>dbj|AK066896.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091L22, full
insert sequence
Length = 2881
Score = 422 bits (213), Expect = e-114
Identities = 441/517 (85%)
Strand = Plus / Plus
Query: 80 aagatgtcaggaggcttcttccgggggacgtcggccgaccaggataccagattctccaac 139
|||||||| || |||||||||||||||||||||||||| ||||| ||| | |||||||||
Sbjct: 104 aagatgtcgggcggcttcttccgggggacgtcggccgatcaggacacccgtttctccaac 163
Query: 140 aagcatgccaagttgctgaagacacagaagttcgcgtctgagcttgaccatcaggtggac 199
||||| || ||| |||| ||||| |||||||||||| | |||||||| || | |||||||
Sbjct: 164 aagcaggcgaagctgctcaagacgcagaagttcgcgcccgagcttgaacacctggtggac 223
Query: 200 atgtcaaaggtgaagatggacgtgatgaagccgtggattgccacacgggtcactgagctt 259
||| | |||||||||||||| |||||||| || ||||| || || || ||||| |||||
Sbjct: 224 atgactaaggtgaagatggatgtgatgaaaccatggatcgcgacccgtgtcaccgagctc 283
Query: 260 cttgggttcgaggacgaagtgcttatcaacttcatctacggcctgctcgatgcgaaggag 319
|| |||||||||||||||||||| |||||||||||||||||||| ||||| | |||||||
Sbjct: 284 ctagggttcgaggacgaagtgctcatcaacttcatctacggcctcctcgaagagaaggag 343
Query: 320 gtggacgggaagtacatacagatccagctgacggggttcatggagaagaatacaataaag 379
| ||| || ||| | |||||||| |||||||| || |||||||||||||| ||| | |||
Sbjct: 344 gcggatggaaagaagatacagatacagctgacaggattcatggagaagaacacagtgaag 403
Query: 380 ttcatgagggagctgtggagcctccttctaagtgcgcagcagaatgccagtggtgtgccc 439
||||||| |||||||||||||||||| || ||||| || |||||||| ||||| ||||||
Sbjct: 404 ttcatgaaggagctgtggagcctcctactcagtgcacaacagaatgctagtggggtgccc 463
Query: 440 cagcaatttttggatgcaaaggaggctgagattcagcagagaaaggcggaagaggctaga 499
|| || ||||| |||||||||| |||||||||||||||| |||||| || || ||||
Sbjct: 464 caacagtttttagatgcaaagggagctgagattcagcagaaaaaggcagaggaaagtaga 523
Query: 500 attgcccaggagatccagaagaagcgagagaaagatggtagggacgcagaactagataaa 559
||||| ||||||||||||||||| || ||||||||||| ||||| ||||||||| |||
Sbjct: 524 attgctcaggagatccagaagaaacgggagaaagatggaagggagcaagaactagagaaa 583
Query: 560 cgcaaaatgatggccggggatactggtaattcaagat 596
| ||| |||||| ||||||| | |||||||| ||||
Sbjct: 584 caaaaattgatggacggggatgccggtaattctagat 620
Score = 115 bits (58), Expect = 9e-22
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 2726 gaagtgtgctcatatgatacctgtttaatgttctgtatgtttatgtggcagttgatctga 2785
|||||||||| |||||| ||| |||||||||||||||||||| ||||||||||| ||||
Sbjct: 2697 gaagtgtgcttatatgactcctatttaatgttctgtatgtttacgtggcagttgacctga 2756
Query: 2786 gtaattgacgattcctgagctgtttccttg 2815
|||||||| |||||||||||||||| ||||
Sbjct: 2757 gtaattgaggattcctgagctgtttgcttg 2786
Score = 113 bits (57), Expect = 4e-21
Identities = 125/147 (85%), Gaps = 3/147 (2%)
Strand = Plus / Plus
Query: 2071 cagttcaggctcagaagaatctgagaaacacagatcccagtctgagaagcgaagacataa 2130
||||||||| ||||||||||| | |||||| |||||||| ||||||||||||| |||||
Sbjct: 2200 cagttcaggttcagaagaatcagggaaacatagatcccattctgagaagcgaaagcataa 2259
Query: 2131 aaagggtcacaagcataagaagcattatgatgatagttctgat---tctgattctgactc 2187
|||| | | |||||||||| | ||||||||| ||||||||| ||| |||| || ||
Sbjct: 2260 aaagagccgtaagcataagagacgttatgatgacagttctgatgaatctaattcggagtc 2319
Query: 2188 agatgacaaggagtccaagaggaggag 2214
||||||||| |||||||||||||||||
Sbjct: 2320 agatgacaaagagtccaagaggaggag 2346
Score = 83.8 bits (42), Expect = 3e-12
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 2333 tcagatcttgagaaggatcgtcaatctggctcagacgctgatgttgggaagaaaggttca 2392
||||||||||||||||||||| |||||| |||||| ||||||| | ||||||||||||||
Sbjct: 2471 tcagatcttgagaaggatcgtgaatctgactcagatgctgatgctaggaagaaaggttca 2530
Query: 2393 ta 2394
||
Sbjct: 2531 ta 2532
Score = 77.8 bits (39), Expect = 2e-10
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 806 tcagcttcacctagacgttctgtttccccccgaaggcattccccaagaatcgctccttca 865
|||| ||||||||| |||||| |||| || |||| || ||| ||||||| | |||||
Sbjct: 827 tcagtttcacctaggcgttctttttctccacgaaagcgttctccaagaagtaccccttcg 886
Query: 866 atgtctaggcggaggtcaccgtattccaggagatcaccttcggtacc 912
||||| |||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 887 atgtcgaggcggagatcaccgtattccagaagatcaccttcagtacc 933
Score = 71.9 bits (36), Expect = 1e-08
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 2496 cttcagatgttgagaaggaccatgaatctgactcggatgctgatgttaggaagagagttt 2555
|||||||| |||||||||| | |||||||||||| |||||||||| |||||||| || ||
Sbjct: 2469 cttcagatcttgagaaggatcgtgaatctgactcagatgctgatgctaggaagaaaggtt 2528
Query: 2556 cata 2559
||||
Sbjct: 2529 cata 2532
Score = 61.9 bits (31), Expect = 1e-05
Identities = 118/147 (80%)
Strand = Plus / Plus
Query: 641 gatgctgagaaagaaaaggaactggacttgaagcatagctcgagaacaaagagccgggaa 700
||||||||| | ||||| |||||||| | ||||||||||| ||| ||||||||||||||
Sbjct: 638 gatgctgaggaggaaaaagaactggattctaagcatagctcaagagcaaagagccgggaa 697
Query: 701 catcgaagacctaggagcacatctctgtcgccccgtggtaggcaacggtctatttctcca 760
| || | ||||||| || ||||||| || ||||||| || ||| |||||||
Sbjct: 698 agccttaggtccaggagcatctccttgtcgcctcgcggtaggcggcgatctgtttctcct 757
Query: 761 aggaggcgctctccatccccttccaga 787
|||||||| |||||||| |||||||||
Sbjct: 758 aggaggcgttctccatctccttccaga 784
Score = 61.9 bits (31), Expect = 1e-05
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 1088 cggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggccg 1147
|||||||| || ||||||||||| |||||||| ||||| ||||| | |||||| |||||
Sbjct: 1199 cggtccccttcaccaggaagacgtaggccacggtccccttcaccaggaagacgtaggcca 1258
Query: 1148 cggtccccatc 1158
