ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf74e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK241746.1| Oryza sativa (japonica cultivar-group) cDNA, clo... 72 1e-08
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-08
3emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4,... 72 1e-08
4gb|AY230323.1| Triticum aestivum mutant FCA-D1 (Fca) gene, compl... 54 0.003
5gb|AC091059.12| Homo sapiens chromosome 17, clone RP11-567L7, co... 46 0.68
6ref|XM_001018563.1| Tetrahymena thermophila SB210 hypothetical p... 44 2.7
7ref|XM_525325.2| PREDICTED: Pan troglodytes similar to Maf1 (LOC... 44 2.7
8gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 44 2.7
9gb|CP000087.1| Rickettsia bellii RML369-C, complete genome 44 2.7
10ref|NM_005461.3| Homo sapiens v-maf musculoaponeurotic fibrosarc... 44 2.7
11gb|AC116412.19| Mus musculus chromosome 5, clone RP24-82A20, com... 44 2.7
12gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome... 44 2.7
13gb|AC154620.2| Mus musculus BAC clone RP23-323M20 from chromosom... 44 2.7
14gb|BC036689.1| Homo sapiens v-maf musculoaponeurotic fibrosarcom... 44 2.7
15gb|AC111162.5| Homo sapiens chromosome 11, clone RP11-75L18, com... 44 2.7
16emb|Z71265.1|CEM05B5 Caenorhabditis elegans Cosmid M05B5, comple... 44 2.7
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 2.7
18emb|AL353810.9| Human DNA sequence from clone RP11-261H15 on chr... 44 2.7
19emb|AL035665.32|HS644L1 Human DNA sequence from clone RP4-644L1 ... 44 2.7
20gb|AC013604.9|AC013604 Homo sapiens, clone RP11-10E14, complete ... 44 2.7
21emb|AL512589.4| Mouse DNA sequence from clone RP23-431C3 on chro... 44 2.7
22emb|CR611755.1| full-length cDNA clone CS0DI019YB12 of Placenta ... 44 2.7
23gb|AF134157.1|AF134157 Homo sapiens MAFB/Kreisler basic region/l... 44 2.7
24gb|AC161507.2| Mus musculus chromosome 5, clone RP23-76L18, comp... 44 2.7

>dbj|AK241746.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065202E13, full
            insert sequence
          Length = 3596
 Score = 71.9 bits (36), Expect = 1e-08
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                
Query: 1333 ctggatattgcttgtattataatagaaggtaaacttaccaaacgaacagagg 1384
            ||||| |||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct: 497  ctggagattgcttgtattataacagacggtaaacttaccaaacgaatagagg 548



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 71.9 bits (36), Expect = 1e-08
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                    
Query: 1333     ctggatattgcttgtattataatagaaggtaaacttaccaaacgaacagagg 1384
                ||||| |||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct: 13666815 ctggagattgcttgtattataacagacggtaaacttaccaaacgaatagagg 13666764



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>emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079M09,
             complete sequence
          Length = 187359

 Score = 71.9 bits (36), Expect = 1e-08
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                 
Query: 1333  ctggatattgcttgtattataatagaaggtaaacttaccaaacgaacagagg 1384
             ||||| |||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct: 61423 ctggagattgcttgtattataacagacggtaaacttaccaaacgaatagagg 61372



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>gb|AY230323.1| Triticum aestivum mutant FCA-D1 (Fca) gene, complete cds
          Length = 10360

 Score = 54.0 bits (27), Expect = 0.003
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                           
Query: 665  taaagtgtgggttaagatctaatttctccat 695
            ||||||| |||||||||||||||||||||||
Sbjct: 1403 taaagtgcgggttaagatctaatttctccat 1433



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>gb|AC091059.12| Homo sapiens chromosome 17, clone RP11-567L7, complete sequence
          Length = 179084

 Score = 46.1 bits (23), Expect = 0.68
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 463   taagcatttcttgtttgtattaa 485
             |||||||||||||||||||||||
Sbjct: 90155 taagcatttcttgtttgtattaa 90177



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>ref|XM_001018563.1| Tetrahymena thermophila SB210 hypothetical protein (TTHERM_00285490)
            mRNA, complete cds
          Length = 4773

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 446  aattttatgtgcaactgtaagcattt 471
            |||||||| |||||||||||||||||
Sbjct: 4179 aattttatctgcaactgtaagcattt 4154



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>ref|XM_525325.2| PREDICTED: Pan troglodytes similar to Maf1 (LOC469941), mRNA
          Length = 2740

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 1116 gttgttttctgatgcaaaatgc 1137
            ||||||||||||||||||||||
Sbjct: 1672 gttgttttctgatgcaaaatgc 1651



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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 317     cgttcttcctgctgctggtcac 338
               ||||||||||||||||||||||
Sbjct: 3078875 cgttcttcctgctgctggtcac 3078896



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>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome
          Length = 1522076

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 2035   ttcaaaataatcattttaaaga 2056
              ||||||||||||||||||||||
Sbjct: 233255 ttcaaaataatcattttaaaga 233234



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>ref|NM_005461.3| Homo sapiens v-maf musculoaponeurotic fibrosarcoma oncogene homolog B
            (avian) (MAFB), mRNA
          Length = 3378

