| Clone Name | FLbaf80g03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC161187.5| Mus musculus chromosome 5, clone RP23-297H22, complete sequence Length = 171367 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Minus Query: 614 ggttggagttagagaaaagaagg 636 ||||||||||||||||||||||| Sbjct: 132412 ggttggagttagagaaaagaagg 132390
>gb|AC110251.11| Mus musculus chromosome 5, clone RP23-263O8, complete sequence Length = 197946 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Minus Query: 614 ggttggagttagagaaaagaagg 636 ||||||||||||||||||||||| Sbjct: 74693 ggttggagttagagaaaagaagg 74671
>dbj|AK232936.1| Sus scrofa mRNA, clone:LVRM10052F08, expressed in liver Length = 2526 Score = 44.1 bits (22), Expect = 0.69 Identities = 28/30 (93%) Strand = Plus / Minus Query: 123 gatcaaccagcttctgcccaaaagagaaga 152 |||||| |||||||| |||||||||||||| Sbjct: 1530 gatcaatcagcttcttcccaaaagagaaga 1501
>gb|AC159821.2| Mus musculus BAC clone RP23-152A3 from chromosome 9, complete sequence Length = 221672 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Minus Query: 626 agaaaagaaggccaaggaaaga 647 |||||||||||||||||||||| Sbjct: 212181 agaaaagaaggccaaggaaaga 212160
>gb|AC104111.2| Homo sapiens chromosome 5 clone RP11-176O14, complete sequence Length = 171234 Score = 44.1 bits (22), Expect = 0.69 Identities = 25/26 (96%) Strand = Plus / Minus Query: 459 tccaaagaagctttggctaaagtcac 484 |||||||||||||| ||||||||||| Sbjct: 108117 tccaaagaagcttttgctaaagtcac 108092
>gb|AC142168.3| Mus musculus BAC clone RP24-80B23 from chromosome 9, complete sequence Length = 173152 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Minus Query: 626 agaaaagaaggccaaggaaaga 647 |||||||||||||||||||||| Sbjct: 128504 agaaaagaaggccaaggaaaga 128483
>ref|XM_001198584.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC762815 (LOC762815), partial mRNA Length = 1115 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 627 gaaaagaaggccaaggaaaga 647 ||||||||||||||||||||| Sbjct: 929 gaaaagaaggccaaggaaaga 949
>ref|XM_001203310.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC766982 (LOC766982), partial mRNA Length = 1115 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 627 gaaaagaaggccaaggaaaga 647 ||||||||||||||||||||| Sbjct: 929 gaaaagaaggccaaggaaaga 949
>gb|AY857619.1| Pectinaria gouldii ribosomal protein L13 mRNA, complete cds Length = 703 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 78 gctcactttcgcaaagactggcaaa 102 |||||||||| |||||||||||||| Sbjct: 72 gctcactttcacaaagactggcaaa 96
>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence Length = 1440588 Score = 42.1 bits (21), Expect = 2.7 Identities = 45/53 (84%) Strand = Plus / Minus Query: 378 aacgtccaaagattaaagcaatacaagaccaagttggttctcttcccaagaaa 430 |||||||||||||| ||| ||||| | | |||||| || ||||||||||||| Sbjct: 775031 aacgtccaaagattgaaggaataccaatctaagttgattgtcttcccaagaaa 774979
>ref|XM_449076.1| Candida glabrata CBS138, CAGL0L06886g partial mRNA Length = 629 Score = 42.1 bits (21), Expect = 2.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 378 aacgtccaaagattaaagcaatacaagaccaagttggttctcttcccaagaaa 430 |||||||||||||| ||| ||||| | | |||||| || ||||||||||||| Sbjct: 363 aacgtccaaagattgaaggaataccaatctaagttgattgtcttcccaagaaa 415
>gb|AC172744.2| Medicago truncatula chromosome 2 BAC clone mth2-33p17, complete sequence Length = 116124 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 689 tttgccaaataaatctcttcc 709 ||||||||||||||||||||| Sbjct: 98912 tttgccaaataaatctcttcc 98932 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 140,881,770 Number of extensions: 8220625 Number of successful extensions: 190174 Number of sequences better than 10.0: 12 Number of HSP's gapped: 190174 Number of HSP's successfully gapped: 12 Length of query: 729 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 707 Effective length of database: 18,508,616,841 Effective search space: 13085592106587 Effective search space used: 13085592106587 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)