||||| |||||
Sbjct: 1259 cggtctccatc 1269
Score = 60.0 bits (30), Expect = 5e-05
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 1607 cgtgcaagggagaatgcacggaaggccaattcatcacgcaggatatccaaggatttctca 1666
|||||||| ||||||||||| || || |||||||||||||| | | ||||||||||||
Sbjct: 1754 cgtgcaagagagaatgcacgaaaagcaaattcatcacgcagaaaaattaaggatttctca 1813
Query: 1667 gctgatctgcaaccaaag 1684
|| |||||| ||| ||||
Sbjct: 1814 gcagatctggaactaaag 1831
Score = 58.0 bits (29), Expect = 2e-04
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 1089 ggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggccgc 1148
|||| ||||||||||||||||| ||||| || ||||| ||||| | | |||| ||||| |
Sbjct: 1110 ggtctccatctccaggaagacgtaggcctcggtccccttcacccggacgacgtaggccac 1169
Query: 1149 ggtccccatcacc 1161
||||||| |||||
Sbjct: 1170 ggtccccttcacc 1182
Score = 46.1 bits (23), Expect = 0.70
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 1088 cggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggcc 1146
|||||||| || ||||||||||| |||||||| || ||||| || | |||||||||||
Sbjct: 1229 cggtccccttcaccaggaagacgtaggccacggtctccatctccgggtagacgcaggcc 1287
>ref|NM_001056219.1| Oryza sativa (japonica cultivar-group) Os03g0270200 (Os03g0270200)
mRNA, complete cds
Length = 3183
Score = 414 bits (209), Expect = e-112
Identities = 413/481 (85%)
Strand = Plus / Plus
Query: 80 aagatgtcaggaggcttcttccgggggacgtcggccgaccaggataccagattctccaac 139
|||||||| || |||||||||||||||||||||||||| ||||| ||| | |||||||||
Sbjct: 67 aagatgtcgggcggcttcttccgggggacgtcggccgatcaggacacccgtttctccaac 126
Query: 140 aagcatgccaagttgctgaagacacagaagttcgcgtctgagcttgaccatcaggtggac 199
||||| || ||| |||| ||||| |||||||||||| | |||||||| || | |||||||
Sbjct: 127 aagcaggcgaagctgctcaagacgcagaagttcgcgcccgagcttgaacacctggtggac 186
Query: 200 atgtcaaaggtgaagatggacgtgatgaagccgtggattgccacacgggtcactgagctt 259
||| | |||||||||||||| |||||||| || ||||| || || || ||||| |||||
Sbjct: 187 atgactaaggtgaagatggatgtgatgaaaccatggatcgcgacccgtgtcaccgagctc 246
Query: 260 cttgggttcgaggacgaagtgcttatcaacttcatctacggcctgctcgatgcgaaggag 319
|| |||||||||||||||||||| |||||||||||||||||||| ||||| | |||||||
Sbjct: 247 ctagggttcgaggacgaagtgctcatcaacttcatctacggcctcctcgaagagaaggag 306
Query: 320 gtggacgggaagtacatacagatccagctgacggggttcatggagaagaatacaataaag 379
| ||| || ||| | |||||||| |||||||| || |||||||||||||| ||| | |||
Sbjct: 307 gcggatggaaagaagatacagatacagctgacaggattcatggagaagaacacagtgaag 366
Query: 380 ttcatgagggagctgtggagcctccttctaagtgcgcagcagaatgccagtggtgtgccc 439
||||||| |||||||||||||||||| || ||||| || |||||||| ||||| ||||||
Sbjct: 367 ttcatgaaggagctgtggagcctcctactcagtgcacaacagaatgctagtggggtgccc 426
Query: 440 cagcaatttttggatgcaaaggaggctgagattcagcagagaaaggcggaagaggctaga 499
|| || ||||| ||||||||||| |||||||||||||||| |||||| || || ||||
Sbjct: 427 caacagtttttagatgcaaaggaagctgagattcagcagaaaaaggcagaggaaagtaga 486
Query: 500 attgcccaggagatccagaagaagcgagagaaagatggtagggacgcagaactagataaa 559
||||| ||||||||||||||||| || ||||||||||| ||||| ||||||||| |||
Sbjct: 487 attgctcaggagatccagaagaaacgggagaaagatggaagggagcaagaactagagaaa 546
Query: 560 c 560
|
Sbjct: 547 c 547
Score = 115 bits (58), Expect = 9e-22
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 2726 gaagtgtgctcatatgatacctgtttaatgttctgtatgtttatgtggcagttgatctga 2785
|||||||||| |||||| ||| |||||||||||||||||||| ||||||||||| ||||
Sbjct: 2715 gaagtgtgcttatatgactcctatttaatgttctgtatgtttacgtggcagttgacctga 2774
Query: 2786 gtaattgacgattcctgagctgtttccttg 2815
|||||||| |||||||||||||||| ||||
Sbjct: 2775 gtaattgaggattcctgagctgtttgcttg 2804
Score = 113 bits (57), Expect = 4e-21
Identities = 125/147 (85%), Gaps = 3/147 (2%)
Strand = Plus / Plus
Query: 2071 cagttcaggctcagaagaatctgagaaacacagatcccagtctgagaagcgaagacataa 2130
||||||||| ||||||||||| | |||||| |||||||| ||||||||||||| |||||
Sbjct: 2218 cagttcaggttcagaagaatcagggaaacatagatcccattctgagaagcgaaagcataa 2277
Query: 2131 aaagggtcacaagcataagaagcattatgatgatagttctgat---tctgattctgactc 2187
|||| | | |||||||||| | ||||||||| ||||||||| ||| |||| || ||
Sbjct: 2278 aaagagccgtaagcataagagacgttatgatgacagttctgatgaatctaattcggagtc 2337
Query: 2188 agatgacaaggagtccaagaggaggag 2214
||||||||| |||||||||||||||||
Sbjct: 2338 agatgacaaagagtccaagaggaggag 2364
Score = 83.8 bits (42), Expect = 3e-12
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 2333 tcagatcttgagaaggatcgtcaatctggctcagacgctgatgttgggaagaaaggttca 2392
||||||||||||||||||||| |||||| |||||| ||||||| | ||||||||||||||
Sbjct: 2489 tcagatcttgagaaggatcgtgaatctgactcagatgctgatgctaggaagaaaggttca 2548
Query: 2393 ta 2394
||
Sbjct: 2549 ta 2550
Score = 77.8 bits (39), Expect = 2e-10
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 806 tcagcttcacctagacgttctgtttccccccgaaggcattccccaagaatcgctccttca 865
|||| ||||||||| |||||| |||| || |||| || ||| ||||||| | |||||
Sbjct: 845 tcagtttcacctaggcgttctttttctccacgaaagcgttctccaagaagtaccccttcg 904
Query: 866 atgtctaggcggaggtcaccgtattccaggagatcaccttcggtacc 912
||||| |||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 905 atgtcgaggcggagatcaccgtattccagaagatcaccttcagtacc 951
Score = 71.9 bits (36), Expect = 1e-08
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 2496 cttcagatgttgagaaggaccatgaatctgactcggatgctgatgttaggaagagagttt 2555
|||||||| |||||||||| | |||||||||||| |||||||||| |||||||| || ||
Sbjct: 2487 cttcagatcttgagaaggatcgtgaatctgactcagatgctgatgctaggaagaaaggtt 2546
