ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf77h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_001054905.1| Oryza sativa (japonica cultivar-group) Os02g... 74 2e-09
2ref|NM_001054447.1| Oryza sativa (japonica cultivar-group) Os02g... 70 4e-08
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 70 4e-08
4dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic D... 70 4e-08
5ref|NM_001055115.1| Oryza sativa (japonica cultivar-group) Os02g... 66 6e-07
6dbj|AP003989.4| Oryza sativa (japonica cultivar-group) genomic D... 66 6e-07
7dbj|AK068122.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 6e-07
8dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-06
9dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-06
10ref|NM_001055114.1| Oryza sativa (japonica cultivar-group) Os02g... 58 1e-04
11ref|NM_001055124.1| Oryza sativa (japonica cultivar-group) Os02g... 54 0.002
12dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic D... 54 0.002
13ref|NM_001055118.1| Oryza sativa (japonica cultivar-group) Os02g... 44 2.1
14ref|XM_711117.1| Candida albicans SC5314 hypothetical protein (C... 44 2.1
15ref|XM_711033.1| Candida albicans SC5314 hypothetical protein (C... 44 2.1
16ref|XM_647755.1| Entamoeba histolytica HM-1:IMSS conserved hypot... 44 2.1
17gb|CP000462.1| Aeromonas hydrophila subsp. hydrophila ATCC 7966,... 42 8.3
18ref|XM_001122985.1| PREDICTED: Apis mellifera similar to Prolife... 42 8.3
19ref|XM_639916.1| Dictyostelium discoideum AX4 hypothetical prote... 42 8.3
20ref|XM_639313.1| Dictyostelium discoideum AX4 hypothetical prote... 42 8.3
21gb|AC146398.4| Pan troglodytes BAC clone RP43-54K1 from 7, compl... 42 8.3
22ref|XM_535270.2| PREDICTED: Canis familiaris similar to transpor... 42 8.3
23gb|AY341029.1| Homo sapiens steroid-5-alpha-reductase, alpha pol... 42 8.3
24ref|XM_461892.1| Debaryomyces hansenii CBS767 hypothetical prote... 42 8.3
25gb|BC113111.1| Homo sapiens centromere protein J, mRNA (cDNA clo... 42 8.3
26emb|AL359701.27| Human DNA sequence from clone RP5-876C12 on chr... 42 8.3
27emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS... 42 8.3
28gb|AC010366.6| Homo sapiens chromosome 5 clone CTD-2044J15, comp... 42 8.3
29emb|AL596173.1| Listeria innocua Clip11262 complete genome, segm... 42 8.3
30gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470... 42 8.3
31emb|BX255915.13| Zebrafish DNA sequence from clone CH211-245L1 i... 42 8.3
32gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 8.3

>ref|NM_001054905.1| Oryza sativa (japonica cultivar-group) Os02g0793500 (Os02g0793500)
            mRNA, complete cds
          Length = 1434
 Score = 73.8 bits (37), Expect = 2e-09
 Identities = 97/117 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1555 ttcctgaagggtatgatctcacctggacaatgtttattcttgaagctgcacccttactga 1614
            |||||||||| | ||||||||| ||||||||||| ||||| ||||| || || || ||||
Sbjct: 965  ttcctgaaggatgtgatctcacatggacaatgttcattctcgaagcagcgcctttcctga 1024

                                                                     
Query: 1615 aggagctatacatgacagtctgggatgatttgtgttcaatggaattggacgaggaga 1671
            ||||||||  |||||| || |||||| ||| ||||   ||||||  |||||||||||
Sbjct: 1025 aggagctacgcatgacggtatgggatcattggtgtaacatggaaaaggacgaggaga 1081



 Score = 61.9 bits (31), Expect = 9e-06
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                       
Query: 606 cctgatgacattctggtcgacattcttgaccgactcaatgtacccgaggctgcaagaacc 665
           |||||||| |||||| |  |||| |||||||| ||| |||| | ||| ||||||||||||
Sbjct: 37  cctgatgatattctgcttaacatccttgaccggctccatgtccgcgatgctgcaagaacc 96

                                  
Query: 666 agcatcctctcaagacggtggag 688
           ||  ||||||| |||||||||||
Sbjct: 97  agtgtcctctccagacggtggag 119



