ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf82n11 |
|---|---|
| Clone Library Name | barley_pub |
>P27347:MNB1B_MAIZE DNA-binding protein MNB1B - Zea mays (Maize)| Length = 157 Score = 58.5 bits (140), Expect = 3e-08 Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 7/85 (8%) Frame = +3 Query: 153 SKANGDAAFKASGKSKTATG--GVA-----KPKRAPTPFFVFLAEFRPQYMEKHPXXXXX 311 +KA+ A K+ G K A G G A KPKRAP+ FFVF+ EFR ++ EK+P Sbjct: 10 AKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSV 69 Query: 312 XXXXXXXXXKWRSMSDEEKAKYGGK 386 +W+S+S+ +KA Y K Sbjct: 70 AAVGKAAGDRWKSLSESDKAPYVAK 94
>P40621:HMGL_WHEAT HMG1/2-like protein - Triticum aestivum (Wheat)| Length = 161 Score = 58.2 bits (139), Expect = 4e-08 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 8/86 (9%) Frame = +3 Query: 153 SKANGDAAFKASGKSKTATGGVA--------KPKRAPTPFFVFLAEFRPQYMEKHPXXXX 308 +KA+ A K+ G K A G KPKRAP+ FFVF+ EFR ++ +K+P Sbjct: 10 AKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKS 69 Query: 309 XXXXXXXXXXKWRSMSDEEKAKYGGK 386 +W+S+S+ EKA Y K Sbjct: 70 VAAVGKAAGERWKSLSESEKAPYVAK 95
>P26585:HMGL_SOYBN HMG1/2-like protein - Glycine max (Soybean)| Length = 152 Score = 55.8 bits (133), Expect = 2e-07 Identities = 31/80 (38%), Positives = 40/80 (50%) Frame = +3 Query: 147 MRSKANGDAAFKASGKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXX 326 + K A K +GK K A KPKR P+ FFVF+ EFR + ++HP Sbjct: 19 VNKKGAATKARKPAGKGKAAKDP-NKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGK 77 Query: 327 XXXXKWRSMSDEEKAKYGGK 386 KW++MSD EKA Y K Sbjct: 78 AAGAKWKTMSDAEKAPYVAK 97
>P40620:HMGL_VICFA HMG1/2-like protein - Vicia faba (Broad bean)| Length = 149 Score = 55.5 bits (132), Expect = 3e-07 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Frame = +3 Query: 162 NGDAAFKASGKSKTATGGVAK----PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXX 329 N A G K A G K PKR P+ FFVF+A+FR QY + HP Sbjct: 20 NKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKA 79 Query: 330 XXXKWRSMSDEEKAKY 377 +W+S+S+EEKA Y Sbjct: 80 CGEEWKSLSEEEKAPY 95
>P40619:HMGL_IPONI HMG1/2-like protein - Ipomoea nil (Japanese morning glory)| (Pharbitis nil) Length = 144 Score = 51.2 bits (121), Expect = 5e-06 Identities = 25/65 (38%), Positives = 33/65 (50%) Frame = +3 Query: 192 KSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEKA 371 K+K A KPKR P+ FFVF+ +FR Y EKHP KW+ ++ EKA Sbjct: 25 KTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKA 84 Query: 372 KYGGK 386 + K Sbjct: 85 PFISK 89
>P40618:HMGB3_CHICK High mobility group protein B3 - Gallus gallus (Chicken)| Length = 202 Score = 40.0 bits (92), Expect = 0.012 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Frame = +3 Query: 156 KANGDAAFKASGKSKTATGGVAK-----PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXX 320 K D K G +K GG K PKR P+ FF+F +EFRP+ +P Sbjct: 68 KVRYDREMKDYGPAK---GGKKKKDPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDV 123 Query: 321 XXXXXXKWRSMSDEEKAKYGGKKA 392 W ++SD EK Y K A Sbjct: 124 AKKLGEMWNNLSDGEKQPYNNKAA 147
>P36194:HMGB1_CHICK High mobility group protein B1 - Gallus gallus (Chicken)| Length = 201 Score = 39.7 bits (91), Expect = 0.015 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Frame = +3 Query: 156 KANGDAAFKASGKSKTATGGVAK-----PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXX 320 K D K G +K GG K PKR P+ FF+F +EFRP+ +P Sbjct: 67 KVRYDREMKDYGPAK---GGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDV 122 Query: 321 XXXXXXKWRSMSDEEKAKYGGKKA 392 W ++SD EK Y K A Sbjct: 123 AKKLGEMWNNLSDGEKQPYNNKAA 146
