ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf73m02 |
|---|---|
| Clone Library Name | barley_pub |
>P47926:RSI1_SOLLC RSI-1 protein precursor - Solanum lycopersicum (Tomato)| (Lycopersicon esculentum) Length = 96 Score = 119 bits (297), Expect = 2e-26 Identities = 45/68 (66%), Positives = 52/68 (76%) Frame = +1 Query: 208 GQGSLKIYQCKPVCEYRCSDTKYRKPCLFFCNKCCNTCLCVPSGFYGHKYECPCYNNWKT 387 G L+ CKP C YRCS T ++KPC+FFC KCC TCLCVP G YG+K CPCYNNWKT Sbjct: 29 GYNKLRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKT 88 Query: 388 KEGRPKCP 411 +EG+PKCP Sbjct: 89 QEGKPKCP 96
>P27057:GAST1_SOLLC GAST1 protein precursor - Solanum lycopersicum (Tomato)| (Lycopersicon esculentum) Length = 112 Score = 117 bits (294), Expect = 4e-26 Identities = 47/81 (58%), Positives = 57/81 (70%) Frame = +1 Query: 169 EEHEDNVYRVSKGGQGSLKIYQCKPVCEYRCSDTKYRKPCLFFCNKCCNTCLCVPSGFYG 348 ++ + +Y VS +G L C+P C YRCS T Y+KPC+FFC KCC CLCVP+G YG Sbjct: 35 QQRNNQLYGVS---EGRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYG 91 Query: 349 HKYECPCYNNWKTKEGRPKCP 411 +K CPCYNNWKTK G PKCP Sbjct: 92 NKQSCPCYNNWKTKRGGPKCP 112
>P46690:GASA4_ARATH Gibberellin-regulated protein 4 precursor - Arabidopsis thaliana| (Mouse-ear cress) Length = 106 Score = 109 bits (272), Expect = 1e-23 Identities = 43/68 (63%), Positives = 49/68 (72%) Frame = +1 Query: 208 GQGSLKIYQCKPVCEYRCSDTKYRKPCLFFCNKCCNTCLCVPSGFYGHKYECPCYNNWKT 387 G GSLK QC C+ RC T+Y K C+ FCNKCC CLCVP G+YG+K C CYNNWKT Sbjct: 39 GPGSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKT 98 Query: 388 KEGRPKCP 411 +EG PKCP Sbjct: 99 QEGGPKCP 106
>P46688:GASA2_ARATH Gibberellin-regulated protein 2 precursor - Arabidopsis thaliana| (Mouse-ear cress) Length = 99 Score = 70.1 bits (170), Expect = 9e-12 Identities = 33/71 (46%), Positives = 42/71 (59%) Frame = +1 Query: 199 SKGGQGSLKIYQCKPVCEYRCSDTKYRKPCLFFCNKCCNTCLCVPSGFYGHKYECPCYNN 378 +K G+G +KI C C+ RCS + K CL CN CC+ C CVP G G+ + CPCY + Sbjct: 30 AKVGEGVVKI-DCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYAS 88 Query: 379 WKTKEGRPKCP 411 T GR KCP Sbjct: 89 ITTHGGRLKCP 99
>P46687:GASA3_ARATH Gibberellin-regulated protein 3 precursor - Arabidopsis thaliana| (Mouse-ear cress) Length = 99 Score = 67.4 bits (163), Expect = 6e-11 Identities = 32/71 (45%), Positives = 41/71 (57%) Frame = +1 Query: 199 SKGGQGSLKIYQCKPVCEYRCSDTKYRKPCLFFCNKCCNTCLCVPSGFYGHKYECPCYNN 378 S+ G+G +KI C C+ RCS + CL CN CC C CVP G G+ + CPCY + Sbjct: 30 SQVGEGVVKI-DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYAS 88 Query: 379 WKTKEGRPKCP 411 T+ GR KCP Sbjct: 89 ITTRGGRLKCP 99
