| Clone Name | FLbaf76p19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001071534.1| Oryza sativa (japonica cultivar-group) Os10g0503600 (Os10g0503600) mRNA, complete cds Length = 1167 Score = 567 bits (286), Expect = e-158 Identities = 622/734 (84%) Strand = Plus / Plus Query: 147 agcaccagcaccttcgtcatcaggtggatcaacttcctcaccatgatactggcgatactt 206 ||||| ||| |||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct: 181 agcacaagcgccttcgtcatcaggtggatcaacttcttcaccatgatactggcactactg 240 Query: 207 gtggtgggttttgggttctggatgagcacccacaatgacgagtgccgacggtcactcacg 266 |||||||| || ||||||||||||||||||||||| ||||| ||| | ||||| | ||| Sbjct: 241 gtggtggggttcgggttctggatgagcacccacaacgacgaatgcaggcggtccttgacg 300 Query: 267 atccctgtcatggcccttggaggagtaatttttctcatatcgctggcgggattcgtgggt 326 ||||||||||||| ||||||||||||||||| ||||||||||| | ||| || | ||| Sbjct: 301 atccctgtcatgggtcttggaggagtaattttcctcatatcgctcgtggggtttcttggt 360 Query: 327 gcttggaagaacatttcctgcttgctttggacatatctaatcatgctgttcgtggtcctg 386 ||||||||||| ||| | |||||||| ||||||||||| | |||||||||||||| || Sbjct: 361 gcttggaagaaaattgcttgcttgctatggacatatctggtaatgctgttcgtggttttg 420 Query: 387 gtggcaatcatggtcttcacagtgcttgcgtttatcattacaaatactggaactggtcat 446 |||||||||||||| |||||||||||||||||||| || |||||||| |||||||| ||| Sbjct: 421 gtggcaatcatggtgttcacagtgcttgcgtttattatcacaaataccggaactggccat 480 Query: 447 gctgttgctgggtccaaatataaagagtatcgtcttcaggactacagctcttggttcgtc 506 |||| ||||| | ||| |||||||||||||| ||||| || ||||||||||| || Sbjct: 481 tctgtctctggggtgagatacaaagagtatcgtctgcaggattatagctcttggtttatc 540 Query: 507 aaacagctcaatgacactgataaatggattcatctgagaagttgccttgtgaagtcggat 566 |||||||| ||||||||||| ||||||| ||| |||||||| || |||||||| || ||| Sbjct: 541 aaacagctgaatgacactgaaaaatggactcacctgagaagctgtcttgtgaaatcagat 600 Query: 567 gattgcaatagcttgtcgaaaagatataagactctaaaacaatacaagcttgctgatctg 626 ||||| ||| ||||||| | |||||| |||||||| ||||||||||||||||| ||||| Sbjct: 601 gattgtaatggcttgtcaagaagatacaagactctgaaacaatacaagcttgcagatctt 660 Query: 627 actcccattgagtctggctgttgccgcccaccagcggagtgtggatatccagctttgaat 686 ||||| || |||||||| || ||||| ||||| || ||||| || || |||||| | || Sbjct: 661 actcctatggagtctggttgctgccgtccaccggcagagtgcgggtacccagctgtaaac 720 Query: 687 gcttccacttttgatttgagctatcatccggtgagcacaaacgtcgactgcaaactctac 746 |||||| |||||||||||||||||||| || ||||| || |||||||||||||| ||| Sbjct: 721 gcttcctactttgatttgagctatcatccagtcagcacgaatgtcgactgcaaactgtac 780 Query: 747 aaaaatgatcggtccctcaggtgctatgactgtaattcttgcaaagctggggttgcgcaa 806 ||||| | || || | ||||||||| ||| |||||||||||||||||||||| ||| Sbjct: 781 aaaaacgcacgctctgttctgtgctatgattgtgattcttgcaaagctggggttgctcaa 840 Query: 807 tacatgaagacagagtggcgggtggttgccatcttcaatgtggtattgtttgttattttg 866 |||||||| ||||||||| ||||||| |||||||| || || || ||||||| || ||| Sbjct: 841 tacatgaaaacagagtggagggtggtagccatctttaacgtcatactgtttgtcatcttg 900 Query: 867 tcattcgtatactt 880 || ||||| ||||| Sbjct: 901 tctttcgtctactt 914
