>LOC_Os03g02960:12003.t00183:unspliced-genomic nascent polypeptide-associated complex alpha subunit-like protein,|
putative, expressed
Length = 2251
Score = 93.2 bits (197), Expect(3) = 4e-49
Identities = 43/44 (97%), Positives = 43/44 (97%)
Frame = +3 / +1
Query: 603 TGIEARDIDLVMTQASVSRAKAVKALKAHDGDIVSAIMELTA*S 734
TGIE RDIDLVMTQASVSRAKAVKALKAHDGDIVSAIMELTA*S
Sbjct: 1033 TGIEPRDIDLVMTQASVSRAKAVKALKAHDGDIVSAIMELTA*S 1164
Score = 85.4 bits (180), Expect(3) = 4e-49
Identities = 39/55 (70%), Positives = 39/55 (70%)
Frame = +3 / +1
Query: 372 RAKNILFVVSKPDVFKSPTSETYVIFGEAKIEDXXXXXXXXXXXXFRMQDLSKAM 536
R ILFVVSKPDVFKSPTSETYVIFGEAKIED FRMQDLSK M
Sbjct: 811 RVFQILFVVSKPDVFKSPTSETYVIFGEAKIEDLSSQLQAQAAQQFRMQDLSKVM 975
Score = 55.6 bits (115), Expect(3) = 4e-49
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +3 / +1
Query: 315 AMMKLGMKPVTGVSRITIKRAKNI 386
AMMKLGMKPVTGVSRITIKRAKN+
Sbjct: 667 AMMKLGMKPVTGVSRITIKRAKNV 738
Score = 106 bits (227), Expect(3) = 1e-46
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = -3 / -3
Query: 535 IALLRSCILNCCAACACSCELRSSILASPNITYVSDVGLLNTSGFDTTN 389
I LLRSCILNCCAACACS ELRSSILASPN+TYVSDVGLL TSG DTTN
Sbjct: 974 ITLLRSCILNCCAACACSWELRSSILASPNMTYVSDVGLLKTSGLDTTN 828
Score = 74.4 bits (156), Expect(3) = 1e-46
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = -3 / -3
Query: 382 FLALLMVILLTPVTGFIPSFIMALRLFFSLRLCFD 278
FLALLMVILLTPVTGFIPSFIMALRLFFSL LC +
Sbjct: 734 FLALLMVILLTPVTGFIPSFIMALRLFFSLLLCLE 630
Score = 44.6 bits (91), Expect(3) = 1e-46
Identities = 22/35 (62%), Positives = 22/35 (62%)
Frame = -3 / -3
Query: 727 AVSSMMALTMSPSCXXXXXXXXXXXXXACVMTRSM 623
AVSSMMALTMSPSC ACVMTRSM
Sbjct: 1157 AVSSMMALTMSPSCALSALTALARDTLACVMTRSM 1053
Score = 80.8 bits (170), Expect(2) = 8e-25
Identities = 35/49 (71%), Positives = 37/49 (75%)
Frame = +2 / +3
Query: 389 VRGVEAGRVQEPDVGDVRDIRGGQDRGPELXXXXXXXXXVQDAGPEQGD 535
VRGV+A R+QEPDVGDVR IRGGQDRGPEL VQDA PEQGD
Sbjct: 828 VRGVQA*RLQEPDVGDVRHIRGGQDRGPELPAAGAGRAAVQDARPEQGD 974
Score = 53.3 bits (110), Expect(2) = 8e-25
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = +2 / +3
Query: 311 QGHDEARDEARHRRQQDYHQESQE 382
QGHDEAR+E RH QQDYHQESQE
Sbjct: 663 QGHDEARNETRHGSQQDYHQESQE 734
Score = 51.0 bits (105), Expect(3) = 1e-12
Identities = 21/24 (87%), Positives = 21/24 (87%)
Frame = -2 / -2
Query: 458 GLPEYHVRLRRRALEHVRLRHHEQ 387
GLPEY VRLRRRALE VRL HHEQ
Sbjct: 897 GLPEYDVRLRRRALEDVRLGHHEQ 826
Score = 35.4 bits (71), Expect(3) = 1e-12
Identities = 19/36 (52%), Positives = 20/36 (55%)
Frame = -2 / -2
Query: 728 GGELHDGADDVAVVRLEXXXXXXXXXXXXXXDEVDV 621