>P46689:GASA1_ARATH Gibberellin-regulated protein 1 precursor - Arabidopsis thaliana| (Mouse-ear cress) Length = 98 Score = 57.8 bits (138), Expect = 5e-08 Identities = 27/71 (38%), Positives = 34/71 (47%) Frame = +1 Query: 199 SKGGQGSLKIYQCKPVCEYRCSDTKYRKPCLFFCNKCCNTCLCVPSGFYGHKYECPCYNN 378 S+ G K C C RC ++ + C C CC C CVP G YG+ +C CY + Sbjct: 28 SQKKNGYAKKIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYAS 87 Query: 379 WKTKEGRPKCP 411 T GR KCP Sbjct: 88 LTTHGGRRKCP 98
>P41710:IE0_NPVAC Immediate-early protein IE-0 - Autographa californica nuclear| polyhedrosis virus (AcMNPV) Length = 261 Score = 34.3 bits (77), Expect = 0.56 Identities = 19/65 (29%), Positives = 28/65 (43%) Frame = +1 Query: 217 SLKIYQCKPVCEYRCSDTKYRKPCLFFCNKCCNTCLCVPSGFYGHKYECPCYNNWKTKEG 396 +L +Y+C VC+ +D ++ KP +CC +C C N WKT Sbjct: 206 NLVLYECN-VCKEISTDERFLKP-----KECCEYAIC----------NACCVNMWKTATT 249 Query: 397 RPKCP 411 KCP Sbjct: 250 HAKCP 254
>O88281:MEGF6_RAT Multiple epidermal growth factor-like domains 6 precursor - Rattus| norvegicus (Rat) Length = 1574 Score = 33.5 bits (75), Expect = 0.95 Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 8/51 (15%) Frame = +1 Query: 241 PVCEYRCSDTKYRKPCLFFC----NKCC----NTCLCVPSGFYGHKYECPC 369 P CE+ C +Y CL C N C CLC P GFYG E C Sbjct: 1376 PHCEHACPAGRYGAACLLECFCQNNGSCEPTTGACLCGP-GFYGQACEHSC 1425 Score = 30.8 bits (68), Expect = 6.2 Identities = 18/58 (31%), Positives = 24/58 (41%) Frame = +1 Query: 208 GQGSLKIYQCKPVCEYRCSDTKYRKPCLFFCNKCCNTCLCVPSGFYGHKYECPCYNNW 381 G+ L + P CE+ S CN TCLC+P GF G + + C W Sbjct: 780 GRWGLGCQEICPACEHGAS-----------CNPETGTCLCLP-GFVGSRCQDTCSAGW 825
>Q80V70:MEGF6_MOUSE Multiple epidermal growth factor-like domains 6 precursor - Mus| musculus (Mouse) Length = 1572 Score = 33.5 bits (75), Expect = 0.95 Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 8/51 (15%) Frame = +1 Query: 241 PVCEYRCSDTKYRKPCLFFC----NKCC----NTCLCVPSGFYGHKYECPC 369 P CE+ C +Y CL C N C CLC P GFYG E C Sbjct: 1374 PHCEHACPAGRYGAACLLECSCQNNGSCEPTSGACLCGP-GFYGQACEDTC 1423
>O10369:IE0_NPVOP Immediate-early protein IE-0 - Orgyia pseudotsugata multicapsid| polyhedrosis virus (OpMNPV) Length = 245 Score = 33.5 bits (75), Expect = 0.95 Identities = 25/88 (28%), Positives = 37/88 (42%) Frame = +1 Query: 148 KVSASGTEEHEDNVYRVSKGGQGSLKIYQCKPVCEYRCSDTKYRKPCLFFCNKCCNTCLC 327 +V A+G N++ S G +Y+C +C+ +D ++ KP +CC LC Sbjct: 171 RVEAAGRALQVMNLFLNSGG-----PLYECD-LCKEASADPRFLKP-----KECCQYSLC 219 Query: 328 VPSGFYGHKYECPCYNNWKTKEGRPKCP 411 Y C C WKT KCP Sbjct: 220 ---------YAC-CVALWKTASTHAKCP 237
>P08799:MYS2_DICDI Myosin-2 heavy chain, non muscle - Dictyostelium discoideum (Slime| mold) Length = 2116 Score = 32.7 bits (73), Expect = 1.6 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 2/45 (4%) Frame = +3 Query: 351 QVRVPLLQQ-LEDQGGTPQVPLVAKKDS-ASPLKPLLDRPSQSRI 479 +VRV L++ LED+ GT V + KKD+ L+ LDR ++SRI Sbjct: 1513 EVRVAELEESLEDKSGTVNVEFIRKKDAEIDDLRARLDRETESRI 1557