>dbj|AK103857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148O13, full insert sequence Length = 1168 Score = 567 bits (286), Expect = e-158 Identities = 622/734 (84%) Strand = Plus / Plus Query: 147 agcaccagcaccttcgtcatcaggtggatcaacttcctcaccatgatactggcgatactt 206 ||||| ||| |||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct: 182 agcacaagcgccttcgtcatcaggtggatcaacttcttcaccatgatactggcactactg 241 Query: 207 gtggtgggttttgggttctggatgagcacccacaatgacgagtgccgacggtcactcacg 266 |||||||| || ||||||||||||||||||||||| ||||| ||| | ||||| | ||| Sbjct: 242 gtggtggggttcgggttctggatgagcacccacaacgacgaatgcaggcggtccttgacg 301 Query: 267 atccctgtcatggcccttggaggagtaatttttctcatatcgctggcgggattcgtgggt 326 ||||||||||||| ||||||||||||||||| ||||||||||| | ||| || | ||| Sbjct: 302 atccctgtcatgggtcttggaggagtaattttcctcatatcgctcgtggggtttcttggt 361 Query: 327 gcttggaagaacatttcctgcttgctttggacatatctaatcatgctgttcgtggtcctg 386 ||||||||||| ||| | |||||||| ||||||||||| | |||||||||||||| || Sbjct: 362 gcttggaagaaaattgcttgcttgctatggacatatctggtaatgctgttcgtggttttg 421 Query: 387 gtggcaatcatggtcttcacagtgcttgcgtttatcattacaaatactggaactggtcat 446 |||||||||||||| |||||||||||||||||||| || |||||||| |||||||| ||| Sbjct: 422 gtggcaatcatggtgttcacagtgcttgcgtttattatcacaaataccggaactggccat 481 Query: 447 gctgttgctgggtccaaatataaagagtatcgtcttcaggactacagctcttggttcgtc 506 |||| ||||| | ||| |||||||||||||| ||||| || ||||||||||| || Sbjct: 482 tctgtctctggggtgagatacaaagagtatcgtctgcaggattatagctcttggtttatc 541 Query: 507 aaacagctcaatgacactgataaatggattcatctgagaagttgccttgtgaagtcggat 566 |||||||| ||||||||||| ||||||| ||| |||||||| || |||||||| || ||| Sbjct: 542 aaacagctgaatgacactgaaaaatggactcacctgagaagctgtcttgtgaaatcagat 601 Query: 567 gattgcaatagcttgtcgaaaagatataagactctaaaacaatacaagcttgctgatctg 626 ||||| ||| ||||||| | |||||| |||||||| ||||||||||||||||| ||||| Sbjct: 602 gattgtaatggcttgtcaagaagatacaagactctgaaacaatacaagcttgcagatctt 661 Query: 627 actcccattgagtctggctgttgccgcccaccagcggagtgtggatatccagctttgaat 686 ||||| || |||||||| || ||||| ||||| || ||||| || || |||||| | || Sbjct: 662 actcctatggagtctggttgctgccgtccaccggcagagtgcgggtacccagctgtaaac 721 Query: 687 gcttccacttttgatttgagctatcatccggtgagcacaaacgtcgactgcaaactctac 746 |||||| |||||||||||||||||||| || ||||| || |||||||||||||| ||| Sbjct: 722 gcttcctactttgatttgagctatcatccagtcagcacgaatgtcgactgcaaactgtac 781 Query: 747 aaaaatgatcggtccctcaggtgctatgactgtaattcttgcaaagctggggttgcgcaa 806 ||||| | || || | ||||||||| ||| |||||||||||||||||||||| ||| Sbjct: 782 aaaaacgcacgctctgttctgtgctatgattgtgattcttgcaaagctggggttgctcaa 841 Query: 807 tacatgaagacagagtggcgggtggttgccatcttcaatgtggtattgtttgttattttg 866 |||||||| ||||||||| ||||||| |||||||| || || || ||||||| || ||| Sbjct: 842 tacatgaaaacagagtggagggtggtagccatctttaacgtcatactgtttgtcatcttg 901 Query: 867 tcattcgtatactt 880 || ||||| ||||| Sbjct: 902 tctttcgtctactt 915
>gb|BT018247.1| Zea mays clone EL01N0563E06.c mRNA sequence Length = 1201 Score = 133 bits (67), Expect = 1e-27 Identities = 307/387 (79%) Strand = Plus / Plus Query: 509 acagctcaatgacactgataaatggattcatctgagaagttgccttgtgaagtcggatga 568 ||||||| ||||||| || |||||| || |||| ||| ||||| |||||| | ||||| Sbjct: 752 acagctcgatgacacggagaaatgggctcgcctgaaaagctgcctggtgaagacagatga 811 Query: 569 ttgcaatagcttgtcgaaaagatataagactctaaaacaatacaagcttgctgatctgac 628 ||||||||| |||||| |||||| ||||| | | |||||||||| || || || || Sbjct: 812 ctgcaatagcctgtcgagaagatacaagaccgcgagagaatacaagctcgcggacctcac 871 Query: 629 tcccattgagtctggctgttgccgcccaccagcggagtgtggatatccagctttgaatgc 688 |||||| ||||| || || |||||||| ||||| ||||| || | || ||| |||| || Sbjct: 872 tcccatggagtcgggttgctgccgcccgccagcagagtgcgggttccctgctctgaacgc 