>Q32L31:HMGB3_BOVIN High mobility group protein B3 - Bos taurus (Bovine)| Length = 200 Score = 38.9 bits (89), Expect = 0.026 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Frame = +3 Query: 156 KANGDAAFKASGKSKTATGGVAK-----PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXX 320 K D K G +K GG K PKR P+ FF+F +EFRP+ +P Sbjct: 68 KVRYDREMKDYGPAK---GGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDV 123 Query: 321 XXXXXXKWRSMSDEEKAKYGGKKA 392 W ++SD EK Y K A Sbjct: 124 AKKLGEMWNNLSDSEKQPYINKAA 147
>O54879:HMGB3_MOUSE High mobility group protein B3 - Mus musculus (Mouse)| Length = 200 Score = 38.5 bits (88), Expect = 0.034 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Frame = +3 Query: 156 KANGDAAFKASGKSKTATGGVAK-----PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXX 320 K D K G +K GG K PKR P+ FF+F +EFRP+ +P Sbjct: 68 KVRYDREMKDYGPAK---GGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDV 123 Query: 321 XXXXXXKWRSMSDEEKAKYGGKKA 392 W ++SD EK Y K A Sbjct: 124 AKKLGEMWNNLSDNEKQPYVTKAA 147
>O15347:HMGB3_HUMAN High mobility group protein B3 - Homo sapiens (Human)| Length = 200 Score = 37.0 bits (84), Expect = 0.10 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Frame = +3 Query: 156 KANGDAAFKASGKSKTATGGVAK-----PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXX 320 K D K G +K GG K PKR P+ FF+F +EFRP+ +P Sbjct: 68 KVRYDREMKDYGPAK---GGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDV 123 Query: 321 XXXXXXKWRSMSDEEKAKYGGKKA 392 W +++D EK Y K A Sbjct: 124 AKKLGEMWNNLNDSEKQPYITKAA 147
>P25977:UBF1_RAT Nucleolar transcription factor 1 - Rattus norvegicus (Rat)| Length = 764 Score = 36.6 bits (83), Expect = 0.13 Identities = 20/61 (32%), Positives = 29/61 (47%) Frame = +3 Query: 210 GGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEKAKYGGKK 389 GG KPKR + F+F E R Q E+ P W +S+++KAKY ++ Sbjct: 402 GGSEKPKRPVSAMFIFSEEKRRQLQEERP-ELSESELTRLLARMWNDLSEKKKAKYKARE 460 Query: 390 A 392 A Sbjct: 461 A 461
>P17480:UBF1_HUMAN Nucleolar transcription factor 1 - Homo sapiens (Human)| Length = 764 Score = 36.6 bits (83), Expect = 0.13 Identities = 20/61 (32%), Positives = 29/61 (47%) Frame = +3 Query: 210 GGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEKAKYGGKK 389 GG KPKR + F+F E R Q E+ P W +S+++KAKY ++ Sbjct: 402 GGSEKPKRPVSAMFIFSEEKRRQLQEERP-ELSESELTRLLARMWNDLSEKKKAKYKARE 460 Query: 390 A 392 A Sbjct: 461 A 461
>P25976:UBF1_MOUSE Nucleolar transcription factor 1 - Mus musculus (Mouse)| Length = 765 Score = 35.4 bits (80), Expect = 0.29 Identities = 19/61 (31%), Positives = 29/61 (47%) Frame = +3 Query: 210 GGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEKAKYGGKK 389 GG KPKR + F+F E R Q E+ P W +++++KAKY ++ Sbjct: 402 GGSEKPKRPVSAMFIFSEEKRRQLQEERP-ELSESELTRLLARMWNDLTEKKKAKYKARE 460 Query: 390 A 392 A Sbjct: 461 A 461
>P07746:HMGT_ONCMY High mobility group-T protein - Oncorhynchus mykiss (Rainbow trout)| (Salmo gairdneri) Length = 204 Score = 34.7 bits (78), Expect = 0.50 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = +3 Query: 225 PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEKAKYGGK 386 PKR + FF+F A+FRPQ + P KW +++ E+K Y K Sbjct: 94 PKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKK 146
>P63159:HMGB1_RAT High mobility group protein B1 - Rattus norvegicus (Rat)| Length = 215 Score = 34.7 bits (78), Expect = 0.50 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = +3 Query: 189 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEK 368 G++K PKR P+ FF+F +E+RP+ +HP W + + ++K Sbjct: 83 GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 141 Query: 369 AKYGGKKA 392 Y K A Sbjct: 142 QPYEKKAA 149