Query: 2556 cata 2559
||||
Sbjct: 2547 cata 2550
Score = 69.9 bits (35), Expect = 5e-08
Identities = 119/147 (80%)
Strand = Plus / Plus
Query: 641 gatgctgagaaagaaaaggaactggacttgaagcatagctcgagaacaaagagccgggaa 700
||||||||| | ||||| |||||||| | ||||||||||| ||||||||||||||||||
Sbjct: 656 gatgctgaggaggaaaaagaactggattctaagcatagctcaagaacaaagagccgggaa 715
Query: 701 catcgaagacctaggagcacatctctgtcgccccgtggtaggcaacggtctatttctcca 760
| || | ||||||| || ||||||| || ||||||| || ||| |||||||
Sbjct: 716 agccttaggtccaggagcatctccttgtcgcctcgcggtaggcggcgatctgtttctcct 775
Query: 761 aggaggcgctctccatccccttccaga 787
|||||||| |||||||| |||||||||
Sbjct: 776 aggaggcgttctccatctccttccaga 802
Score = 61.9 bits (31), Expect = 1e-05
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 1088 cggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggccg 1147
|||||||| || ||||||||||| |||||||| ||||| ||||| | |||||| |||||
Sbjct: 1217 cggtccccttcaccaggaagacgtaggccacggtccccttcaccaggaagacgtaggcca 1276
Query: 1148 cggtccccatc 1158
||||| |||||
Sbjct: 1277 cggtctccatc 1287
Score = 60.0 bits (30), Expect = 5e-05
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 1607 cgtgcaagggagaatgcacggaaggccaattcatcacgcaggatatccaaggatttctca 1666
|||||||| ||||||||||| || || |||||||||||||| | | ||||||||||||
Sbjct: 1772 cgtgcaagagagaatgcacgaaaagcaaattcatcacgcagaaaaattaaggatttctca 1831
Query: 1667 gctgatctgcaaccaaag 1684
|| |||||| ||| ||||
Sbjct: 1832 gcagatctggaactaaag 1849
Score = 58.0 bits (29), Expect = 2e-04
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 1089 ggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggccgc 1148
|||| ||||||||||||||||| ||||| || ||||| ||||| | | |||| ||||| |
Sbjct: 1128 ggtctccatctccaggaagacgtaggcctcggtccccttcacccggacgacgtaggccac 1187
Query: 1149 ggtccccatcacc 1161
||||||| |||||
Sbjct: 1188 ggtccccttcacc 1200
Score = 46.1 bits (23), Expect = 0.70
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 1088 cggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggcc 1146
|||||||| || ||||||||||| |||||||| || ||||| || | |||||||||||
Sbjct: 1247 cggtccccttcaccaggaagacgtaggccacggtctccatctccgggtagacgcaggcc 1305
>dbj|AK102826.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109C10, full
insert sequence
Length = 3185
Score = 414 bits (209), Expect = e-112
Identities = 413/481 (85%)
Strand = Plus / Plus
Query: 80 aagatgtcaggaggcttcttccgggggacgtcggccgaccaggataccagattctccaac 139
|||||||| || |||||||||||||||||||||||||| ||||| ||| | |||||||||
Sbjct: 69 aagatgtcgggcggcttcttccgggggacgtcggccgatcaggacacccgtttctccaac 128
Query: 140 aagcatgccaagttgctgaagacacagaagttcgcgtctgagcttgaccatcaggtggac 199
||||| || ||| |||| ||||| |||||||||||| | |||||||| || | |||||||
Sbjct: 129 aagcaggcgaagctgctcaagacgcagaagttcgcgcccgagcttgaacacctggtggac 188
Query: 200 atgtcaaaggtgaagatggacgtgatgaagccgtggattgccacacgggtcactgagctt 259
||| | |||||||||||||| |||||||| || ||||| || || || ||||| |||||
Sbjct: 189 atgactaaggtgaagatggatgtgatgaaaccatggatcgcgacccgtgtcaccgagctc 248
Query: 260 cttgggttcgaggacgaagtgcttatcaacttcatctacggcctgctcgatgcgaaggag 319
|| |||||||||||||||||||| |||||||||||||||||||| ||||| | |||||||
Sbjct: 249 ctagggttcgaggacgaagtgctcatcaacttcatctacggcctcctcgaagagaaggag 308
Query: 320 gtggacgggaagtacatacagatccagctgacggggttcatggagaagaatacaataaag 379
| ||| || ||| | |||||||| |||||||| || |||||||||||||| ||| | |||
Sbjct: 309 gcggatggaaagaagatacagatacagctgacaggattcatggagaagaacacagtgaag 368
Query: 380 ttcatgagggagctgtggagcctccttctaagtgcgcagcagaatgccagtggtgtgccc 439
||||||| |||||||||||||||||| || ||||| || |||||||| ||||| ||||||
Sbjct: 369 ttcatgaaggagctgtggagcctcctactcagtgcacaacagaatgctagtggggtgccc 428
Query: 440 cagcaatttttggatgcaaaggaggctgagattcagcagagaaaggcggaagaggctaga 499
|| || ||||| ||||||||||| |||||||||||||||| |||||| || || ||||
Sbjct: 429 caacagtttttagatgcaaaggaagctgagattcagcagaaaaaggcagaggaaagtaga 488
Query: 500 attgcccaggagatccagaagaagcgagagaaagatggtagggacgcagaactagataaa 559
||||| ||||||||||||||||| || ||||||||||| ||||| ||||||||| |||
Sbjct: 489 attgctcaggagatccagaagaaacgggagaaagatggaagggagcaagaactagagaaa 548
Query: 560 c 560
|
Sbjct: 549 c 549
Score = 115 bits (58), Expect = 9e-22
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 2726 gaagtgtgctcatatgatacctgtttaatgttctgtatgtttatgtggcagttgatctga 2785
|||||||||| |||||| ||| |||||||||||||||||||| ||||||||||| ||||
Sbjct: 2717 gaagtgtgcttatatgactcctatttaatgttctgtatgtttacgtggcagttgacctga 2776
Query: 2786 gtaattgacgattcctgagctgtttccttg 2815
|||||||| |||||||||||||||| ||||
Sbjct: 2777 gtaattgaggattcctgagctgtttgcttg 2806
Score = 113 bits (57), Expect = 4e-21
Identities = 125/147 (85%), Gaps = 3/147 (2%)
Strand = Plus / Plus
Query: 2071 cagttcaggctcagaagaatctgagaaacacagatcccagtctgagaagcgaagacataa 2130
||||||||| ||||||||||| | |||||| |||||||| ||||||||||||| |||||
Sbjct: 2220 cagttcaggttcagaagaatcagggaaacatagatcccattctgagaagcgaaagcataa 2279
Query: 2131 aaagggtcacaagcataagaagcattatgatgatagttctgat---tctgattctgactc 2187
|||| | | |||||||||| | ||||||||| ||||||||| ||| |||| || ||
Sbjct: 2280 aaagagccgtaagcataagagacgttatgatgacagttctgatgaatctaattcggagtc 2339
Query: 2188 agatgacaaggagtccaagaggaggag 2214
||||||||| |||||||||||||||||
Sbjct: 2340 agatgacaaagagtccaagaggaggag 2366
Score = 83.8 bits (42), Expect = 3e-12