931 Query: 689 ttccacttttgatttgagctatcatccggtgagcacaaacgtcgactgcaaactctacaa 748 ||| ||| ||| |||||||||| |||| |||| | |||| |||||||||| | |||| Sbjct: 932 atcctatttcgatctgagctatcacccggcgagcgccaacgccgactgcaaaatgtacag 991 Query: 749 aaatgatcggtccctcaggtgctatgactgtaattcttgcaaagctggggttgcgcaata 808 || | || || || ||||||| ||||| | |||||||||||||| || ||||| || Sbjct: 992 gaacgcgcgctctgtccggtgctacgactgcagctcttgcaaagctggtgtcgcgcagta 1051 Query: 809 catgaagacagagtggcgggtggttgccatcttcaatgtggtattgtttgttattttgtc 868 ||||||||| |||||||| ||||| || |||||||| ||| ||||||| || || |||| Sbjct: 1052 catgaagacggagtggcgagtggtggctatcttcaacgtgatattgttcgtcatcctgtc 1111 Query: 869 attcgtatactttgttggctgctgcgc 895 ||||| ||||| |||||||||||||| Sbjct: 1112 gttcgtgtacttcgttggctgctgcgc 1138 Score = 127 bits (64), Expect = 9e-26 Identities = 103/116 (88%) Strand = Plus / Plus Query: 315 ggattcgtgggtgcttggaagaacatttcctgcttgctttggacatatctaatcatgctg 374 |||||| | ||||| ||||||||||| ||||||||||| ||||||| || ||||||||| Sbjct: 1 ggattccttggtgcctggaagaacatctcctgcttgctctggacattcctgatcatgctg 60 Query: 375 ttcgtggtcctggtggcaatcatggtcttcacagtgcttgcgtttatcattacaaa 430 ||||||||| |||||||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct: 61 ttcgtggtcttggtggcaatcatggtgttcacggtgctcgcgtttatcataacaaa 116 Score = 63.9 bits (32), Expect = 1e-06 Identities = 44/48 (91%) Strand = Plus / Plus Query: 465 tataaagagtatcgtcttcaggactacagctcttggttcgtcaaacag 512 ||||||||||| ||||| |||||||||||||| ||||| ||||||||| Sbjct: 568 tataaagagtaccgtctccaggactacagctcctggtttgtcaaacag 615
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence Length = 178867 Score = 107 bits (54), Expect = 8e-20 Identities = 99/114 (86%) Strand = Plus / Minus Query: 191 gatactggcgatacttgtggtgggttttgggttctggatgagcacccacaatgacgagtg 250 ||||||||| |||| |||||||| || ||||||||||||||||||||||| ||||| || Sbjct: 11055 gatactggcactactggtggtggggttcgggttctggatgagcacccacaacgacgaatg 10996 Query: 251 ccgacggtcactcacgatccctgtcatggcccttggaggagtaatttttctcat 304 | | ||||| | |||||||||||||||| ||||||||||||||||| ||||| Sbjct: 10995 caggcggtccttgacgatccctgtcatgggtcttggaggagtaattttcctcat 10942 Score = 73.8 bits (37), Expect = 1e-09 Identities = 46/49 (93%) Strand = Plus / Minus Query: 369 atgctgttcgtggtcctggtggcaatcatggtcttcacagtgcttgcgt 417 |||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct: 10688 atgctgttcgtggttttggtggcaatcatggtgttcacagtgcttgcgt 10640 Score = 71.9 bits (36), Expect = 5e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 696 tttgatttgagctatcatccggtgagcacaaacgtcgactgcaaactctacaaaaa 751 |||||||||||||||||||| || ||||| || |||||||||||||| |||||||| Sbjct: 9580 tttgatttgagctatcatccagtcagcacgaatgtcgactgcaaactgtacaaaaa 9525 Score = 69.9 bits (35), Expect = 2e-08 Identities = 47/51 (92%) Strand = Plus / Minus Query: 791 agctggggttgcgcaatacatgaagacagagtggcgggtggttgccatctt 841 |||||||||||| ||||||||||| ||||||||| ||||||| |||||||| Sbjct: 9391 agctggggttgctcaatacatgaaaacagagtggagggtggtagccatctt 9341 Score = 69.9 bits (35), Expect = 2e-08 Identities = 71/83 (85%) Strand = Plus / Minus Query: 510 cagctcaatgacactgataaatggattcatctgagaagttgccttgtgaagtcggatgat 569 ||||| ||||||||||| ||||||| ||| |||||||| || |||||||| || |||||| Sbjct: 9988 cagctgaatgacactgaaaaatggactcacctgagaagctgtcttgtgaaatcagatgat 9929 Query: 