>P59222:SREC2_MOUSE Scavenger receptor class F member 2 precursor - Mus musculus| (Mouse) Length = 833 Score = 31.6 bits (70), Expect = 3.6 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 8/49 (16%) Frame = +1 Query: 247 CEYRCSDTKYRKPCLFFCNKC--------CNTCLCVPSGFYGHKYECPC 369 CE +CS+ Y + C F C+ C CLC P G +G C Sbjct: 351 CETKCSNGTYGEDCAFVCSDCGSGHCDFQSGRCLCSP-GVHGPHCNVTC 398 Score = 30.4 bits (67), Expect = 8.1 Identities = 17/57 (29%), Positives = 25/57 (43%) Frame = +1 Query: 241 PVCEYRCSDTKYRKPCLFFCNKCCNTCLCVPSGFYGHKYECPCYNNWKTKEGRPKCP 411 P C RC K ++PC +C C P G+ G K + PC + + +CP Sbjct: 272 PGCRRRCGQCKGQQPCTVVEGRCLT---CEP-GWNGTKCDQPCATGFYGEGCGHRCP 324
>Q5M807:RNF5_RAT E3 ubiquitin-protein ligase RNF5 - Rattus norvegicus (Rat)| Length = 180 Score = 31.6 bits (70), Expect = 3.6 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 292 FFCNKCCNTCLCVPSGFYGHKYECPCYNNW-KTKEGRPKCP 411 F CN C T GH Y PC + W +T+ R +CP Sbjct: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECP 65
>O35445:RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 - Mus musculus (Mouse)| Length = 180 Score = 31.6 bits (70), Expect = 3.6 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 292 FFCNKCCNTCLCVPSGFYGHKYECPCYNNW-KTKEGRPKCP 411 F CN C T GH Y PC + W +T+ R +CP Sbjct: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECP 65
>Q99942:RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 - Homo sapiens (Human)| Length = 180 Score = 31.2 bits (69), Expect = 4.7 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 292 FFCNKCCNTCLCVPSGFYGHKYECPCYNNW-KTKEGRPKCP 411 F CN C T GH Y PC + W +T+ R +CP Sbjct: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECP 65
>P54956:YXEQ_BACSU Uncharacterized protein yxeQ - Bacillus subtilis| Length = 445 Score = 30.8 bits (68), Expect = 6.1 Identities = 12/27 (44%), Positives = 20/27 (74%) Frame = +3 Query: 366 LLQQLEDQGGTPQVPLVAKKDSASPLK 446 LL+ +ED+GG P VP++ + A+PL+ Sbjct: 52 LLRLIEDEGGRPLVPVIGQGKKAAPLQ 78
>Q96GP6:SREC2_HUMAN Scavenger receptor class F member 2 precursor - Homo sapiens| (Human) Length = 866 Score = 30.4 bits (67), Expect = 8.1 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 8/49 (16%) Frame = +1 Query: 247 CEYRCSDTKYRKPCLFFCNKC--------CNTCLCVPSGFYGHKYECPC 369 CE +CS+ Y + C F C C CLC P G +G C Sbjct: 359 CETKCSNGTYGEDCAFVCADCGSGHCDFQSGRCLCSP-GVHGPHCNVTC 406
>Q568Y3:RN185_RAT RING finger protein 185 - Rattus norvegicus (Rat)| Length = 192 Score = 30.4 bits (67), Expect = 8.1 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 292 FFCNKCCNTCLCVPSGFYGHKYECPCYNNW-KTKEGRPKCP 411 F CN C +T GH + PC + W +T+ R CP Sbjct: 37 FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCP 77