 Score = 44.1 bits (22), Expect = 2.1
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1056 gatgcctgtccaattgcatttggtggtctcactactctcaacataggcaatttcagattt 1115
            ||||| || |||| ||||||||||||||||||    ||||  ||||| ||| | ||||||
Sbjct: 469  gatgcttgcccaactgcatttggtggtctcacacgcctcataatagggaatctaagattt 528

                          
Query: 1116 ggtgaatcagacat 1129
            |||||||| |||||
Sbjct: 529  ggtgaatcggacat 542



to top

>ref|NM_001054447.1| Oryza sativa (japonica cultivar-group) Os02g0713500 (Os02g0713500)
            mRNA, complete cds
          Length = 1368

 Score = 69.9 bits (35), Expect = 4e-08
 Identities = 77/91 (84%)
 Strand = Plus / Plus

                                                                        
Query: 1288 aactcacacggatagtctttgacggttggatagatttccaagatccactggttcttggtc 1347
            |||||||||||||  ||||||  |||||||||| |||||||||||||||   | |||| |
Sbjct: 779  aactcacacggatgatctttggtggttggatagctttccaagatccactttcttttggac 838

                                           
Query: 1348 atgttcctttgctcgagtctgtaagcctcac 1378
            ||||||| || || |||||||||| ||||||
Sbjct: 839  atgttccattactggagtctgtaaccctcac 869



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 69.9 bits (35), Expect = 4e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                            
Query: 1288     aactcacacggatagtctttgacggttggatagatttccaagatccactggttcttggtc 1347
                |||||||||||||  ||||||  |||||||||| |||||||||||||||   | |||| |
Sbjct: 29575262 aactcacacggatgatctttggtggttggatagctttccaagatccactttcttttggac 29575203

                                               
Query: 1348     atgttcctttgctcgagtctgtaagcctcac 1378
                ||||||| || || |||||||||| ||||||
Sbjct: 29575202 atgttccattactggagtctgtaaccctcac 29575172



 Score = 67.9 bits (34), Expect = 1e-07
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                            
Query: 1528     aactaaggtttgtcaacctagttaaacttcctgaagggtatgatctcacctggacaatgt 1587
                |||||||| |||| ||  ||||| | ||||||||||||||||||| | | ||||||||||
Sbjct: 29574909 aactaagggttgtgaatttagttgatcttcctgaagggtatgatccctcgtggacaatgt 29574850

                                                      
Query: 1588     ttattcttgaagctgcacccttactgaaggagctatac 1625
                |  ||||||| ||||||||||   ||| ||||||||||
Sbjct: 29574849 tctttcttgaggctgcaccctccttgagggagctatac 29574812



 Score = 65.9 bits (33), Expect = 6e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                                 
Query: 1591     ttcttgaagctgcacccttactgaaggagctatacatgacagtctggga 1639
                ||||||||||||||||||| ||||||||||||| ||| ||||| |||||
Sbjct: 35467807 ttcttgaagctgcacccttcctgaaggagctatgcatcacagtttggga 35467855



 Score = 63.9 bits (32), Expect = 2e-06
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                            
Query: 1555     ttcctgaagggtatgatctcacctggacaatgtttattcttgaagctgcacccttactga 1614
                |||||||||| | ||||||||| ||||||||||| ||||| ||||| || || || ||||
Sbjct: 33741435 ttcctgaaggatgtgatctcacatggacaatgttcattctcgaagcagcgcctttcctga 33741376

                        
Query: 1615     aggagcta 1622
                ||||||||
Sbjct: 33741375 aggagcta 33741368



 Score = 61.9 bits (31), Expect = 9e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                            
Query: 606      cctgatgacattctggtcgacattcttgaccgactcaatgtacccgaggctgcaagaacc 665
                |||||||| |||||| |  |||| |||||||| ||| |||| | ||| ||||||||||||
Sbjct: 33742434 cctgatgatattctgcttaacatccttgaccggctccatgtccgcgatgctgcaagaacc 33742375

                                       
Query: 666      agcatcctctcaagacggtggag 688
                ||  ||||||| |||||||||||
Sbjct: 33742374 agtgtcctctccagacggtggag 33742352