570 tgcaatagcttgtcgaaaagata 592 || ||| ||||||| | |||||| Sbjct: 9928 tgtaatggcttgtcaagaagata 9906 Score = 65.9 bits (33), Expect = 3e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 147 agcaccagcaccttcgtcatcaggtggatcaacttcctcaccatg 191 ||||| ||| |||||||||||||||||||||||||| |||||||| Sbjct: 11653 agcacaagcgccttcgtcatcaggtggatcaacttcttcaccatg 11609 Score = 63.9 bits (32), Expect = 1e-06 Identities = 56/64 (87%) Strand = Plus / Minus Query: 595 agactctaaaacaatacaagcttgctgatctgactcccattgagtctggctgttgccgcc 654 ||||||| ||||||||||||||||| ||||| ||||| || |||||||| || ||||| | Sbjct: 9777 agactctgaaacaatacaagcttgcagatcttactcctatggagtctggttgctgccgtc 9718 Query: 655 cacc 658 |||| Sbjct: 9717 cacc 9714 Score = 50.1 bits (25), Expect = 0.017 Identities = 40/45 (88%) Strand = Plus / Minus Query: 468 aaagagtatcgtcttcaggactacagctcttggttcgtcaaacag 512 |||||||||||||| ||||| || ||||||||||| |||||||| Sbjct: 10132 aaagagtatcgtctgcaggattatagctcttggtttatcaaacag 10088
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence Length = 130058 Score = 107 bits (54), Expect = 8e-20 Identities = 99/114 (86%) Strand = Plus / Minus Query: 191 gatactggcgatacttgtggtgggttttgggttctggatgagcacccacaatgacgagtg 250 ||||||||| |||| |||||||| || ||||||||||||||||||||||| ||||| || Sbjct: 76913 gatactggcactactggtggtggggttcgggttctggatgagcacccacaacgacgaatg 76854 Query: 251 ccgacggtcactcacgatccctgtcatggcccttggaggagtaatttttctcat 304 | | ||||| | |||||||||||||||| ||||||||||||||||| ||||| Sbjct: 76853 caggcggtccttgacgatccctgtcatgggtcttggaggagtaattttcctcat 76800 Score = 73.8 bits (37), Expect = 1e-09 Identities = 46/49 (93%) Strand = Plus / Minus Query: 369 atgctgttcgtggtcctggtggcaatcatggtcttcacagtgcttgcgt 417 |||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct: 76546 atgctgttcgtggttttggtggcaatcatggtgttcacagtgcttgcgt 76498 Score = 71.9 bits (36), Expect = 5e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 696 tttgatttgagctatcatccggtgagcacaaacgtcgactgcaaactctacaaaaa 751 |||||||||||||||||||| || ||||| || |||||||||||||| |||||||| Sbjct: 75438 tttgatttgagctatcatccagtcagcacgaatgtcgactgcaaactgtacaaaaa 75383 Score = 69.9 bits (35), Expect = 2e-08 Identities = 47/51 (92%) Strand = Plus / Minus Query: 791 agctggggttgcgcaatacatgaagacagagtggcgggtggttgccatctt 841 |||||||||||| ||||||||||| ||||||||| ||||||| |||||||| Sbjct: 75249 agctggggttgctcaatacatgaaaacagagtggagggtggtagccatctt 75199 Score = 69.9 bits (35), Expect = 2e-08 Identities = 71/83 (85%) Strand = Plus / Minus Query: 510 cagctcaatgacactgataaatggattcatctgagaagttgccttgtgaagtcggatgat 569 ||||| ||||||||||| ||||||| ||| |||||||| || |||||||| || |||||| Sbjct: 75846 cagctgaatgacactgaaaaatggactcacctgagaagctgtcttgtgaaatcagatgat 75787 Query: 570 tgcaatagcttgtcgaaaagata 592 || ||| ||||||| | |||||| Sbjct: 75786 tgtaatggcttgtcaagaagata 75764 Score = 65.9 bits (33), Expect = 3e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 147 agcaccagcaccttcgtcatcaggtggatcaacttcctcaccatg 191 ||||| ||| |||||||||||||||||||||||||| |||||||| Sbjct: 77511 agcacaagcgccttcgtcatcaggtggatcaacttcttcaccatg 77467 Score = 63.9 bits (32), Expect = 1e-06 Identities = 56/64 (87%) Strand = Plus / Minus Query: 595 agactctaaaacaatacaagcttgctgatctgactcccattgagtctggctgttgccgcc 654 ||||||| ||||||||||||||||| ||||| ||||| || |||||||| || ||||| | Sbjct: 75635 agactctgaaacaatacaagcttgcagatcttactcctatggagtctggttgctgccgtc 75576 Query: 655 cacc 658 |||| Sbjct: 75575 cacc 75572 Score = 50.1 bits (25), Expect = 0.017 Identities = 40/45 (88%) Strand = Plus / Minus Query: 468 aaagagtatcgtcttcaggactacagctcttggttcgtcaaacag 512 |||||||||||||| ||||| || ||||||||||| |||||||| Sbjct: 75990 aaagagtatcgtctgcaggattatagctcttggtttatcaaacag 75946
