ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf77m18 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT834670.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN074J17, full insert sequence Length = 638 Score = 289 bits (146), Expect = 6e-75 Identities = 287/334 (85%) Strand = Plus / Plus Query: 38 ccttcaagaaggagttcaccctggaggagagggcgaatgagtcggccgccatgatcgcca 97 |||||||| ||||||||||||||||||||||||| || ||||||||| ||||||||||| Sbjct: 138 ccttcaaggaggagttcaccctggaggagagggccaaggagtcggcctccatgatcgcct 197 Query: 98 agtaccccggcaggatccccgtgattgttgaaaggttttcgaggagtaaccttccagaga 157 ||||||| |||||||||||| |||||||| |||||||| || |||| |||||||| | Sbjct: 198 cctaccccgccaggatccccgtcattgttgagaggttttcaagaagtagtcttccagaaa 257 Query: 158 tggaaaagaggaagtacctggttccatgcgacatgccagttgggcagttcattttcatcc 217 |||| ||| | | |||||| |||||||| |||||||||||||||||||| |||||||| | Sbjct: 258 tggagaagcgcatgtacctagttccatgtgacatgccagttgggcagtttattttcatac 317 Query: 218 tgcgctccaggttacatctgtctccaggaacggcgcttttcgtgtttgtgagcaacacct 277 | || || |||||||||||||||||||||| || || || |||||||| | |||||| | Sbjct: 318 ttcgttcaaggttacatctgtctccaggaatagcactgtttgtgtttgtcaacaacacgt 377 Query: 278 tgccccaaacaggtaacctgatgggcagcgtgtatgattcgtacaaggacaaggaggatg 337 ||||||| || | | | ||||||||||| ||||| || || ||||| || |||| |||| Sbjct: 378 tgccccagactgctcagctgatgggcagtgtgtacgagtcatacaaagatgaggacgatg 437 Query: 338 gcttcctctacatgtgctacagcagcgagaagac 371 |||||||||||||||||||||||||||||||||| Sbjct: 438 gcttcctctacatgtgctacagcagcgagaagac 471
>dbj|AK065550.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025M24, full insert sequence Length = 1941 Score = 204 bits (103), Expect = 3e-49 Identities = 214/251 (85%) Strand = Plus / Plus Query: 121 attgttgaaaggttttcgaggagtaaccttccagagatggaaaagaggaagtacctggtt 180 |||||||| |||||||| || |||| |||||||| ||||| ||| | |||||||| ||| Sbjct: 1524 attgttgagaggttttcaagaagtagtcttccagaaatggagaagcgcaagtacctagtt 1583 Query: 181 ccatgcgacatgccagttgggcagttcattttcatcctgcgctccaggttacatctgtct 240 ||||| |||||||||||||||||||| |||||||| || || || ||||||||||||||| Sbjct: 1584 ccatgtgacatgccagttgggcagtttattttcatacttcgttcaaggttacatctgtct 1643 Query: 241 ccaggaacggcgcttttcgtgtttgtgagcaacaccttgccccaaacaggtaacctgatg 300 ||||||| || || || |||||||| | |||||| |||||||| || | | | |||||| Sbjct: 1644 ccaggaatagcactgtttgtgtttgtcaacaacacgttgccccagactgctcagctgatg 1703 Query: 301 ggcagcgtgtatgattcgtacaaggacaaggaggatggcttcctctacatgtgctacagc 360 ||||| ||||| || || ||||| || |||| ||||||||||||||||||||||||||| Sbjct: 1704 ggcagtgtgtacgagtcatacaaagatgaggacgatggcttcctctacatgtgctacagc 1763 Query: 361 agcgagaagac 371 ||||||||||| Sbjct: 1764 agcgagaagac 1774 Score = 99.6 bits (50), Expect = 1e-17 Identities = 74/82 (90%) Strand = Plus / Plus Query: 38 ccttcaagaaggagttcaccctggaggagagggcgaatgagtcggccgccatgatcgcca 97 |||||||| ||||||||||||||||||||||||| || ||||||||| ||||||||||| Sbjct: 34 ccttcaaggaggagttcaccctggaggagagggccaaggagtcggcctccatgatcgcct 93 Query: 98 agtaccccggcaggatccccgt 119 ||||||| |||||||||||| Sbjct: 94 cctaccccgccaggatccccgt 115
>dbj|AK240971.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065047F14, full insert sequence Length = 2583 Score = 196 bits (99), Expect = 7e-47 Identities = 204/239 (85%) Strand = Plus / Plus Query: 133 ttttcgaggagtaaccttccagagatggaaaagaggaagtacctggttccatgcgacatg 192 |||||||||||||| |||||||| ||||| ||| | ||||||||||||||||| ||||| Sbjct: 2179 ttttcgaggagtaatcttccagaaatggagaagcgcaagtacctggttccatgtaacatg 2238 Query: 193 ccagttgggcagttcattttcatcctgcgctccaggttacatctgtctccaggaacggcg 252 |||||||||||||| |||||||| || || |||||| ||||| |||||||||| || ||| Sbjct: 2239 ccagttgggcagtttattttcatacttcgttccaggctacatttgtctccagggacagcg 2298 Query: 253 cttttcgtgtttgtgagcaacaccttgccccaaacaggtaacctgatgggcagcgtgtat 312 | || |||||||| | |||||| |||||||| || | | | ||||||||||| |||||| Sbjct: 2299 ttgtttgtgtttgtcaacaacactttgccccagactgctcagctgatgggcagtgtgtat 2358 Query: 313 gattcgtacaaggacaaggaggatggcttcctctacatgtgctacagcagcgagaagac 371 || || ||||| || ||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 2359 gagtcatacaaagatgagggcgatggcttcctctacttgtgctacagcagcgagaagac 2417 Score = 93.7 bits (47), Expect = 7e-16 Identities = 71/79 (89%) Strand = Plus / Plus Query: 38 ccttcaagaaggagttcaccctggaggagagggcgaatgagtcggccgccatgatcgcca 97 |||||||| ||||||||||| ||||||||||||| || ||||||||||||||||||||| Sbjct: 168 ccttcaaggaggagttcaccttggaggagagggccaaggagtcggccgccatgatcgcct 227 Query: 98 agtaccccggcaggatccc 116 ||||||| ||||||||| Sbjct: 228 cctaccccgacaggatccc 246
>ref|NM_001071754.1| Oryza sativa (japonica cultivar-group) Os11g0100100 (Os11g0100100) mRNA, complete cds Length = 822 Score = 99.6 bits (50), Expect = 1e-17 Identities = 119/142 (83%) Strand = Plus / Plus Query: 230 tacatctgtctccaggaacggcgcttttcgtgtttgtgagcaacaccttgccccaaacag 289 ||||| |||||||||| || ||| | || |||||||| | |||||| |||||||| || | Sbjct: 671 tacatttgtctccagggacagcgttgtttgtgtttgtcaacaacactttgccccagactg 730 Query: 290 gtaacctgatgggcagcgtgtatgattcgtacaaggacaaggaggatggcttcctctaca 349 | | ||||||||||| |||||||| || ||||| || ||| ||||||||||||||| Sbjct: 731 ctcagctgatgggcagtgtgtatgagtcatacaaagatgagggcgatggcttcctctact 790 Query: 350 tgtgctacagcagcgagaagac 371 |||||||||||||||||||||| Sbjct: 791 tgtgctacagcagcgagaagac 812 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 133 ttttcgaggagtaaccttccagagatgga 161 |||||||||||||| |||||||| ||||| Sbjct: 631 ttttcgaggagtaatcttccagaaatgga 659