G ELHDGA +VAVVRLE DEVDV
Sbjct: 1158 GRELHDGAHNVAVVRLERLDGLGPRHAGLRHDEVDV 1051
Score = 30.9 bits (61), Expect(3) = 1e-12
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -2 / -2
Query: 383 VLGSLDGNPADAGD 342
+LGSLDGNPAD+ D
Sbjct: 735 ILGSLDGNPADSRD 694
>LOC_Os03g02970:12003.t00184:unspliced-genomic endoribonuclease Dicer, putative, expressed|
Length = 9765
Score = 93.2 bits (197), Expect(2) = 9e-38
Identities = 43/44 (97%), Positives = 43/44 (97%)
Frame = +3 / -3
Query: 603 TGIEARDIDLVMTQASVSRAKAVKALKAHDGDIVSAIMELTA*S 734
TGIE RDIDLVMTQASVSRAKAVKALKAHDGDIVSAIMELTA*S
Sbjct: 9553 TGIEPRDIDLVMTQASVSRAKAVKALKAHDGDIVSAIMELTA*S 9422
Score = 84.5 bits (178), Expect(2) = 9e-38
Identities = 38/51 (74%), Positives = 38/51 (74%)
Frame = +3 / -3
Query: 384 ILFVVSKPDVFKSPTSETYVIFGEAKIEDXXXXXXXXXXXXFRMQDLSKAM 536
ILFVVSKPDVFKSPTSETYVIFGEAKIED FRMQDLSK M
Sbjct: 9763 ILFVVSKPDVFKSPTSETYVIFGEAKIEDLSSQLQAQAAQQFRMQDLSKVM 9611
Score = 106 bits (227), Expect(2) = 6e-30
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = -3 / +3
Query: 535 IALLRSCILNCCAACACSCELRSSILASPNITYVSDVGLLNTSGFDTTN 389
I LLRSCILNCCAACACS ELRSSILASPN+TYVSDVGLL TSG DTTN
Sbjct: 9612 ITLLRSCILNCCAACACSWELRSSILASPNMTYVSDVGLLKTSGLDTTN 9758
Score = 44.6 bits (91), Expect(2) = 6e-30
Identities = 22/35 (62%), Positives = 22/35 (62%)
Frame = -3 / +3
Query: 727 AVSSMMALTMSPSCXXXXXXXXXXXXXACVMTRSM 623
AVSSMMALTMSPSC ACVMTRSM
Sbjct: 9429 AVSSMMALTMSPSCALSALTALARDTLACVMTRSM 9533
Score = 80.8 bits (170), Expect = 1e-14
Identities = 35/49 (71%), Positives = 37/49 (75%)
Frame = +2 / -2
Query: 389 VRGVEAGRVQEPDVGDVRDIRGGQDRGPELXXXXXXXXXVQDAGPEQGD 535
VRGV+A R+QEPDVGDVR IRGGQDRGPEL VQDA PEQGD
Sbjct: 9758 VRGVQA*RLQEPDVGDVRHIRGGQDRGPELPAAGAGRAAVQDARPEQGD 9612
Score = 51.0 bits (105), Expect(2) = 7e-09
Identities = 21/24 (87%), Positives = 21/24 (87%)
Frame = -2 / +2
Query: 458 GLPEYHVRLRRRALEHVRLRHHEQ 387
GLPEY VRLRRRALE VRL HHEQ
Sbjct: 9689 GLPEYDVRLRRRALEDVRLGHHEQ 9760
Score = 35.4 bits (71), Expect(2) = 7e-09
Identities = 19/36 (52%), Positives = 20/36 (55%)
Frame = -2 / +2
Query: 728 GGELHDGADDVAVVRLEXXXXXXXXXXXXXXDEVDV 621
G ELHDGA +VAVVRLE DEVDV
Sbjct: 9428 GRELHDGAHNVAVVRLERLDGLGPRHAGLRHDEVDV 9535
>LOC_Os05g31000:12005.t02698:unspliced-genomic nascent polypeptide-associated complex alpha subunit-like protein,|
putative, expressed
Length = 1949
Score = 74.8 bits (157), Expect(3) = 9e-37
Identities = 33/43 (76%), Positives = 40/43 (93%)
Frame = +3 / +2
Query: 603 TGIEARDIDLVMTQASVSRAKAVKALKAHDGDIVSAIMELTA* 731
TG+E +DI+LVMTQA+VSR+KAVKALKA +GDIV+AIMELT *