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 2333 tcagatcttgagaaggatcgtcaatctggctcagacgctgatgttgggaagaaaggttca 2392
||||||||||||||||||||| |||||| |||||| ||||||| | ||||||||||||||
Sbjct: 2491 tcagatcttgagaaggatcgtgaatctgactcagatgctgatgctaggaagaaaggttca 2550
Query: 2393 ta 2394
||
Sbjct: 2551 ta 2552
Score = 77.8 bits (39), Expect = 2e-10
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 806 tcagcttcacctagacgttctgtttccccccgaaggcattccccaagaatcgctccttca 865
|||| ||||||||| |||||| |||| || |||| || ||| ||||||| | |||||
Sbjct: 847 tcagtttcacctaggcgttctttttctccacgaaagcgttctccaagaagtaccccttcg 906
Query: 866 atgtctaggcggaggtcaccgtattccaggagatcaccttcggtacc 912
||||| |||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 907 atgtcgaggcggagatcaccgtattccagaagatcaccttcagtacc 953
Score = 71.9 bits (36), Expect = 1e-08
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 2496 cttcagatgttgagaaggaccatgaatctgactcggatgctgatgttaggaagagagttt 2555
|||||||| |||||||||| | |||||||||||| |||||||||| |||||||| || ||
Sbjct: 2489 cttcagatcttgagaaggatcgtgaatctgactcagatgctgatgctaggaagaaaggtt 2548
Query: 2556 cata 2559
||||
Sbjct: 2549 cata 2552
Score = 69.9 bits (35), Expect = 5e-08
Identities = 119/147 (80%)
Strand = Plus / Plus
Query: 641 gatgctgagaaagaaaaggaactggacttgaagcatagctcgagaacaaagagccgggaa 700
||||||||| | ||||| |||||||| | ||||||||||| ||||||||||||||||||
Sbjct: 658 gatgctgaggaggaaaaagaactggattctaagcatagctcaagaacaaagagccgggaa 717
Query: 701 catcgaagacctaggagcacatctctgtcgccccgtggtaggcaacggtctatttctcca 760
| || | ||||||| || ||||||| || ||||||| || ||| |||||||
Sbjct: 718 agccttaggtccaggagcatctccttgtcgcctcgcggtaggcggcgatctgtttctcct 777
Query: 761 aggaggcgctctccatccccttccaga 787
|||||||| |||||||| |||||||||
Sbjct: 778 aggaggcgttctccatctccttccaga 804
Score = 61.9 bits (31), Expect = 1e-05
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 1088 cggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggccg 1147
|||||||| || ||||||||||| |||||||| ||||| ||||| | |||||| |||||
Sbjct: 1219 cggtccccttcaccaggaagacgtaggccacggtccccttcaccaggaagacgtaggcca 1278
Query: 1148 cggtccccatc 1158
||||| |||||
Sbjct: 1279 cggtctccatc 1289
Score = 60.0 bits (30), Expect = 5e-05
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 1607 cgtgcaagggagaatgcacggaaggccaattcatcacgcaggatatccaaggatttctca 1666
|||||||| ||||||||||| || || |||||||||||||| | | ||||||||||||
Sbjct: 1774 cgtgcaagagagaatgcacgaaaagcaaattcatcacgcagaaaaattaaggatttctca 1833
Query: 1667 gctgatctgcaaccaaag 1684
|| |||||| ||| ||||
Sbjct: 1834 gcagatctggaactaaag 1851
Score = 58.0 bits (29), Expect = 2e-04
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 1089 ggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggccgc 1148
|||| ||||||||||||||||| ||||| || ||||| ||||| | | |||| ||||| |
Sbjct: 1130 ggtctccatctccaggaagacgtaggcctcggtccccttcacccggacgacgtaggccac 1189
Query: 1149 ggtccccatcacc 1161
||||||| |||||
Sbjct: 1190 ggtccccttcacc 1202
Score = 46.1 bits (23), Expect = 0.70
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 1088 cggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggcc 1146
|||||||| || ||||||||||| |||||||| || ||||| || | |||||||||||
Sbjct: 1249 cggtccccttcaccaggaagacgtaggccacggtctccatctccgggtagacgcaggcc 1307
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
Length = 36192742
Score = 157 bits (79), Expect = 3e-34
Identities = 133/151 (88%)
Strand = Plus / Minus
Query: 335 atacagatccagctgacggggttcatggagaagaatacaataaagttcatgagggagctg 394
|||||||| |||||||| || |||||||||||||| ||| | |||||||||| |||||||
Sbjct: 9004262 atacagatacagctgacaggattcatggagaagaacacagtgaagttcatgaaggagctg 9004203
Query: 395 tggagcctccttctaagtgcgcagcagaatgccagtggtgtgccccagcaatttttggat 454
||||||||||| || ||||| || |||||||| ||||| |||||||| || ||||| |||
Sbjct: 9004202 tggagcctcctactcagtgcacaacagaatgctagtggggtgccccaacagtttttagat 9004143
Query: 455 gcaaaggaggctgagattcagcagagaaagg 485
|||||||| |||||||||||||||| |||||
Sbjct: 9004142 gcaaaggaagctgagattcagcagaaaaagg 9004112
Score = 125 bits (63), Expect = 9e-25
Identities = 105/119 (88%)
Strand = Plus / Minus
Query: 191 caggtggacatgtcaaaggtgaagatggacgtgatgaagccgtggattgccacacgggtc 250
|||||||||||| | |||||||||||||| |||||||| || ||||| || || || |||
Sbjct: 9004960 caggtggacatgactaaggtgaagatggatgtgatgaaaccatggatcgcgacccgtgtc 9004901
Query: 251 actgagcttcttgggttcgaggacgaagtgcttatcaacttcatctacggcctgctcga 309
|| ||||| || |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 9004900 accgagctcctagggttcgaggacgaagtgctcatcaacttcatctacggcctcctcga 9004842
Score = 115 bits (58), Expect = 9e-22
Identities = 82/90 (91%)
Strand = Plus / Minus
Query: 2726 gaagtgtgctcatatgatacctgtttaatgttctgtatgtttatgtggcagttgatctga 2785
|||||||||| |||||| ||| |||||||||||||||||||| ||||||||||| ||||
Sbjct: 8999834 gaagtgtgcttatatgactcctatttaatgttctgtatgtttacgtggcagttgacctga 8999775
Query: 2786 gtaattgacgattcctgagctgtttccttg 2815
|||||||| |||||||||||||||| ||||
Sbjct: 8999774 gtaattgaggattcctgagctgtttgcttg 8999745
Score = 113 bits (57), Expect = 4e-21
Identities = 125/147 (85%), Gaps = 3/147 (2%)
Strand = Plus / Minus
Query: 2071 cagttcaggctcagaagaatctgagaaacacagatcccagtctgagaagcgaagacataa 2130
||||||||| ||||||||||| | |||||| |||||||| ||||||||||||| |||||
Sbjct: 9000331 cagttcaggttcagaagaatcagggaaacatagatcccattctgagaagcgaaagcataa 9000272
Query: 2131 aaagggtcacaagcataagaagcattatgatgatagttctgat---tctgattctgactc 2187