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 107 bits (54), Expect = 8e-20 Identities = 99/114 (86%) Strand = Plus / Minus Query: 191 gatactggcgatacttgtggtgggttttgggttctggatgagcacccacaatgacgagtg 250 ||||||||| |||| |||||||| || ||||||||||||||||||||||| ||||| || Sbjct: 18715635 gatactggcactactggtggtggggttcgggttctggatgagcacccacaacgacgaatg 18715576 Query: 251 ccgacggtcactcacgatccctgtcatggcccttggaggagtaatttttctcat 304 | | ||||| | |||||||||||||||| ||||||||||||||||| ||||| Sbjct: 18715575 caggcggtccttgacgatccctgtcatgggtcttggaggagtaattttcctcat 18715522 Score = 73.8 bits (37), Expect = 1e-09 Identities = 46/49 (93%) Strand = Plus / Minus Query: 369 atgctgttcgtggtcctggtggcaatcatggtcttcacagtgcttgcgt 417 |||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct: 18715268 atgctgttcgtggttttggtggcaatcatggtgttcacagtgcttgcgt 18715220 Score = 71.9 bits (36), Expect = 5e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 696 tttgatttgagctatcatccggtgagcacaaacgtcgactgcaaactctacaaaaa 751 |||||||||||||||||||| || ||||| || |||||||||||||| |||||||| Sbjct: 18714160 tttgatttgagctatcatccagtcagcacgaatgtcgactgcaaactgtacaaaaa 18714105 Score = 69.9 bits (35), Expect = 2e-08 Identities = 47/51 (92%) Strand = Plus / Minus Query: 791 agctggggttgcgcaatacatgaagacagagtggcgggtggttgccatctt 841 |||||||||||| ||||||||||| ||||||||| ||||||| |||||||| Sbjct: 18713971 agctggggttgctcaatacatgaaaacagagtggagggtggtagccatctt 18713921 Score = 69.9 bits (35), Expect = 2e-08 Identities = 71/83 (85%) Strand = Plus / Minus Query: 510 cagctcaatgacactgataaatggattcatctgagaagttgccttgtgaagtcggatgat 569 ||||| ||||||||||| ||||||| ||| |||||||| || |||||||| || |||||| Sbjct: 18714568 cagctgaatgacactgaaaaatggactcacctgagaagctgtcttgtgaaatcagatgat 18714509 Query: 570 tgcaatagcttgtcgaaaagata 592 || ||| ||||||| | |||||| Sbjct: 18714508 tgtaatggcttgtcaagaagata 18714486 Score = 65.9 bits (33), Expect = 3e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 147 agcaccagcaccttcgtcatcaggtggatcaacttcctcaccatg 191 ||||| ||| |||||||||||||||||||||||||| |||||||| Sbjct: 18716233 agcacaagcgccttcgtcatcaggtggatcaacttcttcaccatg 18716189 Score = 63.9 bits (32), Expect = 1e-06 Identities = 56/64 (87%) Strand = Plus / Minus Query: 595 agactctaaaacaatacaagcttgctgatctgactcccattgagtctggctgttgccgcc 654 ||||||| ||||||||||||||||| ||||| ||||| || |||||||| || ||||| | Sbjct: 18714357 agactctgaaacaatacaagcttgcagatcttactcctatggagtctggttgctgccgtc 18714298 Query: 655 cacc 658 |||| Sbjct: 18714297 cacc 18714294 Score = 50.1 bits (25), Expect = 0.017 Identities = 40/45 (88%) Strand = Plus / Minus Query: 468 aaagagtatcgtcttcaggactacagctcttggttcgtcaaacag 512 |||||||||||||| ||||| || ||||||||||| |||||||| Sbjct: 18714712 aaagagtatcgtctgcaggattatagctcttggtttatcaaacag 18714668
