Clone Name	FLbaf74h17
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome	52	0.007
2	gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B...	46	0.43
3	emb|AJ235270.1|RPXX01 Rickettsia prowazekii strain Madrid E, com...	46	0.43
4	gb|DQ843659.1| Human metapneumovirus strain BJ1887, complete genome	44	1.7
5	emb|AM285308.1| Spiroplasma citri GII3-3X chromosome, contig Con...	44	1.7
6	gb|AC164878.2| Mus musculus BAC clone RP23-364G24 from chromosom...	44	1.7
7	gb|AC102062.9| Mus musculus chromosome 19, clone RP23-217B9, com...	44	1.7
8	gb|AC136453.3| Mus musculus chromosome 19 clone RP24-327L21, com...	44	1.7
9	gb|AC124357.3| Mus musculus BAC clone RP24-490K11 from chromosom...	44	1.7
10	gb|AC006155.2| Homo sapiens BAC clone RP11-263N12 from 7, comple...	44	1.7
11	gb|AC005817.8| Mus musculus strain 129/Sv clone ct7-581i11 map 1...	44	1.7
12	gb|AY038255.1| HIV-1 clone MNT2-19 from USA nonfunctional gag pr...	44	1.7
13	gb|AY038254.1| HIV-1 clone MNT2-18 from USA nonfunctional gag pr...	44	1.7
14	gb|AY038253.1| HIV-1 clone MNT2-17 from USA nonfunctional gag pr...	44	1.7
15	gb|AY038252.1| HIV-1 clone MNT2-16 from USA nonfunctional gag pr...	44	1.7
16	gb|AY038251.1| HIV-1 clone MNT2-15 from USA nonfunctional gag pr...	44	1.7
17	emb|AL049796.28|HSJ561L24 Human DNA sequence from clone RP4-561L...	44	1.7
18	gb|AC154198.3| Mus musculus BAC clone RP24-393P24 from chromosom...	44	1.7
19	gb|AC146074.4| Pan troglodytes BAC clone RP43-15D8 from chromoso...	44	1.7
20	gb|AC079043.27| Mus musculus strain C57BL/6J chromosome 16 clone...	44	1.7
21	gb|AC161886.4| Pan troglodytes BAC clone CH251-708N9 from chromo...	44	1.7
22	emb|Z81464.1|CEC08E8 Caenorhabditis elegans Cosmid C08E8, comple...	44	1.7
23	gb|U43710.1|SMU43710 Spiroplasma melliferum recA gene, partial cds	44	1.7
24	gb|U31909.1|SCU31909 Spiroplasma citri RecA-like protein (recA) ...	44	1.7
25	gb|AC087064.27| Mus musculus strain C57BL/6J chromosome 16 clone...	44	1.7
26	emb|AL840635.6| Mouse DNA sequence from clone RP23-418D21 on chr...	44	1.7
27	emb|AL929142.6| Mouse DNA sequence from clone RP23-340A13 on chr...	44	1.7
28	gb|AC119870.17| Mus musculus chromosome 3, clone RP24-261K17, co...	42	6.6
29	gb|AC126693.3| Mus musculus BAC clone RP23-247E23 from chromosom...	42	6.6
30	gb|AC120122.10| Mus musculus chromosome 10, clone RP23-75O24, co...	42	6.6
31	gb|AC090445.3| Canis familiaris clone RP81-55A4, complete sequence	42	6.6
32	gb|AC110790.3| Homo sapiens BAC clone RP11-548L20 from 4, comple...	42	6.6
33	emb|AL359677.19| Human DNA sequence from clone RP11-523E20 on ch...	42	6.6
34	gb|AC154825.2| Mus musculus BAC clone RP24-540E16 from chromosom...	42	6.6
35	gb|AC155271.1| Mus musculus BAC clone RP23-204F12 from 16, compl...	42	6.6
36	ref|XM_726136.1| Plasmodium yoelii yoelii str. 17XNL hypothetica...	42	6.6
37	emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome	42	6.6
38	emb|AL935135.4| Mouse DNA sequence from clone RP23-16C1 on chrom...	42	6.6
39	emb|AL672100.7| Mouse DNA sequence from clone RP23-125A1 on chro...	42	6.6
40	gb|AY839823.1|AY839821S3 Bos taurus peroxisome proliferator-acti...	42	6.6
41	gb|L12696.1|CHKEN2A01 Gallus gallus engrailed protein (En-2) gen...	42	6.6

---

>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470
 Score = 52.0 bits (26), Expect = 0.007
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                             
Query: 577     ggcttggttttcctattcaatgggagaaat 606
               ||||||||||| ||||||||||||||||||
Sbjct: 2579240 ggcttggttttactattcaatgggagaaat 2579269