|||| | | |||||||||| | ||||||||| ||||||||| ||| |||| || ||
Sbjct: 9000271 aaagagccgtaagcataagagacgttatgatgacagttctgatgaatctaattcggagtc 9000212
Query: 2188 agatgacaaggagtccaagaggaggag 2214
||||||||| |||||||||||||||||
Sbjct: 9000211 agatgacaaagagtccaagaggaggag 9000185
Score = 83.8 bits (42), Expect = 3e-12
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 2333 tcagatcttgagaaggatcgtcaatctggctcagacgctgatgttgggaagaaaggttca 2392
||||||||||||||||||||| |||||| |||||| ||||||| | ||||||||||||||
Sbjct: 9000060 tcagatcttgagaaggatcgtgaatctgactcagatgctgatgctaggaagaaaggttca 9000001
Query: 2393 ta 2394
||
Sbjct: 9000000 ta 8999999
Score = 79.8 bits (40), Expect = 5e-11
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 103 ggggacgtcggccgaccaggataccagattctccaacaagcatgccaagttgctgaagac 162
||||||||||||||| ||||| ||| | |||||||||||||| || ||| |||| |||||
Sbjct: 9005171 ggggacgtcggccgatcaggacacccgtttctccaacaagcaggcgaagctgctcaagac 9005112
Query: 163 acagaagttcgcgtctgagcttga 186
|||||||||||| | ||||||||
Sbjct: 9005111 gcagaagttcgcgcccgagcttga 9005088
Score = 77.8 bits (39), Expect = 2e-10
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 806 tcagcttcacctagacgttctgtttccccccgaaggcattccccaagaatcgctccttca 865
|||| ||||||||| |||||| |||| || |||| || ||| ||||||| | |||||
Sbjct: 9002518 tcagtttcacctaggcgttctttttctccacgaaagcgttctccaagaagtaccccttcg 9002459
Query: 866 atgtctaggcggaggtcaccgtattccaggagatcaccttcggtacc 912
||||| |||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 9002458 atgtcgaggcggagatcaccgtattccagaagatcaccttcagtacc 9002412
Score = 71.9 bits (36), Expect = 1e-08
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 2496 cttcagatgttgagaaggaccatgaatctgactcggatgctgatgttaggaagagagttt 2555
|||||||| |||||||||| | |||||||||||| |||||||||| |||||||| || ||
Sbjct: 9000062 cttcagatcttgagaaggatcgtgaatctgactcagatgctgatgctaggaagaaaggtt 9000003
Query: 2556 cata 2559
||||
Sbjct: 9000002 cata 8999999
Score = 65.9 bits (33), Expect = 8e-07
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 496 tagaattgcccaggagatccagaagaagcgagagaaagatggtagggacgcagaactaga 555
||||||||| ||||||||||||||||| || ||||||||||| ||||| |||||||||
Sbjct: 9003662 tagaattgctcaggagatccagaagaaacgggagaaagatggaagggagcaagaactaga 9003603
Query: 556 taaac 560
||||
Sbjct: 9003602 gaaac 9003598
Score = 61.9 bits (31), Expect = 1e-05
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 1088 cggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggccg 1147
|||||||| || ||||||||||| |||||||| ||||| ||||| | |||||| |||||
Sbjct: 9002146 cggtccccttcaccaggaagacgtaggccacggtccccttcaccaggaagacgtaggcca 9002087
Query: 1148 cggtccccatc 1158
||||| |||||
Sbjct: 9002086 cggtctccatc 9002076
Score = 58.0 bits (29), Expect = 2e-04
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 1089 ggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggccgc 1148
|||| ||||||||||||||||| ||||| || ||||| ||||| | | |||| ||||| |
Sbjct: 9002235 ggtctccatctccaggaagacgtaggcctcggtccccttcacccggacgacgtaggccac 9002176
Query: 1149 ggtccccatcacc 1161
||||||| |||||
Sbjct: 9002175 ggtccccttcacc 9002163
Score = 58.0 bits (29), Expect = 2e-04
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 641 gatgctgagaaagaaaaggaactggacttgaagcatagctcgagaacaaagagccgg 697
||||||||| | ||||| |||||||| | ||||||||||| |||||||||||||||
Sbjct: 9003404 gatgctgaggaggaaaaagaactggattctaagcatagctcaagaacaaagagccgg 9003348
Score = 50.1 bits (25), Expect = 0.045
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1616 gagaatgcacggaaggccaattcatcacgcaggatatccaaggatttctcagctgatctg 1675
||||||||||| || || |||||||||||||| | | |||||||||||||| ||||||
Sbjct: 9001224 gagaatgcacgaaaagcaaattcatcacgcagaaaaattaaggatttctcagcagatctg 9001165
Query: 1676 caaccaaag 1684
||| ||||
Sbjct: 9001164 gaactaaag 9001156
Score = 46.1 bits (23), Expect = 0.70
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 1088 cggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggcc 1146
|||||||| || ||||||||||| |||||||| || ||||| || | |||||||||||
Sbjct: 9002116 cggtccccttcaccaggaagacgtaggccacggtctccatctccgggtagacgcaggcc 9002058
>gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0071M09,
complete sequence
Length = 143595
Score = 157 bits (79), Expect = 3e-34
Identities = 133/151 (88%)
Strand = Plus / Minus
Query: 335 atacagatccagctgacggggttcatggagaagaatacaataaagttcatgagggagctg 394
|||||||| |||||||| || |||||||||||||| ||| | |||||||||| |||||||
Sbjct: 131288 atacagatacagctgacaggattcatggagaagaacacagtgaagttcatgaaggagctg 131229
Query: 395 tggagcctccttctaagtgcgcagcagaatgccagtggtgtgccccagcaatttttggat 454
||||||||||| || ||||| || |||||||| ||||| |||||||| || ||||| |||
Sbjct: 131228 tggagcctcctactcagtgcacaacagaatgctagtggggtgccccaacagtttttagat 131169
Query: 455 gcaaaggaggctgagattcagcagagaaagg 485
|||||||| |||||||||||||||| |||||
Sbjct: 131168 gcaaaggaagctgagattcagcagaaaaagg 131138
Score = 125 bits (63), Expect = 9e-25
Identities = 105/119 (88%)
Strand = Plus / Minus
Query: 191 caggtggacatgtcaaaggtgaagatggacgtgatgaagccgtggattgccacacgggtc 250
|||||||||||| | |||||||||||||| |||||||| || ||||| || || || |||
Sbjct: 131986 caggtggacatgactaaggtgaagatggatgtgatgaaaccatggatcgcgacccgtgtc 131927
Query: 251 actgagcttcttgggttcgaggacgaagtgcttatcaacttcatctacggcctgctcga 309