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 99.6 bits (50), Expect = 1e-17 Identities = 98/114 (85%) Strand = Plus / Minus Query: 171 gtacctggttccatgcgacatgccagttgggcagttcattttcatcctgcgctccaggtt 230 ||||||||||||||| ||||||||||||||||||| |||||||| || || |||||| | Sbjct: 633 gtacctggttccatgtaacatgccagttgggcagtttattttcatacttcgttccaggct 574 Query: 231 acatctgtctccaggaacggcgcttttcgtgtttgtgagcaacaccttgcccca 284 |||| |||||||||| || ||| | || |||||||| | |||||| |||||||| Sbjct: 573 acatttgtctccagggacagcgttgtttgtgtttgtcaacaacactttgcccca 520 Score = 81.8 bits (41), Expect = 3e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 295 ctgatgggcagcgtgtatgattcgtacaaggacaaggaggatggcttcctctacatgtgc 354 ||||||||||| |||||||| || ||||| || ||| ||||||||||||||| ||||| Sbjct: 422 ctgatgggcagtgtgtatgagtcatacaaagatgagggcgatggcttcctctacttgtgc 363 Query: 355 tacagcagcgagaagac 371 ||||||||||||||||| Sbjct: 362 tacagcagcgagaagac 346 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 61 gaggagagggcgaatgagtcggccgccatgatcgccaagtaccccggcaggatccc 116 ||||||||||| || ||||||||||||||||||||| ||||||| ||||||||| Sbjct: 2946 gaggagagggccaaggagtcggccgccatgatcgcctcctaccccgacaggatccc 2891 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 133 ttttcgaggagtaaccttccagagatgga 161 |||||||||||||| |||||||| ||||| Sbjct: 741 ttttcgaggagtaatcttccagaaatgga 713
>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147503 Score = 99.6 bits (50), Expect = 1e-17 Identities = 98/114 (85%) Strand = Plus / Minus Query: 171 gtacctggttccatgcgacatgccagttgggcagttcattttcatcctgcgctccaggtt 230 ||||||||||||||| ||||||||||||||||||| |||||||| || || |||||| | Sbjct: 633 gtacctggttccatgtaacatgccagttgggcagtttattttcatacttcgttccaggct 574 Query: 231 acatctgtctccaggaacggcgcttttcgtgtttgtgagcaacaccttgcccca 284 |||| |||||||||| || ||| | || |||||||| | |||||| |||||||| Sbjct: 573 acatttgtctccagggacagcgttgtttgtgtttgtcaacaacactttgcccca 520 Score = 81.8 bits (41), Expect = 3e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 295 ctgatgggcagcgtgtatgattcgtacaaggacaaggaggatggcttcctctacatgtgc 354 ||||||||||| |||||||| || ||||| || ||| ||||||||||||||| ||||| Sbjct: 422 ctgatgggcagtgtgtatgagtcatacaaagatgagggcgatggcttcctctacttgtgc 363 Query: 355 tacagcagcgagaagac 371 ||||||||||||||||| Sbjct: 362 tacagcagcgagaagac 346 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 61 gaggagagggcgaatgagtcggccgccatgatcgccaagtaccccggcaggatccc 116 ||||||||||| || ||||||||||||||||||||| ||||||| ||||||||| Sbjct: 2946 gaggagagggccaaggagtcggccgccatgatcgcctcctaccccgacaggatccc 2891 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 133 ttttcgaggagtaaccttccagagatgga 161 |||||||||||||| |||||||| ||||| Sbjct: 741 ttttcgaggagtaatcttccagaaatgga 713
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 83.8 bits (42), Expect = 7e-13 Identities = 96/114 (84%) Strand = Plus / Minus Query: 171 gtacctggttccatgcgacatgccagttgggcagttcattttcatcctgcgctccaggtt 230 ||||||||||||||| |||||||||||||||| || |||||||| || | |||||| | Sbjct: 19442942 gtacctggttccatgtaacatgccagttgggcactttattttcatacttcattccaggct 19442883 Query: 231 acatctgtctccaggaacggcgcttttcgtgtttgtgagcaacaccttgcccca 284 |||| || |||||||||| ||| | || |||||||| | |||||| |||||||| Sbjct: 19442882 acatttgcctccaggaacagcgttgtttgtgtttgtcaacaacactttgcccca 19442829 Score = 81.8 bits (41), Expect = 3e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 295 ctgatgggcagcgtgtatgattcgtacaaggacaaggaggatggcttcctctacatgtgc 354 ||||||||||| |||||||| || ||||| || ||| ||||||||||||||| ||||| Sbjct: 19442729 ctgatgggcagtgtgtatgagtcatacaaagatgagggcgatggcttcctctacttgtgc 19442670 Query: 355 tacagcagcgagaagac 371 ||||||||||||||||| Sbjct: 19442669 tacagcagcgagaagac 19442653 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 133 ttttcgaggagtaaccttccagagatgga 161 |||||||||||||| |||||||| ||||| Sbjct: 19443050 ttttcgaggagtaatcttccagaaatgga 19443022
>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0476H10 Length = 151703 Score = 83.8 bits (42), Expect = 7e-13 Identities = 96/114 (84%) Strand = Plus / Minus Query: 171 gtacctggttccatgcgacatgccagttgggcagttcattttcatcctgcgctccaggtt 230 ||||||||||||||| |||||||||||||||| || |||||||| || | |||||| | Sbjct: 60469 gtacctggttccatgtaacatgccagttgggcactttattttcatacttcattccaggct 60410 Query: 231 acatctgtctccaggaacggcgcttttcgtgtttgtgagcaacaccttgcccca 284 |||| || |||||||||| ||| | || |||||||| | |||||| |||||||| Sbjct: 60409 acatttgcctccaggaacagcgttgtttgtgtttgtcaacaacactttgcccca 60356 Score = 81.8 bits (41), Expect = 3e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 295 ctgatgggcagcgtgtatgattcgtacaaggacaaggaggatggcttcctctacatgtgc 354 ||||||||||| |||||||| || ||||| || ||| ||||||||||||||| ||||| Sbjct: 60256 ctgatgggcagtgtgtatgagtcatacaaagatgagggcgatggcttcctctacttgtgc 60197 Query: 355 tacagcagcgagaagac 371 ||||||||||||||||| Sbjct: 60196 tacagcagcgagaagac 60180 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 133 ttttcgaggagtaaccttccagagatgga 161 |||||||||||||| |||||||| ||||| Sbjct: 60577 ttttcgaggagtaatcttccagaaatgga 60549