>ref|NM_105005.3| Arabidopsis thaliana unknown protein (AT1G63260) mRNA, complete cds Length = 1405 Score = 75.8 bits (38), Expect = 3e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 775 actgtaattcttgcaaagctggggttgcgcaatacatgaagacagagtggcgggtggttg 834 ||||| |||||||||||||||| ||||| || |||||||| || |||||||| | |||| Sbjct: 883 actgtgattcttgcaaagctggagttgctcagtacatgaaaaccgagtggcgacttgttg 942 Query: 835 ccatcttcaatgtggtattgtttgtt 860 | |||||||||||||| |||||||| Sbjct: 943 cgatcttcaatgtggtcctgtttgtt 968
>ref|NM_001036145.1| Arabidopsis thaliana unknown protein (AT1G63260) mRNA, complete cds Length = 1313 Score = 75.8 bits (38), Expect = 3e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 775 actgtaattcttgcaaagctggggttgcgcaatacatgaagacagagtggcgggtggttg 834 ||||| |||||||||||||||| ||||| || |||||||| || |||||||| | |||| Sbjct: 883 actgtgattcttgcaaagctggagttgctcagtacatgaaaaccgagtggcgacttgttg 942 Query: 835 ccatcttcaatgtggtattgtttgtt 860 | |||||||||||||| |||||||| Sbjct: 943 cgatcttcaatgtggtcctgtttgtt 968
>emb|BX816848.1|CNS0ADVJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH71ZC11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1405 Score = 75.8 bits (38), Expect = 3e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 775 actgtaattcttgcaaagctggggttgcgcaatacatgaagacagagtggcgggtggttg 834 ||||| |||||||||||||||| ||||| || |||||||| || |||||||| | |||| Sbjct: 883 actgtgattcttgcaaagctggagttgctcagtacatgaaaaccgagtggcgacttgttg 942 Query: 835 ccatcttcaatgtggtattgtttgtt 860 | |||||||||||||| |||||||| Sbjct: 943 cgatcttcaatgtggtcctgtttgtt 968
>ref|NM_202348.1| Arabidopsis thaliana unknown protein (AT1G63260) mRNA, complete cds Length = 1247 Score = 67.9 bits (34), Expect = 7e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 775 actgtaattcttgcaaagctggggttgcgcaatacatgaagacagagtggcgggtggttg 834 ||||| |||||||||||||||| ||||| || |||||||| || |||||||| | |||| Sbjct: 883 actgtgattcttgcaaagctggagttgctcagtacatgaaaaccgagtggcgacttgttg 942 Query: 835 ccatcttcaatgtg 848 | |||||||||||| Sbjct: 943 cgatcttcaatgtg 956
>dbj|AK228132.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-60-J23 Length = 1203 Score = 60.0 bits (30), Expect = 2e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 775 actgtaattcttgcaaagctggggttgcgcaatacatgaagacagagtggcgggtggttg 834 ||||| |||||||||||||||| |||| || |||||||| || |||||||| | |||| Sbjct: 829 actgtgattcttgcaaagctggagttggtcagtacatgaaaaccgagtggcgacttgttg 888 Query: 835 ccatcttcaatgtg 848 | |||||||||||| Sbjct: 889 cgatcttcaatgtg 902
>gb|BT012253.1| Arabidopsis thaliana At1g63260 gene, complete cds Length = 777 Score = 60.0 bits (30), Expect = 2e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 775 actgtaattcttgcaaagctggggttgcgcaatacatgaagacagagtggcgggtggttg 834 ||||| |||||||||||||||| ||||| || |||||||| || |||||||| | |||| Sbjct: 638 actgtgattcttgcaaagctggagttgctcagtacatgaaaaccgagtggcgacttgttg 697 Query: 835 ccatcttcaa 844 | |||||||| Sbjct: 698 cgatcttcaa 707
>gb|BT011569.1| Arabidopsis thaliana At1g63260 mRNA, complete cds Length = 1084 Score = 60.0 bits (30), Expect = 2e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 775 actgtaattcttgcaaagctggggttgcgcaatacatgaagacagagtggcgggtggttg 834 ||||| |||||||||||||||| ||||| || |||||||| || |||||||| | |||| Sbjct: 824 actgtgattcttgcaaagctggagttgctcagtacatgaaaaccgagtggcgacttgttg 883 Query: 835 ccatcttcaa 844 | |||||||| Sbjct: 884 cgatcttcaa 893