|| ||||| || |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 131926 accgagctcctagggttcgaggacgaagtgctcatcaacttcatctacggcctcctcga 131868
Score = 115 bits (58), Expect = 9e-22
Identities = 82/90 (91%)
Strand = Plus / Minus
Query: 2726 gaagtgtgctcatatgatacctgtttaatgttctgtatgtttatgtggcagttgatctga 2785
|||||||||| |||||| ||| |||||||||||||||||||| ||||||||||| ||||
Sbjct: 126860 gaagtgtgcttatatgactcctatttaatgttctgtatgtttacgtggcagttgacctga 126801
Query: 2786 gtaattgacgattcctgagctgtttccttg 2815
|||||||| |||||||||||||||| ||||
Sbjct: 126800 gtaattgaggattcctgagctgtttgcttg 126771
Score = 113 bits (57), Expect = 4e-21
Identities = 125/147 (85%), Gaps = 3/147 (2%)
Strand = Plus / Minus
Query: 2071 cagttcaggctcagaagaatctgagaaacacagatcccagtctgagaagcgaagacataa 2130
||||||||| ||||||||||| | |||||| |||||||| ||||||||||||| |||||
Sbjct: 127357 cagttcaggttcagaagaatcagggaaacatagatcccattctgagaagcgaaagcataa 127298
Query: 2131 aaagggtcacaagcataagaagcattatgatgatagttctgat---tctgattctgactc 2187
|||| | | |||||||||| | ||||||||| ||||||||| ||| |||| || ||
Sbjct: 127297 aaagagccgtaagcataagagacgttatgatgacagttctgatgaatctaattcggagtc 127238
Query: 2188 agatgacaaggagtccaagaggaggag 2214
||||||||| |||||||||||||||||
Sbjct: 127237 agatgacaaagagtccaagaggaggag 127211
Score = 83.8 bits (42), Expect = 3e-12
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 2333 tcagatcttgagaaggatcgtcaatctggctcagacgctgatgttgggaagaaaggttca 2392
||||||||||||||||||||| |||||| |||||| ||||||| | ||||||||||||||
Sbjct: 127086 tcagatcttgagaaggatcgtgaatctgactcagatgctgatgctaggaagaaaggttca 127027
Query: 2393 ta 2394
||
Sbjct: 127026 ta 127025
Score = 79.8 bits (40), Expect = 5e-11
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 103 ggggacgtcggccgaccaggataccagattctccaacaagcatgccaagttgctgaagac 162
||||||||||||||| ||||| ||| | |||||||||||||| || ||| |||| |||||
Sbjct: 132197 ggggacgtcggccgatcaggacacccgtttctccaacaagcaggcgaagctgctcaagac 132138
Query: 163 acagaagttcgcgtctgagcttga 186
|||||||||||| | ||||||||
Sbjct: 132137 gcagaagttcgcgcccgagcttga 132114
Score = 77.8 bits (39), Expect = 2e-10
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 806 tcagcttcacctagacgttctgtttccccccgaaggcattccccaagaatcgctccttca 865
|||| ||||||||| |||||| |||| || |||| || ||| ||||||| | |||||
Sbjct: 129544 tcagtttcacctaggcgttctttttctccacgaaagcgttctccaagaagtaccccttcg 129485
Query: 866 atgtctaggcggaggtcaccgtattccaggagatcaccttcggtacc 912
||||| |||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 129484 atgtcgaggcggagatcaccgtattccagaagatcaccttcagtacc 129438
Score = 71.9 bits (36), Expect = 1e-08
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 2496 cttcagatgttgagaaggaccatgaatctgactcggatgctgatgttaggaagagagttt 2555
|||||||| |||||||||| | |||||||||||| |||||||||| |||||||| || ||
Sbjct: 127088 cttcagatcttgagaaggatcgtgaatctgactcagatgctgatgctaggaagaaaggtt 127029
Query: 2556 cata 2559
||||
Sbjct: 127028 cata 127025
Score = 65.9 bits (33), Expect = 8e-07
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 496 tagaattgcccaggagatccagaagaagcgagagaaagatggtagggacgcagaactaga 555
||||||||| ||||||||||||||||| || ||||||||||| ||||| |||||||||
Sbjct: 130688 tagaattgctcaggagatccagaagaaacgggagaaagatggaagggagcaagaactaga 130629
Query: 556 taaac 560
||||
Sbjct: 130628 gaaac 130624
Score = 61.9 bits (31), Expect = 1e-05
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 1088 cggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggccg 1147
|||||||| || ||||||||||| |||||||| ||||| ||||| | |||||| |||||
Sbjct: 129172 cggtccccttcaccaggaagacgtaggccacggtccccttcaccaggaagacgtaggcca 129113
Query: 1148 cggtccccatc 1158
||||| |||||
Sbjct: 129112 cggtctccatc 129102
Score = 58.0 bits (29), Expect = 2e-04
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 1089 ggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggccgc 1148
|||| ||||||||||||||||| ||||| || ||||| ||||| | | |||| ||||| |
Sbjct: 129261 ggtctccatctccaggaagacgtaggcctcggtccccttcacccggacgacgtaggccac 129202
Query: 1149 ggtccccatcacc 1161
||||||| |||||
Sbjct: 129201 ggtccccttcacc 129189
Score = 58.0 bits (29), Expect = 2e-04
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 641 gatgctgagaaagaaaaggaactggacttgaagcatagctcgagaacaaagagccgg 697
||||||||| | ||||| |||||||| | ||||||||||| |||||||||||||||
Sbjct: 130430 gatgctgaggaggaaaaagaactggattctaagcatagctcaagaacaaagagccgg 130374
Score = 50.1 bits (25), Expect = 0.045
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1616 gagaatgcacggaaggccaattcatcacgcaggatatccaaggatttctcagctgatctg 1675
||||||||||| || || |||||||||||||| | | |||||||||||||| ||||||
Sbjct: 128250 gagaatgcacgaaaagcaaattcatcacgcagaaaaattaaggatttctcagcagatctg 128191
Query: 1676 caaccaaag 1684
||| ||||
Sbjct: 128190 gaactaaag 128182
Score = 46.1 bits (23), Expect = 0.70
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 1088 cggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggcc 1146
|||||||| || ||||||||||| |||||||| || ||||| || | |||||||||||
Sbjct: 129142 cggtccccttcaccaggaagacgtaggccacggtctccatctccgggtagacgcaggcc 129084
>gb|AC135207.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1261C08,
complete sequence
Length = 99910
Score = 157 bits (79), Expect = 3e-34
Identities = 133/151 (88%)
Strand = Plus / Minus
Query: 335 atacagatccagctgacggggttcatggagaagaatacaataaagttcatgagggagctg 394
|||||||| |||||||| || |||||||||||||| ||| | |||||||||| |||||||