Sbjct: 1559 TGVEPKDIELVMTQATVSRSKAVKALKAANGDIVTAIMELTT* 1687
Score = 71.6 bits (150), Expect(3) = 9e-37
Identities = 31/51 (60%), Positives = 35/51 (68%)
Frame = +3 / +2
Query: 384 ILFVVSKPDVFKSPTSETYVIFGEAKIEDXXXXXXXXXXXXFRMQDLSKAM 536
ILFV+SKPDVFKSPTS+TYVIFGEAKIED F+ DLS +
Sbjct: 1352 ILFVISKPDVFKSPTSDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSSML 1504
Score = 46.0 bits (94), Expect(3) = 9e-37
Identities = 16/24 (66%), Positives = 23/24 (95%)
Frame = +3 / +3
Query: 315 AMMKLGMKPVTGVSRITIKRAKNI 386
AM+KLGMK +TGVSR+T+K++KN+
Sbjct: 1191 AMVKLGMKSITGVSRVTVKKSKNV 1262
Score = 78.5 bits (165), Expect(3) = 6e-25
Identities = 35/49 (71%), Positives = 38/49 (77%)
Frame = -3 / -3
Query: 529 LLRSCILNCCAACACSCELRSSILASPNITYVSDVGLLNTSGFDTTNRM 383
LLRS LNC AA CSCELRSSILASP +T VSDVGLL TSG + T R+
Sbjct: 1497 LLRSGALNCSAAWVCSCELRSSILASPKMT*VSDVGLLKTSGLEMTKRI 1351
Score = 52.8 bits (109), Expect(3) = 6e-25
Identities = 23/35 (65%), Positives = 24/35 (68%)
Frame = -3 / -2
Query: 382 FLALLMVILLTPVTGFIPSFIMALRLFFSLRLCFD 278
FL L V LTPV F+PSF MA LFFSLRLC D
Sbjct: 1258 FLLFLTVTRLTPVIDFMPSFTMAFLLFFSLRLCLD 1154
Score = 27.6 bits (54), Expect(3) = 6e-25
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2 / -2
Query: 731 LGGELHDGADDVAVVRLE 678
L E HDG DDVA+ LE
Sbjct: 1687 LSCEFHDGCDDVAIGSLE 1634
Score = 37.7 bits (76), Expect = 0.12
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +2 / +1
Query: 386 PVRGVEAGRVQEPDVGDVRDIRGGQDRGPELXXXXXXXXXVQDAGPEQ 529
P ++ G +QEP + + GQDRGPEL VQ AG EQ
Sbjct: 1354 PFCHLQTGCLQEPYIRHLCHFWRGQDRGPELAAADPGCRAVQGAGSEQ 1497
>LOC_Os01g50360:12001.t04471:unspliced-genomic NAC domain containing protein, expressed|
Length = 2528
Score = 90.9 bits (192), Expect(2) = 3e-33
Identities = 38/43 (88%), Positives = 39/43 (90%)
Frame = -3 / -2
Query: 535 IALLRSCILNCCAACACSCELRSSILASPNITYVSDVGLLNTS 407
I LLRSCILNCCAACACS ELRSSILASPN+TY SDVGLL TS
Sbjct: 2215 ITLLRSCILNCCAACACSWELRSSILASPNMTYDSDVGLLKTS 2087
Score = 71.6 bits (150), Expect(2) = 3e-33
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = -3 / -1
Query: 382 FLALLMVILLTPVTGFIPSFIMALRLFFSLRLCFD 278
FLAL MVILLTPVTGFIPSFIMALRLFFSL LC +
Sbjct: 1973 FLALSMVILLTPVTGFIPSFIMALRLFFSLLLCLE 1869
Score = 65.2 bits (136), Expect(3) = 1e-25
Identities = 29/43 (67%), Positives = 30/43 (69%)
Frame = +3 / +3
Query: 408 DVFKSPTSETYVIFGEAKIEDXXXXXXXXXXXXFRMQDLSKAM 536
DVFKSPTSE+YVIFGEAKIED FRMQDLSK M
Sbjct: 2088 DVFKSPTSESYVIFGEAKIEDLSSQLQAQAAQQFRMQDLSKVM 2216
Score = 53.8 bits (111), Expect(3) = 1e-25
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +3 / +1