>dbj|AP004879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0475F05 Length = 147522 Score = 83.8 bits (42), Expect = 7e-13 Identities = 96/114 (84%) Strand = Plus / Minus Query: 171 gtacctggttccatgcgacatgccagttgggcagttcattttcatcctgcgctccaggtt 230 ||||||||||||||| |||||||||||||||| || |||||||| || | |||||| | Sbjct: 128433 gtacctggttccatgtaacatgccagttgggcactttattttcatacttcattccaggct 128374 Query: 231 acatctgtctccaggaacggcgcttttcgtgtttgtgagcaacaccttgcccca 284 |||| || |||||||||| ||| | || |||||||| | |||||| |||||||| Sbjct: 128373 acatttgcctccaggaacagcgttgtttgtgtttgtcaacaacactttgcccca 128320 Score = 81.8 bits (41), Expect = 3e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 295 ctgatgggcagcgtgtatgattcgtacaaggacaaggaggatggcttcctctacatgtgc 354 ||||||||||| |||||||| || ||||| || ||| ||||||||||||||| ||||| Sbjct: 128220 ctgatgggcagtgtgtatgagtcatacaaagatgagggcgatggcttcctctacttgtgc 128161 Query: 355 tacagcagcgagaagac 371 ||||||||||||||||| Sbjct: 128160 tacagcagcgagaagac 128144 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 133 ttttcgaggagtaaccttccagagatgga 161 |||||||||||||| |||||||| ||||| Sbjct: 128541 ttttcgaggagtaatcttccagaaatgga 128513
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 61.9 bits (31), Expect = 3e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 61 gaggagagggcgaatgagtcggccgccatgatcgccaagtaccccggcaggatccccgt 119 ||||||||||| || ||||||||| ||||||||||| ||||||| |||||||||||| Sbjct: 1335 gaggagagggccaaggagtcggcctccatgatcgcctcctaccccgccaggatccccgt 1277 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 ccttcaagaaggagttcaccctgg 61 |||||||| ||||||||||||||| Sbjct: 1430 ccttcaaggaggagttcaccctgg 1407
>emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131346 Score = 61.9 bits (31), Expect = 3e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 61 gaggagagggcgaatgagtcggccgccatgatcgccaagtaccccggcaggatccccgt 119 ||||||||||| || ||||||||| ||||||||||| ||||||| |||||||||||| Sbjct: 1335 gaggagagggccaaggagtcggcctccatgatcgcctcctaccccgccaggatccccgt 1277 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 ccttcaagaaggagttcaccctgg 61 |||||||| ||||||||||||||| Sbjct: 1430 ccttcaaggaggagttcaccctgg 1407
>gb|AY058219.1| Pichia pastoris Paz2 (PAZ2) gene, complete cds Length = 378 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Plus Query: 149 ttccagagatggaaaagaggaagtacctggttccatgcgac 189 |||||||| | || ||| ||||||||||||||||||||||| Sbjct: 122 ttccagaggtagataagcggaagtacctggttccatgcgac 162
>gb|AF209724.1|AF209724 Oryctolagus cuniculus chloride channel CLC-6 (CLCN6) mRNA, complete cds Length = 2610 Score = 48.1 bits (24), Expect = 0.039 Identities = 24/24 (100%) Strand = Plus / Plus Query: 19 aggaggaggaggatgaaatccttc 42 |||||||||||||||||||||||| Sbjct: 107 aggaggaggaggatgaaatccttc 130
>emb|CR855238.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0136O08-OSIGBa0153H12, complete sequence Length = 148322 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 560 tgcttgcaaagtcctctgggaa 581 |||||||||||||||||||||| Sbjct: 112302 tgcttgcaaagtcctctgggaa 112323
>emb|CR855052.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0132O24, complete sequence Length = 75454 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 aagaagcagcaaggaggaggag 29 |||||||||||||||||||||| Sbjct: 44306 aagaagcagcaaggaggaggag 44285
>gb|AC115686.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1325D05, complete sequence Length = 169500 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 gaagcagcaaggaggaggagga 31 |||||||||||||||||||||| Sbjct: 69004 gaagcagcaaggaggaggagga 68983
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 gaagcagcaaggaggaggagga 31 |||||||||||||||||||||| Sbjct: 9119720 gaagcagcaaggaggaggagga 9119741
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 560 tgcttgcaaagtcctctgggaa 581 |||||||||||||||||||||| Sbjct: 4568326 tgcttgcaaagtcctctgggaa 4568347 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 aagaagcagcaaggaggaggag 29 |||||||||||||||||||||| Sbjct: 4976708 aagaagcagcaaggaggaggag 4976687
>gb|DQ078759.1| Saccharum officinarum microtubule associated protein 1A/1B light chain 3 mRNA, partial cds Length = 303 Score = 44.1 bits (22), Expect = 0.60 Identities = 34/38 (89%) Strand = Plus / Plus Query: 331 gaggatggcttcctctacatgtgctacagcagcgagaa 368 ||||| ||||||||||||||| ||||||| ||||||| Sbjct: 250 gaggacggcttcctctacatgacctacagcggcgagaa 287
>emb|AL662990.3|OSJN00194 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015C06, complete sequence Length = 147676 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 aagaagcagcaaggaggaggag 29 |||||||||||||||||||||| Sbjct: 89115 aagaagcagcaaggaggaggag 89094
>emb|AL662949.4|OSJN00144 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0115I21, complete sequence Length = 127162 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 560 tgcttgcaaagtcctctgggaa 581 |||||||||||||||||||||| Sbjct: 49152 tgcttgcaaagtcctctgggaa 49131
>ref|XM_417327.2| PREDICTED: Gallus gallus hypothetical LOC419142 (LOC419142), mRNA Length = 1486 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 gaggatggcttcctctacatg 351 ||||||||||||||||||||| Sbjct: 375 gaggatggcttcctctacatg 395
>dbj|AK240181.1| Sus scrofa mRNA, clone:UTR010038F11, expressed in uterus Length = 980 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 gaggatggcttcctctacatg 351 ||||||||||||||||||||| Sbjct: 465 gaggatggcttcctctacatg 485