 Score = 58.0 bits (29), Expect = 1e-04
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                                 
Query: 1591     ttcttgaagctgcacccttactgaaggagctat 1623
                ||||||||||||||||||| |||||||||||||
Sbjct: 35456658 ttcttgaagctgcacccttcctgaaggagctat 35456626



 Score = 54.0 bits (27), Expect = 0.002
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                               
Query: 1578     tggacaatgtttattcttgaagctgcaccct 1608
                ||||||||||| |||||||||||||||||||
Sbjct: 35553075 tggacaatgttcattcttgaagctgcaccct 35553045



 Score = 44.1 bits (22), Expect = 2.1
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                            
Query: 1056     gatgcctgtccaattgcatttggtggtctcactactctcaacataggcaatttcagattt 1115
                ||||| || |||| ||||||||||||||||||    ||||  ||||| ||| | ||||||
Sbjct: 33742002 gatgcttgcccaactgcatttggtggtctcacacgcctcataatagggaatctaagattt 33741943

                              
Query: 1116     ggtgaatcagacat 1129
                |||||||| |||||
Sbjct: 33741942 ggtgaatcggacat 33741929



 Score = 44.1 bits (22), Expect = 2.1
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                              
Query: 1594     ttgaagctgcacccttactgaaggagctatacatgacagtctggga 1639
                |||||||||||||  | ||||||||||||| ||| ||||| |||||
Sbjct: 35517136 ttgaagctgcacctgtcctgaaggagctatgcataacagtttggga 35517091



to top

>dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1479_B12
          Length = 127089

 Score = 69.9 bits (35), Expect = 4e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                         
Query: 1288  aactcacacggatagtctttgacggttggatagatttccaagatccactggttcttggtc 1347
             |||||||||||||  ||||||  |||||||||| |||||||||||||||   | |||| |
Sbjct: 32983 aactcacacggatgatctttggtggttggatagctttccaagatccactttcttttggac 32924

                                            
Query: 1348  atgttcctttgctcgagtctgtaagcctcac 1378
             ||||||| || || |||||||||| ||||||
Sbjct: 32923 atgttccattactggagtctgtaaccctcac 32893



 Score = 67.9 bits (34), Expect = 1e-07
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                         
Query: 1528  aactaaggtttgtcaacctagttaaacttcctgaagggtatgatctcacctggacaatgt 1587
             |||||||| |||| ||  ||||| | ||||||||||||||||||| | | ||||||||||
Sbjct: 32630 aactaagggttgtgaatttagttgatcttcctgaagggtatgatccctcgtggacaatgt 32571

                                                   
Query: 1588  ttattcttgaagctgcacccttactgaaggagctatac 1625
             |  ||||||| ||||||||||   ||| ||||||||||
Sbjct: 32570 tctttcttgaggctgcaccctccttgagggagctatac 32533



to top

>ref|NM_001055115.1| Oryza sativa (japonica cultivar-group) Os02g0825500 (Os02g0825500)
            mRNA, complete cds
          Length = 1981

 Score = 65.9 bits (33), Expect = 6e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                             
Query: 1591 ttcttgaagctgcacccttactgaaggagctatacatgacagtctggga 1639
            ||||||||||||||||||| ||||||||||||| ||| ||||| |||||
Sbjct: 1357 ttcttgaagctgcacccttcctgaaggagctatgcatcacagtttggga 1405



to top

>dbj|AP003989.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1063_D06
          Length = 102439

 Score = 65.9 bits (33), Expect = 6e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                              
Query: 1591  ttcttgaagctgcacccttactgaaggagctatacatgacagtctggga 1639
             ||||||||||||||||||| ||||||||||||| ||| ||||| |||||
Sbjct: 79328 ttcttgaagctgcacccttcctgaaggagctatgcatcacagtttggga 79376



 Score = 58.0 bits (29), Expect = 1e-04
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                              
Query: 1591  ttcttgaagctgcacccttactgaaggagctat 1623
             ||||||||||||||||||| |||||||||||||
Sbjct: 68179 ttcttgaagctgcacccttcctgaaggagctat 68147



to top

>dbj|AK068122.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135H15, full
            insert sequence
          Length = 1983