---

>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness
             locus region
          Length = 160897

 Score = 46.1 bits (23), Expect = 0.43
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 1416  ttactgtagcaaaagctgaggatgtcacaat 1446
             |||||||||||||||  ||||||||||||||
Sbjct: 55970 ttactgtagcaaaagtcgaggatgtcacaat 56000

---

>emb|AJ235270.1|RPXX01 Rickettsia prowazekii strain Madrid E, complete genome; segment 1/4
          Length = 282610

 Score = 46.1 bits (23), Expect = 0.43
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 1039   ttagtaatgatatagataaaata 1061
              |||||||||||||||||||||||
Sbjct: 185077 ttagtaatgatatagataaaata 185055

---

>gb|DQ843659.1| Human metapneumovirus strain BJ1887, complete genome
          Length = 13327

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1045 atgatatagataaaatagaaga 1066
            ||||||||||||||||||||||
Sbjct: 9199 atgatatagataaaatagaaga 9220

---

>emb|AM285308.1| Spiroplasma citri GII3-3X chromosome, contig Contig07
          Length = 34700

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 878   atgtaatgatagggttggtatgcctgatga 907
             ||||||||||||||||| | ||||||||||
Sbjct: 12359 atgtaatgatagggttgttttgcctgatga 12330

---

>gb|AC164878.2| Mus musculus BAC clone RP23-364G24 from chromosome 13, complete
             sequence
          Length = 181893

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 1051  tagataaaatagaagaagaacatgga 1076
             |||| |||||||||||||||||||||
Sbjct: 14800 tagacaaaatagaagaagaacatgga 14775

---

>gb|AC102062.9| Mus musculus chromosome 19, clone RP23-217B9, complete sequence
          Length = 253774

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 1019  ctctgtggactctgctttagtt 1040
             ||||||||||||||||||||||
Sbjct: 56183 ctctgtggactctgctttagtt 56204

---

>gb|AC136453.3| Mus musculus chromosome 19 clone RP24-327L21, complete sequence
          Length = 201474

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 1019   ctctgtggactctgctttagtt 1040
              ||||||||||||||||||||||
Sbjct: 169719 ctctgtggactctgctttagtt 169740

---

>gb|AC124357.3| Mus musculus BAC clone RP24-490K11 from chromosome 19, complete sequence
          Length = 154460

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 1019   ctctgtggactctgctttagtt 1040
              ||||||||||||||||||||||
Sbjct: 151513 ctctgtggactctgctttagtt 151492

---

>gb|AC006155.2| Homo sapiens BAC clone RP11-263N12 from 7, complete sequence
          Length = 119996

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 1352  tcaaatcactgctttggataag 1373
             ||||||||||||||||||||||
Sbjct: 47517 tcaaatcactgctttggataag 47538

---

>gb|AC005817.8| Mus musculus strain 129/Sv clone ct7-581i11 map 16, complete sequence
          Length = 188708

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 1595   tgtattttgttgtttgcaaactgtctattt 1624
              |||||||||||||| ||||||||| |||||
Sbjct: 103053 tgtattttgttgttagcaaactgtatattt 103082

---

>gb|AY038255.1| HIV-1 clone MNT2-19 from USA nonfunctional gag protein (gag) gene,
            partial sequence
          Length = 393

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1051 tagataaaatagaagaagaaca 1072
            ||||||||||||||||||||||
Sbjct: 302  tagataaaatagaagaagaaca 323

---

>gb|AY038254.1| HIV-1 clone MNT2-18 from USA nonfunctional gag protein (gag) gene,
            partial sequence
          Length = 393

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1051 tagataaaatagaagaagaaca 1072
            ||||||||||||||||||||||
Sbjct: 302  tagataaaatagaagaagaaca 323

---

>gb|AY038253.1| HIV-1 clone MNT2-17 from USA nonfunctional gag protein (gag) gene,
            partial sequence
          Length = 393

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1051 tagataaaatagaagaagaaca 1072
            ||||||||||||||||||||||
Sbjct: 302  tagataaaatagaagaagaaca 323

---

>gb|AY038252.1| HIV-1 clone MNT2-16 from USA nonfunctional gag protein (gag) gene,
            partial sequence
          Length = 393

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1051 tagataaaatagaagaagaaca 1072
            ||||||||||||||||||||||
Sbjct: 302  tagataaaatagaagaagaaca 323

---

>gb|AY038251.1| HIV-1 clone MNT2-15 from USA nonfunctional gag protein (gag) gene,
            partial sequence
          Length = 393