>ref|NM_001057632.1| Oryza sativa (japonica cultivar-group) Os03g0719700 (Os03g0719700) mRNA, complete cds Length = 3648 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 ctgcctgcaattcagcaagcc 409 ||||||||||||||||||||| Sbjct: 1300 ctgcctgcaattcagcaagcc 1320
>ref|NM_001057631.1| Oryza sativa (japonica cultivar-group) Os03g0719800 (Os03g0719800) mRNA, complete cds Length = 3900 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 ctgcctgcaattcagcaagcc 409 ||||||||||||||||||||| Sbjct: 2047 ctgcctgcaattcagcaagcc 2027
>ref|XM_001167935.1| PREDICTED: Pan troglodytes Cdc42 effector protein 4, transcript variant 3 (CDC42EP4), mRNA Length = 3527 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 aggaggaggaggatgaaatcc 39 ||||||||||||||||||||| Sbjct: 1370 aggaggaggaggatgaaatcc 1390
>ref|XM_511657.2| PREDICTED: Pan troglodytes Cdc42 effector protein 4, transcript variant 4 (CDC42EP4), mRNA Length = 3430 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 aggaggaggaggatgaaatcc 39 ||||||||||||||||||||| Sbjct: 1273 aggaggaggaggatgaaatcc 1293
>ref|XM_001167884.1| PREDICTED: Pan troglodytes Cdc42 effector protein 4, transcript variant 2 (CDC42EP4), mRNA Length = 3482 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 aggaggaggaggatgaaatcc 39 ||||||||||||||||||||| Sbjct: 1325 aggaggaggaggatgaaatcc 1345
>ref|XM_001167847.1| PREDICTED: Pan troglodytes Cdc42 effector protein 4, transcript variant 1 (CDC42EP4), mRNA Length = 3561 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 aggaggaggaggatgaaatcc 39 ||||||||||||||||||||| Sbjct: 1404 aggaggaggaggatgaaatcc 1424
>emb|CR936976.15| Zebrafish DNA sequence from clone CH211-286N19 in linkage group 7, complete sequence Length = 154888 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 593 tatgtgaataaaagtgttgattatg 617 ||||||||||||||| ||||||||| Sbjct: 15944 tatgtgaataaaagttttgattatg 15968
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 ggtaacctgatgggcagcgtg 309 ||||||||||||||||||||| Sbjct: 4975209 ggtaacctgatgggcagcgtg 4975229
>gb|DQ213289.1| Taeniopygia guttata clone 0061P0020D04 microtubule-associated protein 1 light chain 3 alpha-like mRNA, complete sequence Length = 1100 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 gaggatggcttcctctacatg 351 ||||||||||||||||||||| Sbjct: 369 gaggatggcttcctctacatg 389
>gb|BC106474.1| Xenopus laevis hypothetical protein MGC131197, mRNA (cDNA clone MGC:131197 IMAGE:7210851), complete cds Length = 849 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 ggaagtacctggttccatgcgacat 191 |||||||||||||||||| |||||| Sbjct: 141 ggaagtacctggttccatccgacat 165
>gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone OSJNBa0031O09, complete sequence Length = 161339 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 ctgcctgcaattcagcaagcc 409 ||||||||||||||||||||| Sbjct: 143057 ctgcctgcaattcagcaagcc 143077
>gb|AC147426.2| Oryza sativa chromosome 3 B1377B10 genomic sequence, complete sequence Length = 184366 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 ctgcctgcaattcagcaagcc 409 ||||||||||||||||||||| Sbjct: 61040 ctgcctgcaattcagcaagcc 61060
>ref|NM_012121.4| Homo sapiens CDC42 effector protein (Rho GTPase binding) 4 (CDC42EP4), mRNA Length = 3121 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 aggaggaggaggatgaaatcc 39 ||||||||||||||||||||| Sbjct: 1267 aggaggaggaggatgaaatcc 1287
>gb|AC107755.12| Mus musculus chromosome 9, clone RP23-225C11, complete sequence Length = 178844 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 agaagcagcaaggaggaggag 29 ||||||||||||||||||||| Sbjct: 61081 agaagcagcaaggaggaggag 61061
>dbj|AK097835.1| Homo sapiens cDNA FLJ40516 fis, clone TESTI2046569, highly similar to Homo sapiens Borg4 mRNA Length = 2879 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 aggaggaggaggatgaaatcc 39 ||||||||||||||||||||| Sbjct: 1046 aggaggaggaggatgaaatcc 1066
>dbj|AK027385.1| Homo sapiens cDNA FLJ14479 fis, clone MAMMA1002143, highly similar to Homo sapiens Cdc42 effector protein 4 mRNA Length = 3087 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 aggaggaggaggatgaaatcc 39 ||||||||||||||||||||| Sbjct: 1258 aggaggaggaggatgaaatcc 1278
>dbj|AB109891.1| Oryza sativa (japonica cultivar-group) PHYA mRNA for phytochrome A, complete cds Length = 3866 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 ctgcctgcaattcagcaagcc 409 ||||||||||||||||||||| Sbjct: 2002 ctgcctgcaattcagcaagcc 1982
>gb|BC010451.1| Homo sapiens CDC42 effector protein (Rho GTPase binding) 4, mRNA (cDNA clone MGC:17125 IMAGE:4181539), complete cds Length = 3072 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 aggaggaggaggatgaaatcc 39 ||||||||||||||||||||| Sbjct: 1243 aggaggaggaggatgaaatcc 1263
>ref|NM_001046175.1| Bos taurus similar to microtubule-associated protein 1 light chain 3 alpha (MGC138125), mRNA gb|BC113348.1| Bos taurus similar to microtubule-associated protein 1 light chain 3 alpha, mRNA (cDNA clone MGC:138125 IMAGE:8086938), complete cds Length = 984 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 gaggatggcttcctctacatg 351 ||||||||||||||||||||| Sbjct: 450 gaggatggcttcctctacatg 470
>gb|AC087301.8| Homo sapiens chromosome 17, clone RP11-661C3, complete sequence Length = 229153 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 aggaggaggaggatgaaatcc 39 ||||||||||||||||||||| Sbjct: 163901 aggaggaggaggatgaaatcc 163921