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 1116 gttgttttctgatgcaaaatgc 1137
            ||||||||||||||||||||||
Sbjct: 2322 gttgttttctgatgcaaaatgc 2301



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>gb|AC116412.19| Mus musculus chromosome 5, clone RP24-82A20, complete sequence
          Length = 191823

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 868    aatatttgggagactgtgactaatat 893
              ||||||||||||||| ||||||||||
Sbjct: 141749 aatatttgggagactttgactaatat 141724



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>gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019B24,
              complete sequence
          Length = 162385

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 1709   attgttaatttgcctgcgtctgccttgcaa 1738
              ||||||||||||||||| |||||| |||||
Sbjct: 149753 attgttaatttgcctgcttctgccgtgcaa 149782



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>gb|AC154620.2| Mus musculus BAC clone RP23-323M20 from chromosome 13, complete
             sequence
          Length = 193801

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 31/33 (93%), Gaps = 2/33 (6%)
 Strand = Plus / Minus

                                              
Query: 1923  atatgtcttctctcacactgtccacatgttcct 1955
             ||||||||||||||||  |||||||||||||||
Sbjct: 65530 atatgtcttctctcac--tgtccacatgttcct 65500



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>gb|BC036689.1| Homo sapiens v-maf musculoaponeurotic fibrosarcoma oncogene homolog B
            (avian), mRNA (cDNA clone MGC:43127 IMAGE:5261053),
            complete cds
          Length = 3370

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 1116 gttgttttctgatgcaaaatgc 1137
            ||||||||||||||||||||||
Sbjct: 2328 gttgttttctgatgcaaaatgc 2307



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>gb|AC111162.5| Homo sapiens chromosome 11, clone RP11-75L18, complete sequence
          Length = 119944

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 643   ggcaaatgatcaaagtgaaaag 664
             ||||||||||||||||||||||
Sbjct: 59910 ggcaaatgatcaaagtgaaaag 59889



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>emb|Z71265.1|CEM05B5 Caenorhabditis elegans Cosmid M05B5, complete sequence
          Length = 19144

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 2028 ttttgagttcaaaataatcatt 2049
            ||||||||||||||||||||||
Sbjct: 798  ttttgagttcaaaataatcatt 777



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11
          Length = 28386948

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 1709    attgttaatttgcctgcgtctgccttgcaa 1738
               ||||||||||||||||| |||||| |||||
Sbjct: 1635217 attgttaatttgcctgcttctgccgtgcaa 1635246



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>emb|AL353810.9| Human DNA sequence from clone RP11-261H15 on chromosome 9, complete
             sequence
          Length = 111330

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 2052  aaagatgtggagtaattggcaaagat 2077
             |||||||||||| |||||||||||||
Sbjct: 38690 aaagatgtggagaaattggcaaagat 38665



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>emb|AL035665.32|HS644L1 Human DNA sequence from clone RP4-644L1 on chromosome 20q12 Contains
             the MAFB gene for v-maf musculoaponeurotic fibrosarcoma
             oncogene homolog B (avian), a novel gene and two CpG
             islands, complete sequence
          Length = 145593

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 1116  gttgttttctgatgcaaaatgc 1137
             ||||||||||||||||||||||
Sbjct: 91104 gttgttttctgatgcaaaatgc 91125



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>gb|AC013604.9|AC013604 Homo sapiens, clone RP11-10E14, complete sequence
          Length = 167236

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 2035  ttcaaaataatcattttaaaga 2056
             ||||||||||||||||||||||
Sbjct: 49450 ttcaaaataatcattttaaaga 49429



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>emb|AL512589.4| Mouse DNA sequence from clone RP23-431C3 on chromosome 2, complete
              sequence
          Length = 170352

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 1384   gaagttttaaaacagagtattg 1405
              ||||||||||||||||||||||
Sbjct: 137830 gaagttttaaaacagagtattg 137851



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>emb|CR611755.1| full-length cDNA clone CS0DI019YB12 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1180

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 1116 gttgttttctgatgcaaaatgc 1137
            ||||||||||||||||||||||
Sbjct: 232  gttgttttctgatgcaaaatgc 211



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>gb|AF134157.1|AF134157 Homo sapiens MAFB/Kreisler basic region/leucine zipper transcription
            factor (MAFB) mRNA, complete cds
          Length = 3071

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 1116 gttgttttctgatgcaaaatgc 1137
            ||||||||||||||||||||||
Sbjct: 2015 gttgttttctgatgcaaaatgc 1994



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>gb|AC161507.2| Mus musculus chromosome 5, clone RP23-76L18, complete sequence
          Length = 262831

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 656    agtgaaaagtaaagtgtgggtt 677
              ||||||||||||||||||||||
Sbjct: 199961 agtgaaaagtaaagtgtgggtt 199940


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 611,207,142
Number of extensions: 35457805
Number of successful extensions: 200122
Number of sequences better than 10.0: 24
Number of HSP's gapped: 200121
Number of HSP's successfully gapped: 24
Length of query: 2788
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 2765
Effective length of database: 18,503,978,556
Effective search space: 51163500707340
Effective search space used: 51163500707340
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)
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