>P63158:HMGB1_MOUSE High mobility group protein B1 - Mus musculus (Mouse)| Length = 215 Score = 34.7 bits (78), Expect = 0.50 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = +3 Query: 189 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEK 368 G++K PKR P+ FF+F +E+RP+ +HP W + + ++K Sbjct: 83 GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 141 Query: 369 AKYGGKKA 392 Y K A Sbjct: 142 QPYEKKAA 149
>Q4R844:HMGB1_MACFA High mobility group protein B1 - Macaca fascicularis (Crab eating| macaque) (Cynomolgus monkey) Length = 215 Score = 34.7 bits (78), Expect = 0.50 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = +3 Query: 189 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEK 368 G++K PKR P+ FF+F +E+RP+ +HP W + + ++K Sbjct: 83 GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 141 Query: 369 AKYGGKKA 392 Y K A Sbjct: 142 QPYEKKAA 149
>P09429:HMGB1_HUMAN High mobility group protein B1 - Homo sapiens (Human)| Length = 215 Score = 34.7 bits (78), Expect = 0.50 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = +3 Query: 189 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEK 368 G++K PKR P+ FF+F +E+RP+ +HP W + + ++K Sbjct: 83 GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 141 Query: 369 AKYGGKKA 392 Y K A Sbjct: 142 QPYEKKAA 149
>Q08IE6:HMGB1_HORSE High mobility group protein B1 - Equus caballus (Horse)| Length = 215 Score = 34.7 bits (78), Expect = 0.50 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = +3 Query: 189 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEK 368 G++K PKR P+ FF+F +E+RP+ +HP W + + ++K Sbjct: 83 GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 141 Query: 369 AKYGGKKA 392 Y K A Sbjct: 142 QPYEKKAA 149
>P07156:HMGB1_CRIGR High mobility group protein B1 - Cricetulus griseus (Chinese| hamster) Length = 180 Score = 34.7 bits (78), Expect = 0.50 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = +3 Query: 189 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEK 368 G++K PKR P+ FF+F +E+RP+ +HP W + + ++K Sbjct: 48 GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 106 Query: 369 AKYGGKKA 392 Y K A Sbjct: 107 QPYEKKAA 114
>Q6YKA4:HMGB1_CANFA High mobility group protein B1 - Canis familiaris (Dog)| Length = 215 Score = 34.7 bits (78), Expect = 0.50 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = +3 Query: 189 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEK 368 G++K PKR P+ FF+F +E+RP+ +HP W + + ++K Sbjct: 83 GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 141 Query: 369 AKYGGKKA 392 Y K A Sbjct: 142 QPYEKKAA 149
>P10103:HMGB1_BOVIN High mobility group protein B1 - Bos taurus (Bovine)| Length = 215 Score = 34.7 bits (78), Expect = 0.50 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = +3 Query: 189 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEK 368 G++K PKR P+ FF+F +E+RP+ +HP W + + ++K Sbjct: 83 GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 141 Query: 369 AKYGGKKA 392 Y K A Sbjct: 142 QPYEKKAA 149
>P12682:HMGB1_PIG High mobility group protein B1 - Sus scrofa (Pig)| Length = 215 Score = 34.3 bits (77), Expect = 0.65 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = +3 Query: 189 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEK 368 G++K PKR P+ FF+F +E+RP+ +HP W + + ++K Sbjct: 83 GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 141 Query: 369 AKYGGKKA 392 Y K A Sbjct: 142 HPYEKKAA 149