 Score = 65.9 bits (33), Expect = 6e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                             
Query: 1591 ttcttgaagctgcacccttactgaaggagctatacatgacagtctggga 1639
            ||||||||||||||||||| ||||||||||||| ||| ||||| |||||
Sbjct: 1359 ttcttgaagctgcacccttcctgaaggagctatgcatcacagtttggga 1407



to top

>dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1249_F12
          Length = 133205

 Score = 63.9 bits (32), Expect = 2e-06
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                          
Query: 1555   ttcctgaagggtatgatctcacctggacaatgtttattcttgaagctgcacccttactga 1614
              |||||||||| | ||||||||| ||||||||||| ||||| ||||| || || || ||||
Sbjct: 109842 ttcctgaaggatgtgatctcacatggacaatgttcattctcgaagcagcgcctttcctga 109783

                      
Query: 1615   aggagcta 1622
              ||||||||
Sbjct: 109782 aggagcta 109775



 Score = 61.9 bits (31), Expect = 9e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                          
Query: 606    cctgatgacattctggtcgacattcttgaccgactcaatgtacccgaggctgcaagaacc 665
              |||||||| |||||| |  |||| |||||||| ||| |||| | ||| ||||||||||||
Sbjct: 110841 cctgatgatattctgcttaacatccttgaccggctccatgtccgcgatgctgcaagaacc 110782

                                     
Query: 666    agcatcctctcaagacggtggag 688
              ||  ||||||| |||||||||||
Sbjct: 110781 agtgtcctctccagacggtggag 110759



 Score = 44.1 bits (22), Expect = 2.1
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                          
Query: 1056   gatgcctgtccaattgcatttggtggtctcactactctcaacataggcaatttcagattt 1115
              ||||| || |||| ||||||||||||||||||    ||||  ||||| ||| | ||||||
Sbjct: 110409 gatgcttgcccaactgcatttggtggtctcacacgcctcataatagggaatctaagattt 110350

                            
Query: 1116   ggtgaatcagacat 1129
              |||||||| |||||
Sbjct: 110349 ggtgaatcggacat 110336



to top

>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0700F06
          Length = 139277

 Score = 63.9 bits (32), Expect = 2e-06
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                         
Query: 1555  ttcctgaagggtatgatctcacctggacaatgtttattcttgaagctgcacccttactga 1614
             |||||||||| | ||||||||| ||||||||||| ||||| ||||| || || || ||||
Sbjct: 72302 ttcctgaaggatgtgatctcacatggacaatgttcattctcgaagcagcgcctttcctga 72243

                     
Query: 1615  aggagcta 1622
             ||||||||
Sbjct: 72242 aggagcta 72235



 Score = 61.9 bits (31), Expect = 9e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                         
Query: 606   cctgatgacattctggtcgacattcttgaccgactcaatgtacccgaggctgcaagaacc 665
             |||||||| |||||| |  |||| |||||||| ||| |||| | ||| ||||||||||||
Sbjct: 73301 cctgatgatattctgcttaacatccttgaccggctccatgtccgcgatgctgcaagaacc 73242

                                    
Query: 666   agcatcctctcaagacggtggag 688
             ||  ||||||| |||||||||||
Sbjct: 73241 agtgtcctctccagacggtggag 73219



 Score = 44.1 bits (22), Expect = 2.1
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                         
Query: 1056  gatgcctgtccaattgcatttggtggtctcactactctcaacataggcaatttcagattt 1115
             ||||| || |||| ||||||||||||||||||    ||||  ||||| ||| | ||||||
Sbjct: 72869 gatgcttgcccaactgcatttggtggtctcacacgcctcataatagggaatctaagattt 72810

                           
Query: 1116  ggtgaatcagacat 1129
             |||||||| |||||
Sbjct: 72809 ggtgaatcggacat 72796



to top

>ref|NM_001055114.1| Oryza sativa (japonica cultivar-group) Os02g0825100 (Os02g0825100)
            mRNA, complete cds
          Length = 2493

 Score = 58.0 bits (29), Expect = 1e-04
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 1591 ttcttgaagctgcacccttactgaaggagctat 1623
            ||||||||||||||||||| |||||||||||||
Sbjct: 2069 ttcttgaagctgcacccttcctgaaggagctat 2101



to top

>ref|NM_001055124.1| Oryza sativa (japonica cultivar-group) Os02g0826700 (Os02g0826700)
            mRNA, complete cds
          Length = 1353