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1051 tagataaaatagaagaagaaca 1072
            ||||||||||||||||||||||
Sbjct: 302  tagataaaatagaagaagaaca 323

---

>emb|AL049796.28|HSJ561L24 Human DNA sequence from clone RP4-561L24 on chromosome 1p22-31.1
             Contains the 5' end of a novel gene, the 5' end of a
             variant of the BCAR3 gene for breast cancer anti-estrogen
             resistance 3, the gene for acidic 82 kDa protein mRNA
             (HSU15552), the 3' end of the GCLM gene for
             glutamate-cysteine ligase modifier subunit and a CpG
             island, complete sequence
          Length = 125823

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 521   aaacatcaaaaagatggattgcaatg 546
             |||||||| |||||||||||||||||
Sbjct: 67588 aaacatcacaaagatggattgcaatg 67613

---

>gb|AC154198.3| Mus musculus BAC clone RP24-393P24 from chromosome 13, complete sequence
          Length = 142792

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 1051   tagataaaatagaagaagaacatgga 1076
              |||| |||||||||||||||||||||
Sbjct: 131246 tagacaaaatagaagaagaacatgga 131221

---

>gb|AC146074.4| Pan troglodytes BAC clone RP43-15D8 from chromosome 7, complete sequence
          Length = 196799

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 1352   tcaaatcactgctttggataag 1373
              ||||||||||||||||||||||
Sbjct: 179953 tcaaatcactgctttggataag 179974

---

>gb|AC079043.27| Mus musculus strain C57BL/6J chromosome 16 clone rp23-397e16, complete
              sequence
          Length = 214471

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 1595   tgtattttgttgtttgcaaactgtctattt 1624
              |||||||||||||| ||||||||| |||||
Sbjct: 103083 tgtattttgttgttagcaaactgtatattt 103112

---

>gb|AC161886.4| Pan troglodytes BAC clone CH251-708N9 from chromosome 7, complete
              sequence
          Length = 205419

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 1352   tcaaatcactgctttggataag 1373
              ||||||||||||||||||||||
Sbjct: 186815 tcaaatcactgctttggataag 186836

---

>emb|Z81464.1|CEC08E8 Caenorhabditis elegans Cosmid C08E8, complete sequence
          Length = 43994

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 1685  acacagaaaccaccaaaattat 1706
             ||||||||||||||||||||||
Sbjct: 36526 acacagaaaccaccaaaattat 36547

---

>gb|U43710.1|SMU43710 Spiroplasma melliferum recA gene, partial cds
          Length = 1793

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 878 atgtaatgatagggttggtatgcctgatga 907
           ||||||||||||||||| | ||||||||||
Sbjct: 391 atgtaatgatagggttgttttgcctgatga 362

---

>gb|U31909.1|SCU31909 Spiroplasma citri RecA-like protein (recA) gene, complete cds
          Length = 3938

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 878 atgtaatgatagggttggtatgcctgatga 907
           ||||||||||||||||| | ||||||||||
Sbjct: 628 atgtaatgatagggttgttttgcctgatga 599

---

>gb|AC087064.27| Mus musculus strain C57BL/6J chromosome 16 clone rp23-428i4, complete
              sequence
          Length = 211848

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 1595   tgtattttgttgtttgcaaactgtctattt 1624
              |||||||||||||| ||||||||| |||||
Sbjct: 131677 tgtattttgttgttagcaaactgtatattt 131648

---

>emb|AL840635.6| Mouse DNA sequence from clone RP23-418D21 on chromosome 2, complete
             sequence
          Length = 201328

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 1019  ctctgtggactctgctttagtt 1040
             ||||||||||||||||||||||
Sbjct: 56543 ctctgtggactctgctttagtt 56564

---

>emb|AL929142.6| Mouse DNA sequence from clone RP23-340A13 on chromosome 2, complete
              sequence
          Length = 207823

 Score = 44.1 bits (22), Expect = 1.7
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 1668   taatagacagaaaccagacacagaaa 1693
              ||||||||||||||||||| ||||||
Sbjct: 168812 taatagacagaaaccagactcagaaa 168837

---

>gb|AC119870.17| Mus musculus chromosome 3, clone RP24-261K17, complete sequence
          Length = 144502

 Score = 42.1 bits (21), Expect = 6.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1684  gacacagaaaccaccaaaatt 1704
             |||||||||||||||||||||
Sbjct: 37436 gacacagaaaccaccaaaatt 37456

---

>gb|AC126693.3| Mus musculus BAC clone RP23-247E23 from chromosome 16, complete
             sequence
          Length = 199505