>P52925:HMGB2_RAT High mobility group protein B2 - Rattus norvegicus (Rat)| Length = 210 Score = 33.9 bits (76), Expect = 0.85 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = +3 Query: 225 PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEKAKYGGKKA 392 PKR P+ FF+F +E RP+ +HP W S ++K Y K A Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
>P17741:HMGB2_PIG High mobility group protein B2 - Sus scrofa (Pig)| Length = 210 Score = 33.9 bits (76), Expect = 0.85 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = +3 Query: 225 PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEKAKYGGKKA 392 PKR P+ FF+F +E RP+ +HP W S ++K Y K A Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
>P26583:HMGB2_HUMAN High mobility group protein B2 - Homo sapiens (Human)| Length = 209 Score = 33.9 bits (76), Expect = 0.85 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = +3 Query: 225 PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEKAKYGGKKA 392 PKR P+ FF+F +E RP+ +HP W S ++K Y K A Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
>P40673:HMGB2_BOVIN High mobility group protein B2 - Bos taurus (Bovine)| Length = 209 Score = 33.9 bits (76), Expect = 0.85 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = +3 Query: 225 PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEKAKYGGKKA 392 PKR P+ FF+F +E RP+ +HP W S ++K Y K A Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
>Q7S045:NHP6_NEUCR Nonhistone chromosomal protein 6 - Neurospora crassa| Length = 103 Score = 33.5 bits (75), Expect = 1.1 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 9/80 (11%) Frame = +3 Query: 180 KASGKSKTATGGVAK---------PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXX 332 KA+ KSKT TG V K PKR + + F E R E++P Sbjct: 3 KAAAKSKT-TGKVEKRRAKKDPNAPKRGLSAYMFFANEQRENVREENPGVSFGQVGKILG 61 Query: 333 XXKWRSMSDEEKAKYGGKKA 392 +W+++SD+++A Y K A Sbjct: 62 E-RWKALSDKQRAPYEAKAA 80
>Q9N1Q5:SP100_HYLLA Nuclear autoantigen Sp-100 - Hylobates lar (Common gibbon)| Length = 242 Score = 33.1 bits (74), Expect = 1.4 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +3 Query: 183 ASGKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHP 296 + G+ K PKR P FF+F +E+RP+ +HP Sbjct: 129 SKGEKKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHP 166
>Q3SYE8:HMG4L_HUMAN High mobility group protein B3-like - Homo sapiens (Human)| Length = 130 Score = 33.1 bits (74), Expect = 1.4 Identities = 22/79 (27%), Positives = 32/79 (40%) Frame = +3 Query: 156 KANGDAAFKASGKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXX 335 K + D K G +K PKR + FF+F +EF P+ +P Sbjct: 6 KVHCDREMKDYGPAKGGKNDPNAPKRPLSGFFLFCSEFCPKIKSTNP-GISIGDVAKKLG 64 Query: 336 XKWRSMSDEEKAKYGGKKA 392 W +++D EK Y K A Sbjct: 65 EMWNNLNDSEKQPYVTKVA 83
>Q9N1Q7:SP100_PANTR Nuclear autoantigen Sp-100 - Pan troglodytes (Chimpanzee)| Length = 215 Score = 32.7 bits (73), Expect = 1.9 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +3 Query: 225 PKRAPTPFFVFLAEFRPQYMEKHP 296 PKR P FF+F +E+RP+ +HP Sbjct: 124 PKRPPLAFFLFCSEYRPKIKGEHP 147
>P23497:SP100_HUMAN Nuclear autoantigen Sp-100 - Homo sapiens (Human)| Length = 879 Score = 32.7 bits (73), Expect = 1.9 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +3 Query: 225 PKRAPTPFFVFLAEFRPQYMEKHP 296 PKR P FF+F +E+RP+ +HP Sbjct: 769 PKRPPLAFFLFCSEYRPKIKGEHP 792
>Q9N1Q6:SP100_GORGO Nuclear autoantigen Sp-100 - Gorilla gorilla gorilla (Lowland| gorilla) Length = 225 Score = 32.7 bits (73), Expect = 1.9 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +3 Query: 225 PKRAPTPFFVFLAEFRPQYMEKHP 296 PKR P FF+F +E+RP+ +HP Sbjct: 118 PKRPPLAFFLFCSEYRPKIKGEHP 141