>gb|AC022355.5|AC022355 Arabidopsis thaliana chromosome 1 BAC F9N12 genomic sequence, complete sequence Length = 67712 Score = 52.0 bits (26), Expect = 0.004 Identities = 59/70 (84%) Strand = Plus / Plus Query: 791 agctggggttgcgcaatacatgaagacagagtggcgggtggttgccatcttcaatgtggt 850 |||||| ||||| || |||||||| || |||||||| | ||||| |||||||||||||| Sbjct: 41521 agctggagttgctcagtacatgaaaaccgagtggcgacttgttgcgatcttcaatgtggt 41580 Query: 851 attgtttgtt 860 |||||||| Sbjct: 41581 cctgtttgtt 41590
>gb|AC020642.7| Homo sapiens chromosome 10 clone RP11-275D14, complete sequence Length = 145697 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Minus Query: 838 tcttcaatgtggtattgtttgtt 860 ||||||||||||||||||||||| Sbjct: 75270 tcttcaatgtggtattgtttgtt 75248
>gb|CP000219.2| Drosophila melanogaster genomic scaffold 211000022280778 Length = 192632 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 737 caaactctacaaaaatgatcgg 758 |||||||||||||||||||||| Sbjct: 84850 caaactctacaaaaatgatcgg 84829
>gb|AC149268.21| Medicago truncatula clone mth2-94j16, complete sequence Length = 146810 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 771 tatgactgtaattcttgcaaagctgg 796 ||||||||| |||||||||||||||| Sbjct: 67768 tatgactgtgattcttgcaaagctgg 67793
>gb|AC147676.10| Canis Familiaris, clone XX-25H12, complete sequence Length = 203436 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 141 ggcaccagcaccagcaccttcg 162 |||||||||||||||||||||| Sbjct: 101292 ggcaccagcaccagcaccttcg 101313
>emb|AL844857.5| Mouse DNA sequence from clone RP23-74L17 on chromosome X, complete sequence Length = 209399 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 845 tgtggtattgtttgttattttg 866 |||||||||||||||||||||| Sbjct: 180072 tgtggtattgtttgttattttg 180093
>emb|CT978680.6| Mouse DNA sequence from clone WI1-125H10 on chromosome 2, complete sequence Length = 40801 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 341 ttcctgcttgctttggacata 361 ||||||||||||||||||||| Sbjct: 16021 ttcctgcttgctttggacata 16041
>gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete sequence Length = 27905053 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 142 gcaccagcaccagcaccttcgtcat 166 ||||||||||||||||||| ||||| Sbjct: 27380251 gcaccagcaccagcaccttggtcat 27380227
>gb|AC156939.5| Mus musculus BAC clone RP23-136O24 from chromosome 12, complete sequence Length = 218561 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 966 tcctctctatgattcacgtgtcaca 990 ||||||||||||||||| ||||||| Sbjct: 24990 tcctctctatgattcacctgtcaca 24966
>ref|NM_106554.2| Arabidopsis thaliana heat shock protein binding / unfolded protein binding (AT1G79030) mRNA, complete cds Length = 1486 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1033 tcaagttcagctgatgaaatg 1053 ||||||||||||||||||||| Sbjct: 652 tcaagttcagctgatgaaatg 672
>gb|AC133507.4| Mus musculus BAC clone RP24-112C17 from chromosome 13, complete sequence Length = 187080 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 619 ctgatctgactcccattgagt 639 ||||||||||||||||||||| Sbjct: 128364 ctgatctgactcccattgagt 128344
>gb|AY207495.1| Chlamydomonas reinhardtii CR042 protein gene, complete cds Length = 4661 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 138 ggcggcaccagcaccagcacc 158 ||||||||||||||||||||| Sbjct: 418 ggcggcaccagcaccagcacc 398
