| |||||| Sbjct: 59606 ttgcagacttgcagtagcagtataa 59582
>ref|XM_382970.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG02794.1) partial mRNA Length = 1068 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 230 tctgcggtggcgaaggaggaggagg 254 |||||||||||| |||||||||||| Sbjct: 661 tctgcggtggcggaggaggaggagg 637
>ref|XM_741394.1| Aspergillus fumigatus Af293 hypothetical protein (Afu4g03010) partial mRNA Length = 303 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 289 gaaggtgaagaaaaatgccaagaag 313 ||||||||||||||| ||||||||| Sbjct: 192 gaaggtgaagaaaaaagccaagaag 168
>gb|AC164656.5| Pan troglodytes BAC clone CH251-483E17 from chromosome unknown, complete sequence Length = 230238 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 503 gagataagggaggaaggtggt 523 ||||||||||||||||||||| Sbjct: 206726 gagataagggaggaaggtggt 206706
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 ggcgaaggaggaggaggagacggtg 262 ||||||||||| ||||||||||||| Sbjct: 8542401 ggcgaaggaggcggaggagacggtg 8542425
>gb|AC158243.2| Pan troglodytes BAC clone CH251-334P1 from chromosome unknown, complete sequence Length = 167489 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 503 gagataagggaggaaggtggt 523 ||||||||||||||||||||| Sbjct: 93941 gagataagggaggaaggtggt 93921
>emb|BX842632.1| Neurospora crassa DNA linkage group I BAC contig B5K2 Length = 86737 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 194 gggcagaaggggaggaagaag 214 ||||||||||||||||||||| Sbjct: 60580 gggcagaaggggaggaagaag 60600
>gb|AF361331.1|AF361331 Folsomia candida fushi tarazu gene, partial cds Length = 359 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 204 ggaggaagaaggccaagaaggaggt 228 |||||| |||||||||||||||||| Sbjct: 148 ggaggatgaaggccaagaaggaggt 172
>dbj|AP004740.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0092H22 Length = 165194 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 ggcgaaggaggaggaggagacggtg 262 ||||||||||| ||||||||||||| Sbjct: 157102 ggcgaaggaggcggaggagacggtg 157126
>dbj|AP004630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0031A09 Length = 162511 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 ggcgaaggaggaggaggagacggtg 262 ||||||||||| ||||||||||||| Sbjct: 17220 ggcgaaggaggcggaggagacggtg 17244
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 234 cggtggcgaaggaggaggaggagac 258 |||||||| |||||||||||||||| Sbjct: 169652 cggtggcggaggaggaggaggagac 169628
>dbj|BS000241.1| Pan troglodytes chromosome 22 clone:PTB-110J21, map 22, complete sequences Length = 102671 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 tgctgtccctggggtttctgt 465 ||||||||||||||||||||| Sbjct: 30801 tgctgtccctggggtttctgt 30821
>ref|XM_960607.1| Neurospora crassa OR74A hypothetical protein (NCU02569.1) partial mRNA Length = 3924 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 194 gggcagaaggggaggaagaag 214 ||||||||||||||||||||| Sbjct: 2750 gggcagaaggggaggaagaag 2770
>ref|XM_959545.1| Neurospora crassa OR74A hypothetical protein (NCU07451.1) partial mRNA Length = 1992 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 198 agaaggggaggaagaaggccaagaaggag 226 |||||| || ||||||||||||||||||| Sbjct: 1889 agaaggagaagaagaaggccaagaaggag 1917
>gb|AC163704.4| Gallus gallus BAC clone CH261-114A20 from chromosome ul, complete sequence Length = 198816 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 233 gcggtggcgaaggaggaggaggaga 257 ||||||| ||||||||||||||||| Sbjct: 61792 gcggtggagaaggaggaggaggaga 61768
>emb|BX537140.3| Zebrafish DNA sequence from clone CH211-14N18 in linkage group 20, complete sequence Length = 179077 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 761 tgggctaagacatgctgaaat 781 ||||||||||||||||||||| Sbjct: 32499 tgggctaagacatgctgaaat 32479
>ref|XM_312591.2| Anopheles gambiae str. PEST ENSANGP00000014306 (ENSANGG00000011817), partial mRNA Length = 1995 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 208 gaagaaggccaagaaggaggtgtctgcgg 236 ||||||||||||| ||||||||| ||||| Sbjct: 771 gaagaaggccaaggaggaggtgtatgcgg 799
>dbj|AP001759.1| Homo sapiens genomic DNA, chromosome 21q, section 103/105 Length = 340000 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 tgctgtccctggggtttctgt 465 ||||||||||||||||||||| Sbjct: 154206 tgctgtccctggggtttctgt 154226
>emb|AL365295.4|CNS05TF5 Human chromosome 14 DNA sequence BAC R-784H12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 192899 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 503 gagataagggaggaaggtggt 523 ||||||||||||||||||||| Sbjct: 63583 gagataagggaggaaggtggt 63563
>gb|AC007073.2|AC007073 Homo sapiens chromosome 4 clone C0310G15 map 4p16, complete sequence Length = 193772 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 610 ccagaaaatcgcttgaatctg 630 ||||||||||||||||||||| Sbjct: 145774 ccagaaaatcgcttgaatctg 145754
>dbj|AP001101.2| Homo sapiens genomic DNA, chromosome 21q22.3, Telomere region, clone:P8G4 Length = 32331 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 tgctgtccctggggtttctgt 465 ||||||||||||||||||||| Sbjct: 30482 tgctgtccctggggtttctgt 30502 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 144,766,277 Number of extensions: 9149619 Number of successful extensions: 557758 Number of sequences better than 10.0: 71 Number of HSP's gapped: 557756 Number of HSP's successfully gapped: 96 Length of query: 843 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 821 Effective length of database: 18,508,616,841 Effective search space: 15195574426461 Effective search space used: 15195574426461 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)