ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf80b16 |
|---|---|
| Clone Library Name | barley_pub |
>P90495:MIR1_HHV8 E3 ubiquitin-protein ligase MIR1 - Human herpesvirus 8 (HHV-8)| (Kaposi's sarcoma-associated herpesvirus) Length = 333 Score = 37.4 bits (85), Expect = 0.19 Identities = 14/31 (45%), Positives = 15/31 (48%) Frame = +1 Query: 793 CRCKGELALAHRRCALRWFGIKGNANCDVCG 885 C C GEL HR C W I N C +CG Sbjct: 24 CGCTGELENVHRSCLSTWLTISRNTACQICG 54
>Q3TZ87:MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 - Mus musculus (Mouse)| Length = 348 Score = 37.4 bits (85), Expect = 0.19 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = +1 Query: 793 CRCKGELALAHRRCALRWFGIKGNANCDVC 882 CRC G + H+ C +RW +G+ +C++C Sbjct: 126 CRCDGSVRCTHQPCLIRWISERGSWSCELC 155
>Q86YJ5:MARH9_HUMAN E3 ubiquitin-protein ligase MARCH9 - Homo sapiens (Human)| Length = 346 Score = 37.4 bits (85), Expect = 0.19 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = +1 Query: 793 CRCKGELALAHRRCALRWFGIKGNANCDVC 882 CRC G + H+ C +RW +G+ +C++C Sbjct: 126 CRCDGSVRCTHQPCLIRWISERGSWSCELC 155
>Q0P496:MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 precursor - Danio rerio| (Zebrafish) (Brachydanio rerio) Length = 421 Score = 36.2 bits (82), Expect = 0.42 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = +1 Query: 793 CRCKGELALAHRRCALRWFGIKGNANCDVC 882 CRC G + H C ++W +G+ +C++C Sbjct: 159 CRCSGSVRCTHEPCLIKWISERGSWSCELC 188
>Q80TE3:MARH4_MOUSE E3 ubiquitin-protein ligase MARCH4 precursor - Mus musculus (Mouse)| Length = 409 Score = 34.7 bits (78), Expect = 1.2 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = +1 Query: 793 CRCKGELALAHRRCALRWFGIKGNANCDVC 882 CRC G + H+ C ++W +G +C++C Sbjct: 178 CRCDGSVKCTHQPCLIKWISERGCWSCELC 207
>Q9P2E8:MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 precursor - Homo sapiens (Human)| Length = 410 Score = 34.7 bits (78), Expect = 1.2 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = +1 Query: 793 CRCKGELALAHRRCALRWFGIKGNANCDVC 882 CRC G + H+ C ++W +G +C++C Sbjct: 179 CRCDGSVKCTHQPCLIKWISERGCWSCELC 208
>P90489:MIR2_HHV8 E3 ubiquitin-protein ligase MIR2 - Human herpesvirus 8 (HHV-8)| (Kaposi's sarcoma-associated herpesvirus) Length = 256 Score = 33.5 bits (75), Expect = 2.7 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = +1 Query: 793 CRCKGELALAHRRCALRWFGIKGNANCDVC 882 C C GEL + H +C W + N C +C Sbjct: 30 CACTGELDVVHPQCLSTWLTVSRNTACQMC 59
>O41933:MIR1_MHV68 E3 ubiquitin-protein ligase MIR1 - Murid herpesvirus 4 (MuHV-4)| (Murine gammaherpesvirus 68) Length = 201 Score = 33.5 bits (75), Expect = 2.7 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = +1 Query: 781 LKLECRCKGELALAHRRCALRWFGIKGNANCDVCG 885 LK C CKG A++H+ C W C +CG Sbjct: 18 LKRFCGCKGSCAVSHQDCLRGWLETSRRQTCALCG 52
>Q6NZQ8:MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 - Mus musculus (Mouse)| Length = 289 Score = 33.1 bits (74), Expect = 3.5 Identities = 11/35 (31%), Positives = 17/35 (48%) Frame = +1 Query: 793 CRCKGELALAHRRCALRWFGIKGNANCDVCGHDVL 897 CRC G L H+ C +W C++C +D + Sbjct: 97 CRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDFI 131
>Q8TCQ1:MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 - Homo sapiens (Human)| Length = 289 Score = 33.1 bits (74), Expect = 3.5 Identities = 11/35 (31%), Positives = 17/35 (48%) Frame = +1 Query: 793 CRCKGELALAHRRCALRWFGIKGNANCDVCGHDVL 897 CRC G L H+ C +W C++C +D + Sbjct: 97 CRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDFI 131
>P31069:KCH_ECOLI Putative potassium channel protein - Escherichia coli| Length = 417 Score = 33.1 bits (74), Expect = 3.5 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = +1 Query: 1159 LGTFSALTTAGMVSSKRYVWAYSALQFLLVVLFTHLFYRYVKLQAVIAIILSTF 1320 LG F L + G++ + WA S + L+ +++T FY ++K I F Sbjct: 70 LGVFLVLNSIGLLFRAKLAWAISIILLLIALIYTLHFYPWLKFSIGFCIFTLVF 123
>P27426:VIE1_BHV4D Probable E3 ubiquitin-protein ligase IE1 - Bovine herpesvirus 4| (strain DN-599) (BoHV-4) (Movar virus) Length = 285 Score = 32.3 bits (72), Expect = 6.0 Identities = 10/30 (33%), Positives = 12/30 (40%) Frame = +1 Query: 793 CRCKGELALAHRRCALRWFGIKGNANCDVC 882 C C G+L H C W + G C C Sbjct: 147 CNCYGDLQYCHEECLKTWISMSGEKKCKFC 176
>Q32L65:MARH2_BOVIN E3 ubiquitin-protein ligase MARCH2 - Bos taurus (Bovine)| Length = 245 Score = 32.3 bits (72), Expect = 6.0 Identities = 10/30 (33%), Positives = 14/30 (46%) Frame = +1 Query: 793 CRCKGELALAHRRCALRWFGIKGNANCDVC 882 C C G L H+ C RW + C++C Sbjct: 80 CGCSGTLGAVHKSCLERWLSSSNTSYCELC 109
>Q20977:STATB_CAEEL Signal transducer and activator of transcription b - Caenorhabditis| elegans Length = 966 Score = 32.0 bits (71), Expect = 7.8 Identities = 9/36 (25%), Positives = 15/36 (41%) Frame = +1 Query: 793 CRCKGELALAHRRCALRWFGIKGNANCDVCGHDVLN 900 C C G + H C +W + C++C + N Sbjct: 66 CDCAGTMGDVHEECLTKWVNMSNKKTCEICKSEYTN 101
>Q0VD59:MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 - Bos taurus (Bovine)| Length = 289 Score = 32.0 bits (71), Expect = 7.8 Identities = 10/35 (28%), Positives = 17/35 (48%) Frame = +1 Query: 793 CRCKGELALAHRRCALRWFGIKGNANCDVCGHDVL 897 CRC G L H+ C +W C++C ++ + Sbjct: 95 CRCTGSLHFVHQTCLQQWIKSSDTRCCELCKYEFI 129 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 155,523,311 Number of extensions: 2371812 Number of successful extensions: 7815 Number of sequences better than 10.0: 15 Number of HSP's gapped: 7807 Number of HSP's successfully gapped: 15 Length of query: 548 Length of database: 100,686,439 Length adjustment: 118 Effective length of query: 430 Effective length of database: 68,319,629 Effective search space: 29377440470 Effective search space used: 29377440470 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