Sbjct: 13463 atacagatacagctgacaggattcatggagaagaacacagtgaagttcatgaaggagctg 13404
Query: 395 tggagcctccttctaagtgcgcagcagaatgccagtggtgtgccccagcaatttttggat 454
||||||||||| || ||||| || |||||||| ||||| |||||||| || ||||| |||
Sbjct: 13403 tggagcctcctactcagtgcacaacagaatgctagtggggtgccccaacagtttttagat 13344
Query: 455 gcaaaggaggctgagattcagcagagaaagg 485
|||||||| |||||||||||||||| |||||
Sbjct: 13343 gcaaaggaagctgagattcagcagaaaaagg 13313
Score = 125 bits (63), Expect = 9e-25
Identities = 105/119 (88%)
Strand = Plus / Minus
Query: 191 caggtggacatgtcaaaggtgaagatggacgtgatgaagccgtggattgccacacgggtc 250
|||||||||||| | |||||||||||||| |||||||| || ||||| || || || |||
Sbjct: 14161 caggtggacatgactaaggtgaagatggatgtgatgaaaccatggatcgcgacccgtgtc 14102
Query: 251 actgagcttcttgggttcgaggacgaagtgcttatcaacttcatctacggcctgctcga 309
|| ||||| || |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 14101 accgagctcctagggttcgaggacgaagtgctcatcaacttcatctacggcctcctcga 14043
Score = 115 bits (58), Expect = 9e-22
Identities = 82/90 (91%)
Strand = Plus / Minus
Query: 2726 gaagtgtgctcatatgatacctgtttaatgttctgtatgtttatgtggcagttgatctga 2785
|||||||||| |||||| ||| |||||||||||||||||||| ||||||||||| ||||
Sbjct: 9035 gaagtgtgcttatatgactcctatttaatgttctgtatgtttacgtggcagttgacctga 8976
Query: 2786 gtaattgacgattcctgagctgtttccttg 2815
|||||||| |||||||||||||||| ||||
Sbjct: 8975 gtaattgaggattcctgagctgtttgcttg 8946
Score = 113 bits (57), Expect = 4e-21
Identities = 125/147 (85%), Gaps = 3/147 (2%)
Strand = Plus / Minus
Query: 2071 cagttcaggctcagaagaatctgagaaacacagatcccagtctgagaagcgaagacataa 2130
||||||||| ||||||||||| | |||||| |||||||| ||||||||||||| |||||
Sbjct: 9532 cagttcaggttcagaagaatcagggaaacatagatcccattctgagaagcgaaagcataa 9473
Query: 2131 aaagggtcacaagcataagaagcattatgatgatagttctgat---tctgattctgactc 2187
|||| | | |||||||||| | ||||||||| ||||||||| ||| |||| || ||
Sbjct: 9472 aaagagccgtaagcataagagacgttatgatgacagttctgatgaatctaattcggagtc 9413
Query: 2188 agatgacaaggagtccaagaggaggag 2214
||||||||| |||||||||||||||||
Sbjct: 9412 agatgacaaagagtccaagaggaggag 9386
Score = 83.8 bits (42), Expect = 3e-12
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 2333 tcagatcttgagaaggatcgtcaatctggctcagacgctgatgttgggaagaaaggttca 2392
||||||||||||||||||||| |||||| |||||| ||||||| | ||||||||||||||
Sbjct: 9261 tcagatcttgagaaggatcgtgaatctgactcagatgctgatgctaggaagaaaggttca 9202
Query: 2393 ta 2394
||
Sbjct: 9201 ta 9200
Score = 79.8 bits (40), Expect = 5e-11
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 103 ggggacgtcggccgaccaggataccagattctccaacaagcatgccaagttgctgaagac 162
||||||||||||||| ||||| ||| | |||||||||||||| || ||| |||| |||||
Sbjct: 14372 ggggacgtcggccgatcaggacacccgtttctccaacaagcaggcgaagctgctcaagac 14313
Query: 163 acagaagttcgcgtctgagcttga 186
|||||||||||| | ||||||||
Sbjct: 14312 gcagaagttcgcgcccgagcttga 14289
Score = 77.8 bits (39), Expect = 2e-10
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 806 tcagcttcacctagacgttctgtttccccccgaaggcattccccaagaatcgctccttca 865
|||| ||||||||| |||||| |||| || |||| || ||| ||||||| | |||||
Sbjct: 11719 tcagtttcacctaggcgttctttttctccacgaaagcgttctccaagaagtaccccttcg 11660
Query: 866 atgtctaggcggaggtcaccgtattccaggagatcaccttcggtacc 912
||||| |||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 11659 atgtcgaggcggagatcaccgtattccagaagatcaccttcagtacc 11613
Score = 71.9 bits (36), Expect = 1e-08
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 2496 cttcagatgttgagaaggaccatgaatctgactcggatgctgatgttaggaagagagttt 2555
|||||||| |||||||||| | |||||||||||| |||||||||| |||||||| || ||
Sbjct: 9263 cttcagatcttgagaaggatcgtgaatctgactcagatgctgatgctaggaagaaaggtt 9204
Query: 2556 cata 2559
||||
Sbjct: 9203 cata 9200
Score = 65.9 bits (33), Expect = 8e-07
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 496 tagaattgcccaggagatccagaagaagcgagagaaagatggtagggacgcagaactaga 555
||||||||| ||||||||||||||||| || ||||||||||| ||||| |||||||||
Sbjct: 12863 tagaattgctcaggagatccagaagaaacgggagaaagatggaagggagcaagaactaga 12804
Query: 556 taaac 560
||||
Sbjct: 12803 gaaac 12799
Score = 61.9 bits (31), Expect = 1e-05
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 1088 cggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggccg 1147
|||||||| || ||||||||||| |||||||| ||||| ||||| | |||||| |||||
Sbjct: 11347 cggtccccttcaccaggaagacgtaggccacggtccccttcaccaggaagacgtaggcca 11288
Query: 1148 cggtccccatc 1158
||||| |||||
Sbjct: 11287 cggtctccatc 11277
Score = 58.0 bits (29), Expect = 2e-04
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 1089 ggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggccgc 1148
|||| ||||||||||||||||| ||||| || ||||| ||||| | | |||| ||||| |
Sbjct: 11436 ggtctccatctccaggaagacgtaggcctcggtccccttcacccggacgacgtaggccac 11377
Query: 1149 ggtccccatcacc 1161
||||||| |||||
Sbjct: 11376 ggtccccttcacc 11364
Score = 58.0 bits (29), Expect = 2e-04
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 641 gatgctgagaaagaaaaggaactggacttgaagcatagctcgagaacaaagagccgg 697
||||||||| | ||||| |||||||| | ||||||||||| |||||||||||||||
Sbjct: 12605 gatgctgaggaggaaaaagaactggattctaagcatagctcaagaacaaagagccgg 12549
Score = 50.1 bits (25), Expect = 0.045
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1616 gagaatgcacggaaggccaattcatcacgcaggatatccaaggatttctcagctgatctg 1675
||||||||||| || || |||||||||||||| | | |||||||||||||| ||||||