 Score = 54.0 bits (27), Expect = 0.002
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                           
Query: 1578 tggacaatgtttattcttgaagctgcaccct 1608
            ||||||||||| |||||||||||||||||||
Sbjct: 910  tggacaatgttcattcttgaagctgcaccct 940



to top

>dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0452F04
          Length = 171421

 Score = 54.0 bits (27), Expect = 0.002
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                            
Query: 1578  tggacaatgtttattcttgaagctgcaccct 1608
             ||||||||||| |||||||||||||||||||
Sbjct: 69467 tggacaatgttcattcttgaagctgcaccct 69437



 Score = 44.1 bits (22), Expect = 2.1
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                           
Query: 1594  ttgaagctgcacccttactgaaggagctatacatgacagtctggga 1639
             |||||||||||||  | ||||||||||||| ||| ||||| |||||
Sbjct: 33528 ttgaagctgcacctgtcctgaaggagctatgcataacagtttggga 33483



to top

>ref|NM_001055118.1| Oryza sativa (japonica cultivar-group) Os02g0826000 (Os02g0826000)
            mRNA, complete cds
          Length = 2196

 Score = 44.1 bits (22), Expect = 2.1
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                          
Query: 1594 ttgaagctgcacccttactgaaggagctatacatgacagtctggga 1639
            |||||||||||||  | ||||||||||||| ||| ||||| |||||
Sbjct: 1775 ttgaagctgcacctgtcctgaaggagctatgcataacagtttggga 1820



to top

>ref|XM_711117.1| Candida albicans SC5314 hypothetical protein (CaO19_6369), mRNA
          Length = 1404

 Score = 44.1 bits (22), Expect = 2.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 997  ctgaaattgatgatgatgaaga 1018
            ||||||||||||||||||||||
Sbjct: 1175 ctgaaattgatgatgatgaaga 1196



to top

>ref|XM_711033.1| Candida albicans SC5314 hypothetical protein (CaO19_13726), mRNA
          Length = 1404

 Score = 44.1 bits (22), Expect = 2.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 997  ctgaaattgatgatgatgaaga 1018
            ||||||||||||||||||||||
Sbjct: 1175 ctgaaattgatgatgatgaaga 1196



to top

>ref|XM_647755.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
            (103.t00029) partial mRNA
          Length = 2586

 Score = 44.1 bits (22), Expect = 2.1
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 999  gaaattgatgatgatgaagaaa 1020
            ||||||||||||||||||||||
Sbjct: 2551 gaaattgatgatgatgaagaaa 2572



to top

>gb|CP000462.1| Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome
          Length = 4744448

 Score = 42.1 bits (21), Expect = 8.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 849     ggtgaacacaccatcgacctt 869
               |||||||||||||||||||||
Sbjct: 1273735 ggtgaacacaccatcgacctt 1273715



to top

>ref|XM_001122985.1| PREDICTED: Apis mellifera similar to Proliferating cell nuclear
            antigen (PCNA) (Cyclin) (Mutagen-sensitive 209 protein)
            (LOC727275), mRNA
          Length = 786

 Score = 42.1 bits (21), Expect = 8.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1000 aaattgatgatgatgaagaaa 1020
            |||||||||||||||||||||
Sbjct: 761  aaattgatgatgatgaagaaa 781



to top

>ref|XM_639916.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0167941)
            mRNA, complete cds
          Length = 864

 Score = 42.1 bits (21), Expect = 8.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1004 tgatgatgatgaagaaatggt 1024
            |||||||||||||||||||||
Sbjct: 354  tgatgatgatgaagaaatggt 374



to top

>ref|XM_639313.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0217459)
            mRNA, complete cds
          Length = 864

 Score = 42.1 bits (21), Expect = 8.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1004 tgatgatgatgaagaaatggt 1024
            |||||||||||||||||||||
Sbjct: 354  tgatgatgatgaagaaatggt 374



to top

>gb|AC146398.4| Pan troglodytes BAC clone RP43-54K1 from 7, complete sequence
          Length = 185645

