ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf80e14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1AK120405:Os02g0522300 41 0.002
2AK068634:Os02g0522300 41 0.002
3AK068116:Os02g0522300 41 0.002
4Os05g0263200:Os05g0263200 40 0.003
5AK106612:Os09g0491900 40 0.003
6AK109764:Os04g0117300 31 2.6
7Os07g0430200:Os07g0430200 31 2.6 
>AK120405:Os02g0522300 |
          Length = 136
 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/52 (46%), Positives = 33/52 (63%)
 Frame = +1

Query: 166 PVTRARARQLNYQVLSFIGNTSNVHEHMMLPKLDTLVVLMNEGPSMDRKDIR 321
           P+TRARARQLNYQV SF+ + S+    +      TLV+L N+G   + + IR
Sbjct: 80  PITRARARQLNYQVSSFLNSCSSC---LYPGDACTLVLLRNDGEDPNGERIR 128
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>AK068634:Os02g0522300 |
          Length = 136

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/52 (46%), Positives = 33/52 (63%)
 Frame = +1

Query: 166 PVTRARARQLNYQVLSFIGNTSNVHEHMMLPKLDTLVVLMNEGPSMDRKDIR 321
           P+TRARARQLNYQV SF+ + S+    +      TLV+L N+G   + + IR
Sbjct: 80  PITRARARQLNYQVSSFLNSCSSC---LYPGDACTLVLLRNDGEDPNGERIR 128
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>AK068116:Os02g0522300 |
          Length = 136

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/52 (46%), Positives = 33/52 (63%)
 Frame = +1

Query: 166 PVTRARARQLNYQVLSFIGNTSNVHEHMMLPKLDTLVVLMNEGPSMDRKDIR 321
           P+TRARARQLNYQV SF+ + S+    +      TLV+L N+G   + + IR
Sbjct: 80  PITRARARQLNYQVSSFLNSCSSC---LYPGDACTLVLLRNDGEDPNGERIR 128
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>Os05g0263200:Os05g0263200 |
          Length = 1820

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 21/43 (48%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
 Frame = +1

Query: 163  GPVTRARARQLNYQVLSFIGNTS-NVHEHMMLPKLDTLVVLMN 288
            GP+TR+RA++L  QV SF+ + + +  E+++LPK  TLVVL N
Sbjct: 1589 GPLTRSRAKKLQVQVNSFLTDFNFSTSENVILPKCSTLVVLRN 1631
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>AK106612:Os09g0491900 |
          Length = 681

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 21/43 (48%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
 Frame = +1

Query: 163 GPVTRARARQLNYQVLSFIGNTS-NVHEHMMLPKLDTLVVLMN 288
           GP+TR+RA++L  QV SF+ + + +  E+++LPK  TLVVL N
Sbjct: 557 GPLTRSRAKKLQVQVNSFLTDFNFSTSENVILPKCSTLVVLRN 599
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>AK109764:Os04g0117300 |
          Length = 674

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 25/69 (36%), Positives = 30/69 (43%)
 Frame = +3

Query: 903  GVGLAIAKARRPHTFLVGSSKSTPSKRYPRSHRKTGTTSPLSSGIRFSGCSVRFYQFSSL 1082
            G G A++  R  H      +KS     +P SHR  GT+         SG   RF QF SL
Sbjct: 223  GAGAAVSTERLGHR-----AKSESGVIFPSSHRGAGTSR------HVSGMIGRFSQFLSL 271

Query: 1083 DRICSSYLS 1109
            D    S LS
Sbjct: 272  DAGGESLLS 280
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>Os07g0430200:Os07g0430200 |
          Length = 338

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +1

Query: 163 GPVTRARARQLNYQVLSF 216
           GP+TRARARQLN + L+F
Sbjct: 311 GPITRARARQLNLEGLAF 328


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 37,069,084
Number of extensions: 846845
Number of successful extensions: 2214
Number of sequences better than 10.0: 7
Number of HSP's gapped: 2195
Number of HSP's successfully gapped: 7
Length of query: 503
Length of database: 15,399,855
Length adjustment: 105
Effective length of query: 398
Effective length of database: 11,195,550
Effective search space: 4455828900
Effective search space used: 4455828900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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