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 ctgcctgcaattcagcaagcc 409 ||||||||||||||||||||| Sbjct: 28969167 ctgcctgcaattcagcaagcc 28969187
>emb|AJ313100.1|TAE313100 Triticum aestivum partial phya2 gene for phytochrome A, exons 1-2 Length = 2645 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 ctgcctgcaattcagcaagcc 409 ||||||||||||||||||||| Sbjct: 1609 ctgcctgcaattcagcaagcc 1589
>emb|AJ313099.1|TAE313099 Triticum aestivum phya1 gene for phytochrome A, exons 1-4 Length = 6323 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 ctgcctgcaattcagcaagcc 409 ||||||||||||||||||||| Sbjct: 3748 ctgcctgcaattcagcaagcc 3728
>gb|AC156393.12| Mus musculus 10 BAC RP24-315E6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 164936 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 9 agaagcagcaaggaggaggaggatgaaat 37 |||||||| ||||||||||| |||||||| Sbjct: 96723 agaagcaggaaggaggaggaagatgaaat 96751
>gb|AC158639.8| Mus musculus 10 BAC RP24-73H17 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 199191 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 9 agaagcagcaaggaggaggaggatgaaat 37 |||||||| ||||||||||| |||||||| Sbjct: 109245 agaagcaggaaggaggaggaagatgaaat 109217
>emb|AL713921.15| Mouse DNA sequence from clone RP23-475A8 on chromosome 11 Contains a novel gene and a CpG island, complete sequence Length = 214065 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 agcagcaaggaggaggaggatgaaa 36 |||||||| |||||||||||||||| Sbjct: 199097 agcagcaaagaggaggaggatgaaa 199121
>dbj|AK072482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125J06, full insert sequence Length = 3903 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 ctgcctgcaattcagcaagcc 409 ||||||||||||||||||||| Sbjct: 2050 ctgcctgcaattcagcaagcc 2030
>dbj|AK065707.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035O04, full insert sequence Length = 3649 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 ctgcctgcaattcagcaagcc 409 ||||||||||||||||||||| Sbjct: 1301 ctgcctgcaattcagcaagcc 1321
>ref|XM_316251.2| Anopheles gambiae str. PEST ENSANGP00000017693 (ENSANGG00000015204), partial mRNA Length = 3088 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggag 63 ||||||||||||||||||||| Sbjct: 1472 aagaaggagttcaccctggag 1492
>emb|X14172.1|OSPHY18 Rice phy 18 gene for phytochrome Length = 9979 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 ctgcctgcaattcagcaagcc 409 ||||||||||||||||||||| Sbjct: 6483 ctgcctgcaattcagcaagcc 6463
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 ggtaacctgatgggcagcgtg 309 ||||||||||||||||||||| Sbjct: 734186 ggtaacctgatgggcagcgtg 734166
>gb|AY610451.1| Sus scrofa clone rmed11c_g21.y1.abd, mRNA sequence Length = 644 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 gaggatggcttcctctacatg 351 ||||||||||||||||||||| Sbjct: 446 gaggatggcttcctctacatg 466
>gb|AC132121.3| Mus musculus BAC clone RP24-62L21 from 13, complete sequence Length = 204277 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 aagaagcagcaaggaggagga 28 ||||||||||||||||||||| Sbjct: 3292 aagaagcagcaaggaggagga 3272
>gb|BC002774.1| Homo sapiens CDC42 effector protein (Rho GTPase binding) 4, mRNA (cDNA clone MGC:3740 IMAGE:3617435), complete cds Length = 3122 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 aggaggaggaggatgaaatcc 39 ||||||||||||||||||||| Sbjct: 1267 aggaggaggaggatgaaatcc 1287
>gb|AC140415.3| Mus musculus BAC clone RP23-127A20 from 13, complete sequence Length = 221245 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 aagaagcagcaaggaggagga 28 ||||||||||||||||||||| Sbjct: 200272 aagaagcagcaaggaggagga 200252
>dbj|AB042237.1| Homo sapiens Borg4 mRNA, complete cds Length = 2732 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 aggaggaggaggatgaaatcc 39 ||||||||||||||||||||| Sbjct: 1190 aggaggaggaggatgaaatcc 1210
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 ggtaacctgatgggcagcgtg 309 ||||||||||||||||||||| Sbjct: 897367 ggtaacctgatgggcagcgtg 897347
>emb|CR388221.20| Zebrafish DNA sequence from clone DKEY-18L16, complete sequence Length = 231980 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 501 gaagataccatatgtattatttta 524 ||||| |||||||||||||||||| Sbjct: 230860 gaagaaaccatatgtattatttta 230883
>dbj|AK232509.1| Sus scrofa mRNA, clone:LVR010058E06, expressed in liver Length = 1130 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 cagcaaggaggaggaggatgaaat 37 |||||||||||||||||| ||||| Sbjct: 2 cagcaaggaggaggaggaggaaat 25
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 aagaaggagttcaccctggaggag 66 |||||||||||||| ||||||||| Sbjct: 18000749 aagaaggagttcacgctggaggag 18000726
>tpg|BK005282.1| TPA_inf: Apis mellifera troponin H (TpnH) and troponin I (TpnI) genes, complete cds, alternatively spliced Length = 24061 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 ||||||||||||||||| |||||| Sbjct: 15215 aagaaggagttcaccctcgaggag 15238
>tpg|BK001655.1| TPA_inf: Drosophila pseudoobscura troponin I (TpnI) gene, complete cds, alternatively spliced Length = 12917 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 |||||||||||||| ||||||||| Sbjct: 11753 aagaaggagttcacactggaggag 11776