Sbjct: 10425 gagaatgcacgaaaagcaaattcatcacgcagaaaaattaaggatttctcagcagatctg 10366
Query: 1676 caaccaaag 1684
||| ||||
Sbjct: 10365 gaactaaag 10357
Score = 46.1 bits (23), Expect = 0.70
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 1088 cggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggcc 1146
|||||||| || ||||||||||| |||||||| || ||||| || | |||||||||||
Sbjct: 11317 cggtccccttcaccaggaagacgtaggccacggtctccatctccgggtagacgcaggcc 11259
>dbj|AK060809.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-G06, full
insert sequence
Length = 2169
Score = 115 bits (58), Expect = 9e-22
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 2726 gaagtgtgctcatatgatacctgtttaatgttctgtatgtttatgtggcagttgatctga 2785
|||||||||| |||||| ||| |||||||||||||||||||| ||||||||||| ||||
Sbjct: 1985 gaagtgtgcttatatgactcctatttaatgttctgtatgtttacgtggcagttgacctga 2044
Query: 2786 gtaattgacgattcctgagctgtttccttg 2815
|||||||| |||||||||||||||| ||||
Sbjct: 2045 gtaattgaggattcctgagctgtttgcttg 2074
Score = 113 bits (57), Expect = 4e-21
Identities = 125/147 (85%), Gaps = 3/147 (2%)
Strand = Plus / Plus
Query: 2071 cagttcaggctcagaagaatctgagaaacacagatcccagtctgagaagcgaagacataa 2130
||||||||| ||||||||||| | |||||| |||||||| ||||||||||||| |||||
Sbjct: 1488 cagttcaggttcagaagaatcagggaaacatagatcccattctgagaagcgaaagcataa 1547
Query: 2131 aaagggtcacaagcataagaagcattatgatgatagttctgat---tctgattctgactc 2187
|||| | | |||||||||| | ||||||||| ||||||||| ||| |||| || ||
Sbjct: 1548 aaagagccgtaagcataagagacgttatgatgacagttctgatgaatctaattcggagtc 1607
Query: 2188 agatgacaaggagtccaagaggaggag 2214
||||||||| |||||||||||||||||
Sbjct: 1608 agatgacaaagagtccaagaggaggag 1634
Score = 83.8 bits (42), Expect = 3e-12
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 2333 tcagatcttgagaaggatcgtcaatctggctcagacgctgatgttgggaagaaaggttca 2392
||||||||||||||||||||| |||||| |||||| ||||||| | ||||||||||||||
Sbjct: 1759 tcagatcttgagaaggatcgtgaatctgactcagatgctgatgctaggaagaaaggttca 1818
Query: 2393 ta 2394
||
Sbjct: 1819 ta 1820
Score = 77.8 bits (39), Expect = 2e-10
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 806 tcagcttcacctagacgttctgtttccccccgaaggcattccccaagaatcgctccttca 865
|||| ||||||||| |||||| |||| || |||| || ||| ||||||| | |||||
Sbjct: 115 tcagtttcacctaggcgttctttttctccacgaaagcgttctccaagaagtaccccttcg 174
Query: 866 atgtctaggcggaggtcaccgtattccaggagatcaccttcggtacc 912
||||| |||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 175 atgtcgaggcggagatcaccgtattccagaagatcaccttcagtacc 221
Score = 71.9 bits (36), Expect = 1e-08
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 2496 cttcagatgttgagaaggaccatgaatctgactcggatgctgatgttaggaagagagttt 2555
|||||||| |||||||||| | |||||||||||| |||||||||| |||||||| || ||
Sbjct: 1757 cttcagatcttgagaaggatcgtgaatctgactcagatgctgatgctaggaagaaaggtt 1816
Query: 2556 cata 2559
||||
Sbjct: 1817 cata 1820
Score = 61.9 bits (31), Expect = 1e-05
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 1088 cggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggccg 1147
|||||||| || ||||||||||| |||||||| ||||| ||||| | |||||| |||||
Sbjct: 487 cggtccccttcaccaggaagacgtaggccacggtccccttcaccaggaagacgtaggcca 546
Query: 1148 cggtccccatc 1158
||||| |||||
Sbjct: 547 cggtctccatc 557
Score = 60.0 bits (30), Expect = 5e-05
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 1607 cgtgcaagggagaatgcacggaaggccaattcatcacgcaggatatccaaggatttctca 1666
|||||||| ||||||||||| || || |||||||||||||| | | ||||||||||||
Sbjct: 1042 cgtgcaagagagaatgcacgaaaagcaaattcatcacgcagaaaaattaaggatttctca 1101
Query: 1667 gctgatctgcaaccaaag 1684
|| |||||| ||| ||||
Sbjct: 1102 gcagatctggaactaaag 1119
Score = 58.0 bits (29), Expect = 2e-04
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 1089 ggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggccgc 1148
|||| ||||||||||||||||| ||||| || ||||| ||||| | | |||| ||||| |
Sbjct: 398 ggtctccatctccaggaagacgtaggcctcggtccccttcacccggacgacgtaggccac 457
Query: 1149 ggtccccatcacc 1161
||||||| |||||
Sbjct: 458 ggtccccttcacc 470
Score = 46.1 bits (23), Expect = 0.70
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 1088 cggtccccatctccaggaagacgcaggccacgatccccatcacctgtaagacgcaggcc 1146
|||||||| || ||||||||||| |||||||| || ||||| || | |||||||||||
Sbjct: 517 cggtccccttcaccaggaagacgtaggccacggtctccatctccgggtagacgcaggcc 575
>gb|AC074281.20| Homo sapiens X BAC RP11-66N5 (Roswell Park Cancer Institute Human BAC
Library) complete sequence
Length = 137628
Score = 44.1 bits (22), Expect = 2.7
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2167 ttctgattctgattctgactca 2188
||||||||||||||||||||||
Sbjct: 60354 ttctgattctgattctgactca 60375
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Dec 3, 2006 5:45 PM
Number of letters in database: 18,610,659,111
Number of sequences in database: 4,638,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 512,954,912
Number of extensions: 28010908
Number of successful extensions: 138212
Number of sequences better than 10.0: 33
Number of HSP's gapped: 138196
Number of HSP's successfully gapped: 130
Length of query: 2834
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 2811
Effective length of database: 18,503,978,556
Effective search space: 52014683720916
Effective search space used: 52014683720916
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)