 Score = 42.1 bits (21), Expect = 8.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 2120  attgaattcttataaagttat 2140
             |||||||||||||||||||||
Sbjct: 29591 attgaattcttataaagttat 29611



to top

>ref|XM_535270.2| PREDICTED: Canis familiaris similar to transportin 1 (LOC478093),
            mRNA
          Length = 2902

 Score = 42.1 bits (21), Expect = 8.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 987  gatgacgccgctgaaattgatgatgatga 1015
            ||||||| || ||||||||||||||||||
Sbjct: 1180 gatgacgacgatgaaattgatgatgatga 1208



to top

>gb|AY341029.1| Homo sapiens steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5
            alpha-steroid delta 4-dehydrogenase alpha 1) (SRD5A1)
            gene, complete cds
          Length = 38399

 Score = 42.1 bits (21), Expect = 8.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1730 tgatttccaacaccacagttt 1750
            |||||||||||||||||||||
Sbjct: 4259 tgatttccaacaccacagttt 4239



to top

>ref|XM_461892.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G08569g)
            partial mRNA
          Length = 2865

 Score = 42.1 bits (21), Expect = 8.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 2107 tgagtactgaatgattgaatt 2127
            |||||||||||||||||||||
Sbjct: 2066 tgagtactgaatgattgaatt 2046



to top

>gb|BC113111.1| Homo sapiens centromere protein J, mRNA (cDNA clone MGC:131582
           IMAGE:7961390), complete cds
          Length = 4331

 Score = 42.1 bits (21), Expect = 8.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 523 ggtgaccaatccttctcgggc 543
           |||||||||||||||||||||
Sbjct: 192 ggtgaccaatccttctcgggc 212



to top

>emb|AL359701.27| Human DNA sequence from clone RP5-876C12 on chromosome 1 Contains the
            3' end of the PDE4B gene for phosphodiesterase 4B,
            cAMP-specific (phosphodiesterase E4 dunce homolog,
            Drosophila), complete sequence
          Length = 78153

 Score = 42.1 bits (21), Expect = 8.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 2034 ttattaagagttatcattttctttt 2058
            |||||||||||| ||||||||||||
Sbjct: 5061 ttattaagagttttcattttctttt 5085



to top

>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces
              hansenii
          Length = 2051428

 Score = 42.1 bits (21), Expect = 8.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 2107   tgagtactgaatgattgaatt 2127
              |||||||||||||||||||||
Sbjct: 676535 tgagtactgaatgattgaatt 676515



to top

>gb|AC010366.6| Homo sapiens chromosome 5 clone CTD-2044J15, complete sequence
          Length = 115396

 Score = 42.1 bits (21), Expect = 8.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1730  tgatttccaacaccacagttt 1750
             |||||||||||||||||||||
Sbjct: 63635 tgatttccaacaccacagttt 63615



to top

>emb|AL596173.1| Listeria innocua Clip11262 complete genome, segment 11/12
          Length = 305050

 Score = 42.1 bits (21), Expect = 8.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 1001   aattgatgatgatgaagaaatggtcatct 1029
              ||||||||| ||| |||||||||||||||
Sbjct: 262967 aattgatgaggataaagaaatggtcatct 262939



to top

>gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4,
            complete sequence
          Length = 541399

 Score = 42.1 bits (21), Expect = 8.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1004 tgatgatgatgaagaaatggt 1024
            |||||||||||||||||||||
Sbjct: 7597 tgatgatgatgaagaaatggt 7577



to top

>emb|BX255915.13| Zebrafish DNA sequence from clone CH211-245L1 in linkage group 5,
            complete sequence
          Length = 157382

 Score = 42.1 bits (21), Expect = 8.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1786 attatgctgttaattatgtca 1806
            |||||||||||||||||||||
Sbjct: 8720 attatgctgttaattatgtca 8700



to top

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 8.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 985     aggatgacgccgctgaaattg 1005
               |||||||||||||||||||||
Sbjct: 3199873 aggatgacgccgctgaaattg 3199853


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 379,761,148
Number of extensions: 19256438
Number of successful extensions: 100155
Number of sequences better than 10.0: 32
Number of HSP's gapped: 100151
Number of HSP's successfully gapped: 49
Length of query: 2177
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 2154
Effective length of database: 18,503,978,556
Effective search space: 39857569809624
Effective search space used: 39857569809624
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)
to top