>ref|XM_001087264.1| PREDICTED: Macaca mulatta presenilin 2 (PSEN2), mRNA Length = 3084 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 agcagcaaggaggaggagga 31 |||||||||||||||||||| Sbjct: 397 agcagcaaggaggaggagga 416
>gb|AC182666.2| Populus trichocarpa clone Pop1-18F23, complete sequence Length = 105222 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 599 aataaaagtgttgattatga 618 |||||||||||||||||||| Sbjct: 39830 aataaaagtgttgattatga 39811
>ref|NM_001040256.1| Apis mellifera troponin I (TpnI), mRNA Length = 767 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 ||||||||||||||||| |||||| Sbjct: 570 aagaaggagttcaccctcgaggag 593
>gb|DQ122902.1| Chlamydomonas incerta microtubule-associated protein-related protein mRNA, complete cds Length = 1101 Score = 40.1 bits (20), Expect = 9.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 331 gaggatggcttcctctacatgtgctacagcagcgagaagacgtt 374 ||||| |||||||||||||| ||||||| ||||||| ||||| Sbjct: 394 gaggacggcttcctctacatcacctacagcggcgagaacacgtt 437
>gb|AC122313.4| Mus musculus BAC clone RP23-300N8 from chromosome 13, complete sequence Length = 224940 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 agaaggagttcaccctggag 63 |||||||||||||||||||| Sbjct: 179619 agaaggagttcaccctggag 179638
>gb|AY439184.1| Drosophila virilis troponin I-a1 (TpnI) mRNA, partial cds, alternatively spliced Length = 632 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 |||||||||||||| ||||||||| Sbjct: 537 aagaaggagttcacactggaggag 560
>gb|AY439183.1| Drosophila virilis troponin I-b1 (TpnI) mRNA, complete cds, alternatively spliced Length = 873 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 |||||||||||||| ||||||||| Sbjct: 735 aagaaggagttcacactggaggag 758
>gb|AY439182.1| Drosophila subobscura troponin I-a1 (TpnI) mRNA, partial cds, alternatively spliced Length = 634 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 |||||||||||||| ||||||||| Sbjct: 539 aagaaggagttcacactggaggag 562
>gb|AY439181.1| Drosophila subobscura troponin I-b2 (TpnI) mRNA, complete cds, alternatively spliced Length = 677 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 |||||||||||||| ||||||||| Sbjct: 539 aagaaggagttcacactggaggag 562
>gb|AY439180.1| Drosophila subobscura troponin I-b1 (TpnI) mRNA, complete cds, alternatively spliced Length = 881 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 |||||||||||||| ||||||||| Sbjct: 743 aagaaggagttcacactggaggag 766
>ref|NM_203912.1| Xenopus tropicalis hypothetical protein MGC75586 (MGC75586), mRNA gb|BC063898.1| Xenopus tropicalis hypothetical protein MGC75586, mRNA (cDNA clone MGC:75586 IMAGE:5379179), complete cds Length = 2979 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 aggaggaggaggatgaaatc 38 |||||||||||||||||||| Sbjct: 939 aggaggaggaggatgaaatc 958
>ref|XM_598445.2| PREDICTED: Bos taurus similar to Chloride channel protein 6 (ClC-6), transcript variant 1 (LOC520210), mRNA Length = 2797 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 aggaggaggaggatgaaatccttc 42 |||||||||||||||| ||||||| Sbjct: 291 aggaggaggaggatgagatccttc 314
>ref|XM_877679.1| PREDICTED: Bos taurus similar to Chloride channel protein 6 (ClC-6), transcript variant 3 (LOC520210), mRNA Length = 1111 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 aggaggaggaggatgaaatccttc 42 |||||||||||||||| ||||||| Sbjct: 291 aggaggaggaggatgagatccttc 314
>ref|XM_877634.1| PREDICTED: Bos taurus similar to Chloride channel protein 6 (ClC-6), transcript variant 2 (LOC520210), mRNA Length = 1567 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 aggaggaggaggatgaaatccttc 42 |||||||||||||||| ||||||| Sbjct: 291 aggaggaggaggatgagatccttc 314
>gb|AC091473.2| Mus musculus chromosome X clones RP21-114F21, RP21-430D6 complete sequence Length = 221860 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ggcaagaagcagcaaggagg 24 |||||||||||||||||||| Sbjct: 137901 ggcaagaagcagcaaggagg 137882
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggtaacctgatgggcagcgt 308 |||||||||||||||||||| Sbjct: 953986 ggtaacctgatgggcagcgt 953967
>gb|AC122194.4| Mus musculus BAC clone RP23-47D6 from chromosome 13, complete sequence Length = 192347 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 agaaggagttcaccctggag 63 |||||||||||||||||||| Sbjct: 178283 agaaggagttcaccctggag 178302
>gb|AC105052.3| Homo sapiens BAC clone RP11-577H5 from 7, complete sequence Length = 186465 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 aagaagcagcaaggaggaggagga 31 |||||| ||||||||||||||||| Sbjct: 131738 aagaaggagcaaggaggaggagga 131715
>gb|AC006477.4| Homo sapiens PAC clone RP4-802G15 from 7, complete sequence Length = 121520 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 aagaagcagcaaggaggaggagga 31 |||||| ||||||||||||||||| Sbjct: 7639 aagaaggagcaaggaggaggagga 7616
>ref|NM_167608.1| Drosophila melanogaster wings up A CG7178-RG, transcript variant G (wupA), mRNA Length = 1355 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 |||||||||||||| ||||||||| Sbjct: 840 aagaaggagttcacgctggaggag 863
>ref|NM_167607.1| Drosophila melanogaster wings up A CG7178-RA, transcript variant A (wupA), mRNA Length = 1172 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 |||||||||||||| ||||||||| Sbjct: 657 aagaaggagttcacgctggaggag 680
