ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf77d24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q4WMU5:PTPA1_ASPFU Serine/threonine-protein phosphatase 2A activ... 32 6.6
2P0C0F6:RPFC_XANCP Sensory/regulatory protein rpfC - Xanthomonas ... 32 6.6
3P0C0F7:RPFC_XANC8 Sensory/regulatory protein rpfC - Xanthomonas ... 32 6.6

>Q4WMU5:PTPA1_ASPFU Serine/threonine-protein phosphatase 2A activator 1 - Aspergillus|
           fumigatus (Sartorya fumigata)
          Length = 473
 Score = 32.3 bits (72), Expect = 6.6
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +3

Query: 357 GAVPCLPPENCPNGWATPPGDTFMVRGPEYFATKAKIPGGEYLLKPLGVDWIK 515
           G  P  PP + P+    PPG     R P   ++  + PGG+    P    W K
Sbjct: 421 GCTPGKPPTSLPDTSRLPPGPMAPTRAPWAASSTGQAPGGDPTHVPTKAPWAK 473



to top

>P0C0F6:RPFC_XANCP Sensory/regulatory protein rpfC - Xanthomonas campestris pv.|
            campestris
          Length = 677

 Score = 32.3 bits (72), Expect = 6.6
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = -1

Query: 1162 GSIELPGFCSSWEKLR---HSLEG---RIGATSCCSSDGTSYTPADPGLNSE 1025
            G IE  G CS WE+LR   H+L G    +G     SS G     AD  L +E
Sbjct: 589  GDIERDGTCSDWEQLRESAHALRGVASNLGLAQVASSGGELMRMADWQLQAE 640



to top

>P0C0F7:RPFC_XANC8 Sensory/regulatory protein rpfC - Xanthomonas campestris pv.|
            campestris (strain 8004)
          Length = 677

 Score = 32.3 bits (72), Expect = 6.6
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = -1

Query: 1162 GSIELPGFCSSWEKLR---HSLEG---RIGATSCCSSDGTSYTPADPGLNSE 1025
            G IE  G CS WE+LR   H+L G    +G     SS G     AD  L +E
Sbjct: 589  GDIERDGTCSDWEQLRESAHALRGVASNLGLAQVASSGGELMRMADWQLQAE 640


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 337,197,503
Number of extensions: 7847452
Number of successful extensions: 18846
Number of sequences better than 10.0: 3
Number of HSP's gapped: 18843
Number of HSP's successfully gapped: 3
Length of query: 598
Length of database: 100,686,439
Length adjustment: 119
Effective length of query: 479
Effective length of database: 68,045,334
Effective search space: 32593714986
Effective search space used: 32593714986
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top