Query: 315 AMMKLGMKPVTGVSRITIKRAKNI 386
AMMKLGMKPVTGVSRITI+RAKN+
Sbjct: 1906 AMMKLGMKPVTGVSRITIERAKNV 1977
Score = 35.9 bits (72), Expect(3) = 1e-25
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3 / +3
Query: 603 TGIEARDIDLVMTQASVSRAKAVKALKAH 689
TGIE RDID+VMTQAS S + + H
Sbjct: 2274 TGIEPRDIDVVMTQASSSSPPPYRRHRRH 2360
Score = 63.4 bits (132), Expect(2) = 4e-19
Identities = 28/42 (66%), Positives = 29/42 (69%)
Frame = +2 / +2
Query: 410 RVQEPDVGDVRDIRGGQDRGPELXXXXXXXXXVQDAGPEQGD 535
R+QEPDVG VR IRGGQDRGPEL VQDA EQGD
Sbjct: 2090 RLQEPDVGVVRHIRGGQDRGPELPAAGAGSAAVQDARSEQGD 2215
Score = 51.5 bits (106), Expect(2) = 4e-19
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +2 / +3
Query: 311 QGHDEARDEARHRRQQDYHQESQE 382
QGHDEAR+E RH QQDYH+ESQE
Sbjct: 1902 QGHDEARNETRHGSQQDYHRESQE 1973
Score = 38.2 bits (77), Expect(3) = 1e-05
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -2 / -1
Query: 458 GLPEYHVRLRRRALEHVRLRHHEQDVL 378
GLPEY VRLRRRALE V H + L
Sbjct: 2138 GLPEYDVRLRRRALEDVMRFGHHEQYL 2058
Score = 30.9 bits (61), Expect(3) = 1e-05
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -2 / -3
Query: 383 VLGSLDGNPADAGD 342
+LGSLDGNPAD+ D
Sbjct: 1974 ILGSLDGNPADSRD 1933
Score = 24.0 bits (46), Expect(3) = 1e-05
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -3 / -2
Query: 91 VVTGVCSLTM 62
V TGVCSLTM
Sbjct: 1468 VATGVCSLTM 1439
>LOC_Os01g71230:12001.t06419:unspliced-genomic nascent polypeptide-associated complex alpha subunit-like protein 3,|
putative, expressed
Length = 2759
Score = 71.2 bits (149), Expect(2) = 1e-26
Identities = 30/41 (73%), Positives = 39/41 (95%)
Frame = +3 / +1
Query: 603 TGIEARDIDLVMTQASVSRAKAVKALKAHDGDIVSAIMELT 725
+G+E +DI+LVMTQA+VSR++AVKALKA +GDIV+AIMELT
Sbjct: 2350 SGVEPKDIELVMTQATVSRSRAVKALKAANGDIVTAIMELT 2472
Score = 69.3 bits (145), Expect(2) = 1e-26
Identities = 30/51 (58%), Positives = 34/51 (66%)
Frame = +3 / +1
Query: 384 ILFVVSKPDVFKSPTSETYVIFGEAKIEDXXXXXXXXXXXXFRMQDLSKAM 536
ILFV+SKPDVFKSP S+TYVIFGEAKIED F+ DLS +
Sbjct: 2146 ILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQAAEQFKAPDLSNVI 2298
Score = 75.3 bits (158), Expect(2) = 4e-22
Identities = 33/52 (63%), Positives = 39/52 (75%)
Frame = -3 / -1
Query: 535 IALLRSCILNCCAACACSCELRSSILASPNITYVSDVGLLNTSGFDTTNRMF 380
+ LLRS LNC AA CSCELRSSI ASP +T VS+ GLL TSG + TNR++
Sbjct: 2297 MTLLRSGALNCSAA*VCSCELRSSIFASPKMT*VSEFGLLKTSGLEMTNRIW 2142
Score = 49.6 bits (102), Expect(2) = 4e-22
Identities = 22/35 (62%), Positives = 24/35 (68%)
Frame = -3 / -2
Query: 382 FLALLMVILLTPVTGFIPSFIMALRLFFSLRLCFD 278
FL L+V LTPV F+PSF MA LFFSL LC D