>Q9UGV6:HMG1X_HUMAN High mobility group protein 1-like 10 - Homo sapiens (Human)| Length = 211 Score = 32.7 bits (73), Expect = 1.9 Identities = 18/68 (26%), Positives = 30/68 (44%) Frame = +3 Query: 189 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEK 368 G++K PKR P+ FF+F + +RP+ +HP W + + ++K Sbjct: 83 GETKKKFKDPNAPKRTPSAFFLFCSAYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 141 Query: 369 AKYGGKKA 392 Y K A Sbjct: 142 QPYEKKAA 149
>Q32L34:HMGB4_BOVIN High mobility group protein B4 - Bos taurus (Bovine)| Length = 194 Score = 32.3 bits (72), Expect = 2.5 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = +3 Query: 222 KPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXX-KWRSMSDEEKAKY 377 KPK + + FL +R ++ E+ P KWRS+S EKAKY Sbjct: 8 KPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKY 60
>Q8WW32:HMGB4_HUMAN High mobility group protein B4 - Homo sapiens (Human)| Length = 186 Score = 32.0 bits (71), Expect = 3.2 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = +3 Query: 222 KPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXX-KWRSMSDEEKAKY 377 KPK + + FL +R ++ E+ P KWRS+S EKAKY Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPSTYVGFKEFSRKCSEKWRSISKHEKAKY 60
>P30681:HMGB2_MOUSE High mobility group protein B2 - Mus musculus (Mouse)| Length = 210 Score = 32.0 bits (71), Expect = 3.2 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = +3 Query: 225 PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMSDEEKAKYGGKKA 392 PKR P+ FF+F +E RP+ +HP W S ++K Y K A Sbjct: 95 PKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 149
>P26584:HMGB2_CHICK High mobility group protein B2 - Gallus gallus (Chicken)| Length = 207 Score = 32.0 bits (71), Expect = 3.2 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +3 Query: 225 PKRAPTPFFVFLAEFRPQYMEKHP 296 PKR P+ FF+F +E RP+ HP Sbjct: 95 PKRPPSAFFLFCSEHRPKIKNDHP 118
>Q6P8W9:HMGB4_MOUSE High mobility group protein B4 - Mus musculus (Mouse)| Length = 181 Score = 30.8 bits (68), Expect = 7.2 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = +3 Query: 222 KPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXX-KWRSMSDEEKAKY 377 +PK + + F+ FR ++ E+ P KWRS+S EKAKY Sbjct: 8 RPKVNVSSYIHFMLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKY 60
>P27578:COAT_BYDVN Coat protein - Barley yellow dwarf virus (isolate NY-RPV) (BYDV)| Length = 204 Score = 30.8 bits (68), Expect = 7.2 Identities = 18/38 (47%), Positives = 21/38 (55%) Frame = +2 Query: 200 DGHRRRRQAEARPDPLLRLPG*VQAAVHGEAPRGKGRR 313 +G RRRRQ AR P R V A +G A RG+ RR Sbjct: 11 NGSRRRRQRVARRRPAARTQPVVVVASNGPARRGRRRR 48
>Q5B995:NHP6_EMENI Nonhistone chromosomal protein 6 - Emericella nidulans (Aspergillus| nidulans) Length = 106 Score = 30.4 bits (67), Expect = 9.4 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Frame = +3 Query: 192 KSKTATGGVAK-----PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXXKWRSMS 356 K+ TGG K PKR + + F + R + E++P KW+S+S Sbjct: 11 KATRETGGRKKKDPNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLGE-KWKSLS 69 Query: 357 DEEKAKYGGKKA 392 D+E+ Y K A Sbjct: 70 DKERKPYEDKAA 81 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 100,121,915 Number of extensions: 1653402 Number of successful extensions: 3991 Number of sequences better than 10.0: 41 Number of HSP's gapped: 3971 Number of HSP's successfully gapped: 41 Length of query: 286 Length of database: 100,686,439 Length adjustment: 112 Effective length of query: 174 Effective length of database: 69,965,399 Effective search space: 12173979426 Effective search space used: 12173979426 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