>gb|AC091776.19| Chlamydomonas reinhardtii clone cr-4i21, complete sequence Length = 48498 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 ggcggcaccagcaccagcacc 158 ||||||||||||||||||||| Sbjct: 22000 ggcggcaccagcaccagcacc 22020
>ref|NM_001039326.1| Gallus gallus HMG transcription factor SOX17 (SOX17), mRNA dbj|AB197131.1| Gallus gallus sox17 mRNA for HMG transcription factor SOX17, complete cds Length = 1581 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 ggcggcaccagcaccagcacc 158 ||||||||||||||||||||| Sbjct: 810 ggcggcaccagcaccagcacc 830
>gb|AC080089.5| Homo sapiens BAC clone RP11-785J10 from 4, complete sequence Length = 174023 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 592 ataagactctaaaacaataca 612 ||||||||||||||||||||| Sbjct: 24767 ataagactctaaaacaataca 24787
>gb|AC009349.6|AC009349 Drosophila melanogaster, chromosome 3R, region 100C-100C, BAC clone BACR10O09, complete sequence Length = 165555 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 142 gcaccagcaccagcaccttcgtcat 166 ||||||||||||||||||| ||||| Sbjct: 117723 gcaccagcaccagcaccttggtcat 117699
>gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, complete sequence Length = 79677 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 ggcggcaccagcaccagcacc 158 ||||||||||||||||||||| Sbjct: 714 ggcggcaccagcaccagcacc 734
>emb|AL928960.25| Mouse DNA sequence from clone RP23-413K16 on chromosome 2, complete sequence Length = 195733 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 341 ttcctgcttgctttggacata 361 ||||||||||||||||||||| Sbjct: 125521 ttcctgcttgctttggacata 125541
>gb|AC161254.2| Mus musculus BAC clone RP24-124O5 from chromosome 12, complete sequence Length = 171442 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 966 tcctctctatgattcacgtgtcaca 990 ||||||||||||||||| ||||||| Sbjct: 96911 tcctctctatgattcacctgtcaca 96887
>gb|U58208.1|ZMU58208 Zea mays lumenal binding protein cBiPe2 mRNA, complete cds Length = 2338 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 135 atgggcggcaccagcaccagcacct 159 |||||||||||| |||||||||||| Sbjct: 128 atgggcggcaccggcaccagcacct 104
>gb|AC002986.1|YUP8H12R Arabidopsis thaliana chromosome 1 YAC YUP8H12R sequence, complete sequence Length = 181925 Score = 42.1 bits (21), Expect = 4.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1033 tcaagttcagctgatgaaatg 1053 ||||||||||||||||||||| Sbjct: 127297 tcaagttcagctgatgaaatg 127317
>emb|AL611968.7| Mouse DNA sequence from clone RP23-29D6 on chromosome 4, complete sequence Length = 206407 Score = 42.1 bits (21), Expect = 4.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 428 aaatactggaactggtcatgctgtt 452 ||||||||||||||||||| ||||| Sbjct: 109039 aaatactggaactggtcattctgtt 109063 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 190,635,347 Number of extensions: 10280837 Number of successful extensions: 192998 Number of sequences better than 10.0: 35 Number of HSP's gapped: 192996 Number of HSP's successfully gapped: 60 Length of query: 1088 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1065 Effective length of database: 18,503,978,556 Effective search space: 19706737162140 Effective search space used: 19706737162140 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)