>ref|NM_167606.1| Drosophila melanogaster wings up A CG7178-RB, transcript variant B (wupA), mRNA Length = 1172 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 |||||||||||||| ||||||||| Sbjct: 657 aagaaggagttcacgctggaggag 680
>ref|NM_167605.1| Drosophila melanogaster wings up A CG7178-RE, transcript variant E (wupA), mRNA Length = 1138 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 |||||||||||||| ||||||||| Sbjct: 623 aagaaggagttcacgctggaggag 646
>ref|NM_167604.1| Drosophila melanogaster wings up A CG7178-RD, transcript variant D (wupA), mRNA Length = 1172 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 |||||||||||||| ||||||||| Sbjct: 657 aagaaggagttcacgctggaggag 680
>ref|NM_167603.1| Drosophila melanogaster wings up A CG7178-RF, transcript variant F (wupA), mRNA Length = 1138 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 |||||||||||||| ||||||||| Sbjct: 623 aagaaggagttcacgctggaggag 646
>gb|AC007000.2| Homo sapiens BAC clone RP11-467H10 from 7, complete sequence Length = 196660 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 aagaagcagcaaggaggaggagga 31 |||||| ||||||||||||||||| Sbjct: 129725 aagaaggagcaaggaggaggagga 129748
>ref|NM_078674.2| Drosophila melanogaster wings up A CG7178-RC, transcript variant C (wupA), mRNA Length = 1172 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 |||||||||||||| ||||||||| Sbjct: 657 aagaaggagttcacgctggaggag 680
>ref|XM_754866.1| Ustilago maydis 521 hypothetical protein (UM03812.1) partial mRNA Length = 2445 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 cggtgcatgatgctgcttgc 566 |||||||||||||||||||| Sbjct: 10 cggtgcatgatgctgcttgc 29
>gb|AY122145.1| Drosophila melanogaster HL08042 full insert cDNA Length = 950 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 |||||||||||||| ||||||||| Sbjct: 594 aagaaggagttcacgctggaggag 617
>dbj|AK048554.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130073I17 product:unclassifiable, full insert sequence Length = 2962 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 aggaggaggaggatgaaatccttc 42 ||||||||||||| |||||||||| Sbjct: 1009 aggaggaggaggaggaaatccttc 986
>gb|AC098851.5| Homo sapiens BAC clone RP13-574L22 from 7, complete sequence Length = 161470 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 aagaagcagcaaggaggaggagga 31 |||||| ||||||||||||||||| Sbjct: 36229 aagaaggagcaaggaggaggagga 36252
>emb|AL513205.8| Human DNA sequence from clone RP11-432E18 on chromosome 1 Contains the OR6K1P olfactory receptor, family 6, subfamily K, member 1 pseudogene, the OR6K2 gene for olfactory receptor, family 6, subfamily K, member 2, the OR6K3 gene for olfactory receptor, family 6, subfamily K, member 3, the OR6K4P olfactory receptor, family 6, subfamily K, member 4 pseudogene, the OR6K5P olfactory receptor, family 6, subfamily K, member 5 pseudogene, the OR6K6 gene for olfactory receptor, family 6, subfamily K, member 6, the OR6N1 gene for olfactory receptor, family 6, subfamily N, member 1, the OR6N2 gene for olfactory receptor, family 6, subfamily N, member 2, the OR2AQ1P olfactory receptor, family 2, subfamily AQ, member 1 pseudogene, the OR10AA1P olfactory receptor, family 10, subfamily AA, member 1 pseudogene and the MNDA gene for myeloid cell nuclear differentiation antigen, complete sequence Length = 180999 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 458 tgttaaatgtttagttgatcagtagcag 485 ||||||||||||||| || ||||||||| Sbjct: 53283 tgttaaatgtttagtggaacagtagcag 53310
>emb|AL359732.12| Human DNA sequence from clone RP11-450B15 on chromosome 1 Contains the 5' end of the PSEN2 gene for presenilin 2 (Alzheimer disease 4), complete sequence Length = 93426 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 agcagcaaggaggaggagga 31 |||||||||||||||||||| Sbjct: 86617 agcagcaaggaggaggagga 86636
>gb|AC162805.2| Mus musculus BAC clone RP23-109O16 from chromosome 17, complete sequence Length = 183193 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 aggaggaggaggatgaaatccttc 42 ||||||||||||| |||||||||| Sbjct: 93182 aggaggaggaggaggaaatccttc 93159
>gb|AC011614.8| Drosophila melanogaster, chromosome X, region 16F-17A, BAC clone BACR48L05, complete sequence Length = 177138 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 |||||||||||||| ||||||||| Sbjct: 131766 aagaaggagttcacgctggaggag 131789
>gb|S74550.1| Ig V kappa =rheumatoid factor RF3-5A {clone I} [mice, MRL/lpr, spleen, B cell hybridoma, mRNA Partial Mutant, 313 nt] Length = 313 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 603 aaagtgttgattatgatggc 622 |||||||||||||||||||| Sbjct: 53 aaagtgttgattatgatggc 72
>emb|X58188.1|DMTROPONI D.melanogaster tn1 gene Length = 12871 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 |||||||||||||| ||||||||| Sbjct: 10646 aagaaggagttcacgctggaggag 10669
>emb|X59376.1|DMHELDUP D.melanogaster heldup gene for troponin I Length = 783 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aagaaggagttcaccctggaggag 66 |||||||||||||| ||||||||| Sbjct: 605 aagaaggagttcacgctggaggag 628
>gb|AC011454.6|AC011454 Homo sapiens chromosome 19 clone CTC-347E6, complete sequence Length = 163120 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aaggaggatggcttcctcta 347 |||||||||||||||||||| Sbjct: 18623 aaggaggatggcttcctcta 18604