Sbjct: 2047 FLLFLIVTRLTPVMVFMPSFCMAFLLFFSLLLCLD 1943
Score = 49.2 bits (101), Expect = 4e-05
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +3 / +3
Query: 315 AMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYV 443
AM KLGMK +TGVSR+TIK++KN+ +++ +F + Y+
Sbjct: 1980 AMQKLGMKTITGVSRVTIKKSKNVSCLITVMPLFLVGSQNCYI 2108
Score = 31.8 bits (63), Expect = 7.5
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2 / +3
Query: 413 VQEPDVGDVRDIRGGQDRGPELXXXXXXXXXVQDAGPE 526
+QEP + +R +R G+DRG EL VQ PE
Sbjct: 2175 LQEPKLRHLRHLR*GEDRGSELAAADSSCRAVQGT*PE 2288
>LOC_Os07g22450:12007.t01949:unspliced-genomic nascent polypeptide-associated complex alpha subunit-like protein,|
putative
Length = 578
Score = 74.4 bits (156), Expect(2) = 7e-13
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = -3 / -2
Query: 382 FLALLMVILLTPVTGFIPSFIMALRLFFSLRLCFD 278
FLALLMVILLTPVTGFIPSFIMALRLFFSL LC +
Sbjct: 529 FLALLMVILLTPVTGFIPSFIMALRLFFSLLLCLE 425
Score = 21.7 bits (41), Expect(2) = 7e-13
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3 / -1
Query: 91 VVTGVCSLT 65
V TGVCSLT
Sbjct: 29 VATGVCSLT 3
Score = 55.6 bits (115), Expect(2) = 9e-08
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +3 / +3
Query: 315 AMMKLGMKPVTGVSRITIKRAKNI 386
AMMKLGMKPVTGVSRITIKRAKN+
Sbjct: 462 AMMKLGMKPVTGVSRITIKRAKNV 533
Score = 23.1 bits (44), Expect(2) = 9e-08
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / +1
Query: 63 MVSEQTPVTT 92
MVSEQTPV T
Sbjct: 1 MVSEQTPVAT 30
Score = 53.3 bits (110), Expect = 2e-06
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = +2 / +2
Query: 311 QGHDEARDEARHRRQQDYHQESQE 382
QGHDEAR+E RH QQDYHQESQE
Sbjct: 458 QGHDEARNETRHGSQQDYHQESQE 529
>LOC_Os01g39110:12001.t03444:unspliced-genomic zinc finger protein, putative, expressed|
Length = 2648
Score = 24.4 bits (47), Expect(2) = 9.3
Identities = 7/19 (36%), Positives = 9/19 (47%)
Frame = -3 / -2
Query: 541 GLIALLRSCILNCCAACAC 485
G A + C +CC C C
Sbjct: 1963 GFTAYPQFCCTSCCRCCCC 1907
Score = 24.0 bits (46), Expect(2) = 9.3
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = -3 / -2
Query: 502 CAACACSCELRSS 464
C C CSC SS
Sbjct: 1867 CCCCCCSCSAASS 1829
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 159,989,144
Number of extensions: 1639251
Number of successful extensions: 12484
Number of sequences better than 10.0: 21
Length of query: 309
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 260
Effective length of database: 52,856,264
Effective search space: 13742628640
Effective search space used: 13742628640
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)