 Score = 42.1 bits (21), Expect = 6.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 1655  tttatgctatgtgtaatagacagaa 1679
             |||||||||||||||||| ||||||
Sbjct: 15695 tttatgctatgtgtaatacacagaa 15671

---

>gb|AC120122.10| Mus musculus chromosome 10, clone RP23-75O24, complete sequence
          Length = 144972

 Score = 42.1 bits (21), Expect = 6.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 988   cagatgcaagtgggaagagga 1008
             |||||||||||||||||||||
Sbjct: 49440 cagatgcaagtgggaagagga 49420

---

>gb|AC090445.3| Canis familiaris clone RP81-55A4, complete sequence
          Length = 163762

 Score = 42.1 bits (21), Expect = 6.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 916   aagatcctggacctggagaca 936
             |||||||||||||||||||||
Sbjct: 58694 aagatcctggacctggagaca 58714

---

>gb|AC110790.3| Homo sapiens BAC clone RP11-548L20 from 4, complete sequence
          Length = 123196

 Score = 42.1 bits (21), Expect = 6.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1605  tgtttgcaaactgtctatttg 1625
             |||||||||||||||||||||
Sbjct: 27787 tgtttgcaaactgtctatttg 27807

---

>emb|AL359677.19| Human DNA sequence from clone RP11-523E20 on chromosome 10, complete
             sequence
          Length = 118452

 Score = 42.1 bits (21), Expect = 6.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 544   atggatttccttctgaggttt 564
             |||||||||||||||||||||
Sbjct: 97997 atggatttccttctgaggttt 97977

---

>gb|AC154825.2| Mus musculus BAC clone RP24-540E16 from chromosome 16, complete
             sequence
          Length = 202988

 Score = 42.1 bits (21), Expect = 6.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 1655  tttatgctatgtgtaatagacagaa 1679
             |||||||||||||||||| ||||||
Sbjct: 18204 tttatgctatgtgtaatacacagaa 18228

---

>gb|AC155271.1| Mus musculus BAC clone RP23-204F12 from 16, complete sequence
          Length = 204679

 Score = 42.1 bits (21), Expect = 6.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 1655  tttatgctatgtgtaatagacagaa 1679
             |||||||||||||||||| ||||||
Sbjct: 42761 tttatgctatgtgtaatacacagaa 42737

---

>ref|XM_726136.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03237)
            partial mRNA
          Length = 7494

 Score = 42.1 bits (21), Expect = 6.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1039 ttagtaatgatatagataaaataga 1063
            |||||||||||||| ||||||||||
Sbjct: 713  ttagtaatgatatatataaaataga 737

---

>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 6.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 390     gggtacatcgacccgattttt 410
               |||||||||||||||||||||
Sbjct: 2056433 gggtacatcgacccgattttt 2056453

---

>emb|AL935135.4| Mouse DNA sequence from clone RP23-16C1 on chromosome 2, complete
            sequence
          Length = 3994

 Score = 42.1 bits (21), Expect = 6.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1525 ttaaggaagccatggctcttg 1545
            |||||||||||||||||||||
Sbjct: 2856 ttaaggaagccatggctcttg 2876

---

>emb|AL672100.7| Mouse DNA sequence from clone RP23-125A1 on chromosome 2, complete
            sequence
          Length = 196421

 Score = 42.1 bits (21), Expect = 6.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1525 ttaaggaagccatggctcttg 1545
            |||||||||||||||||||||
Sbjct: 862  ttaaggaagccatggctcttg 882

---

>gb|AY839823.1|AY839821S3 Bos taurus peroxisome proliferator-activated receptor gamma
            coactivator 1 alpha (PPARGC1A) gene, intron 5
          Length = 3884

 Score = 42.1 bits (21), Expect = 6.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 653  agaaaaatcaactgaatattc 673
            |||||||||||||||||||||
Sbjct: 3496 agaaaaatcaactgaatattc 3516

---

>gb|L12696.1|CHKEN2A01 Gallus gallus engrailed protein (En-2) gene, 5' end
          Length = 1100

 Score = 42.1 bits (21), Expect = 6.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 286 cagcggctcctgcccgccccg 306
           |||||||||||||||||||||
Sbjct: 533 cagcggctcctgcccgccccg 513


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 319,186,146
Number of extensions: 17400427
Number of successful extensions: 347727
Number of sequences better than 10.0: 41
Number of HSP's gapped: 347727
Number of HSP's successfully gapped: 41
Length of query: 1742
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1719
Effective length of database: 18,503,978,556
Effective search space: 31808339137764
Effective search space used: 31808339137764
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)

---