>gb|AC156954.5| Mus musculus 6 BAC RP24-343M7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 179140 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 aagaagcagcaaggaggaggagga 31 ||||||||| |||||||||||||| Sbjct: 123043 aagaagcaggaaggaggaggagga 123066
>ref|NM_001031110.1| Gallus gallus similar to RIKEN cDNA 1200013B08 (LOC422138), mRNA emb|AJ720161.1| Gallus gallus mRNA for hypothetical protein, clone 11n1 Length = 2164 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 agaaggagttcaccctggaggaga 67 |||||||||||| ||||||||||| Sbjct: 222 agaaggagttcaacctggaggaga 245
>gb|AF099664.1|AF099664 Homo sapiens Cdc42 effector protein 4 mRNA, complete cds Length = 1170 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 aggaggaggaggatgaaatc 38 |||||||||||||||||||| Sbjct: 1124 aggaggaggaggatgaaatc 1143
>gb|AC019172.4| Homo sapiens BAC clone RP11-178E6 from 2, complete sequence Length = 176983 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 caaggaggaggaggatgaaa 36 |||||||||||||||||||| Sbjct: 53857 caaggaggaggaggatgaaa 53876
>emb|BX664714.16| Zebrafish DNA sequence from clone DKEY-204C3 in linkage group 7, complete sequence Length = 159633 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 501 gaagataccatatgtattatttta 524 ||||| |||||||||||||||||| Sbjct: 101597 gaagaaaccatatgtattatttta 101574
>gb|AC091683.53| Mus musculus strain C57BL/6J clone rp23-155l11 map 13, complete sequence Length = 236314 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 agaaggagttcaccctggag 63 |||||||||||||||||||| Sbjct: 53748 agaaggagttcaccctggag 53767
>gb|AC153903.5| Mus musculus 6 BAC RP23-20C5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210370 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 aagaagcagcaaggaggaggagga 31 ||||||||| |||||||||||||| Sbjct: 36939 aagaagcaggaaggaggaggagga 36962
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 cgccaagtaccccggcagga 112 |||||||||||||||||||| Sbjct: 1349509 cgccaagtaccccggcagga 1349490
>emb|CR848100.2| Xenopus tropicalis finished cDNA, clone TGas079d07 Length = 2517 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 aggaggaggaggatgaaatc 38 |||||||||||||||||||| Sbjct: 832 aggaggaggaggatgaaatc 851
>emb|AL928731.11| Mouse DNA sequence from clone RP23-171N20 on chromosome X, complete sequence Length = 114243 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ggcaagaagcagcaaggagg 24 |||||||||||||||||||| Sbjct: 111333 ggcaagaagcagcaaggagg 111314
>emb|AL929161.10| Zebrafish DNA sequence from clone CH211-93A19, complete sequence Length = 197027 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 501 gaagataccatatgtattatttta 524 ||||| |||||||||||||||||| Sbjct: 120868 gaagaaaccatatgtattatttta 120845
>gb|AC142099.3| Mus musculus BAC clone RP24-350H4 from 6, complete sequence Length = 167731 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 agcagcaaggaggaggagga 31 |||||||||||||||||||| Sbjct: 59389 agcagcaaggaggaggagga 59370
>gb|U50871.1|HSU50871 Human familial Alzheimer's disease (STM2) gene, complete cds Length = 86640 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 agcagcaaggaggaggagga 31 |||||||||||||||||||| Sbjct: 27253 agcagcaaggaggaggagga 27272
>emb|AL390254.6|CNS06C7M Human chromosome 14 DNA sequence BAC R-991C1 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 177792 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 593 tatgtgaataaaagtgttga 612 |||||||||||||||||||| Sbjct: 115419 tatgtgaataaaagtgttga 115438
>gb|L09042.1|MUSIGVACR Mus musculus Ig rearranged anti-Sm hybridoma mRNA V-region sequence Length = 317 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 603 aaagtgttgattatgatggc 622 |||||||||||||||||||| Sbjct: 63 aaagtgttgattatgatggc 82
>gb|L09040.1|MUSIGVACP Mus musculus Ig rearranged anti-Sm hybridoma mRNA V-region sequence Length = 336 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 603 aaagtgttgattatgatggc 622 |||||||||||||||||||| Sbjct: 80 aaagtgttgattatgatggc 99
>dbj|AP002533.1| Homo sapiens genomic DNA, chromosome 1q22-q23, CD1 region, section 2/4 Length = 300000 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 458 tgttaaatgtttagttgatcagtagcag 485 ||||||||||||||| || ||||||||| Sbjct: 272425 tgttaaatgtttagtggaacagtagcag 272452
>dbj|AB045361.1| Homo sapiens genomic DNA, chromosome 1q22-q23, clone:713i11, complete sequence Length = 148081 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 458 tgttaaatgtttagttgatcagtagcag 485 ||||||||||||||| || ||||||||| Sbjct: 19528 tgttaaatgtttagtggaacagtagcag 19555
>emb|AL773550.4| Mouse DNA sequence from clone RP23-433P3 on chromosome 4, complete sequence Length = 142900 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 aggaggaggaggatgaaatccttc 42 ||||||||||||| |||||||||| Sbjct: 92287 aggaggaggaggaggaaatccttc 92264 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 115,965,134 Number of extensions: 7309276 Number of successful extensions: 220252 Number of sequences better than 10.0: 123 Number of HSP's gapped: 220252 Number of HSP's successfully gapped: 141 Length of query: 637 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 615 Effective length of database: 18,508,616,841 Effective search space: 11382799357215 Effective search space used: 11382799357215 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