>Q5RFK9:RN185_PONPY RING finger protein 185 - Pongo pygmaeus (Orangutan)| Length = 192 Score = 30.4 bits (67), Expect = 8.1 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 292 FFCNKCCNTCLCVPSGFYGHKYECPCYNNW-KTKEGRPKCP 411 F CN C +T GH + PC + W +T+ R CP Sbjct: 37 FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCP 77
>Q91YT2:RN185_MOUSE RING finger protein 185 - Mus musculus (Mouse)| Length = 192 Score = 30.4 bits (67), Expect = 8.1 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 292 FFCNKCCNTCLCVPSGFYGHKYECPCYNNW-KTKEGRPKCP 411 F CN C +T GH + PC + W +T+ R CP Sbjct: 37 FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCP 77
>Q96GF1:RN185_HUMAN RING finger protein 185 - Homo sapiens (Human)| Length = 192 Score = 30.4 bits (67), Expect = 8.1 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 292 FFCNKCCNTCLCVPSGFYGHKYECPCYNNW-KTKEGRPKCP 411 F CN C +T GH + PC + W +T+ R CP Sbjct: 37 FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCP 77
>Q5ZIR9:RN185_CHICK RING finger protein 185 - Gallus gallus (Chicken)| Length = 194 Score = 30.4 bits (67), Expect = 8.1 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 292 FFCNKCCNTCLCVPSGFYGHKYECPCYNNW-KTKEGRPKCP 411 F CN C +T GH + PC + W +T+ R CP Sbjct: 39 FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCP 79
>Q7JLI1:NAS31_CAEEL Zinc metalloproteinase nas-31 precursor - Caenorhabditis elegans| Length = 611 Score = 30.4 bits (67), Expect = 8.1 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Frame = +1 Query: 241 PVCEY-----RCSDTKYRKPCLFFCNKC-CNTCLCVPSGFYGHKYECPCYNNWKTKEGRP 402 P C++ C K R C F C+ C N S F+ + Y +NNW T + + Sbjct: 537 PNCDFYKFFGMCRSKKIRSNCKFTCHDCNNNNASPFGSNFFNNNYN--SFNNWYTNKNKN 594 Query: 403 KCP 411 P Sbjct: 595 YYP 597
>O75095:MEGF6_HUMAN Multiple epidermal growth factor-like domains 6 precursor - Homo| sapiens (Human) Length = 1229 Score = 30.4 bits (67), Expect = 8.1 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 8/64 (12%) Frame = +1 Query: 241 PVCEYRCSDTKYRKPCLF--------FCNKCCNTCLCVPSGFYGHKYECPCYNNWKTKEG 396 P C +C R C C+ CLC P+G+ G K + PC W + Sbjct: 879 PRCAEKCLPRDVRAGCRHSGGCLNGGLCDPHTGRCLC-PAGWTGDKCQSPCLRGWFGEAC 937 Query: 397 RPKC 408 +C Sbjct: 938 AQRC 941 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 122,883,555 Number of extensions: 2523189 Number of successful extensions: 6657 Number of sequences better than 10.0: 24 Number of HSP's gapped: 6630 Number of HSP's successfully gapped: 26 Length of query: 259 Length of database: 100,686,439 Length adjustment: 111 Effective length of query: 148 Effective length of database: 70,239,694 Effective search space: 10395474712 Effective search space used: 10395474712 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
