ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf76p08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_001054646.1| Oryza sativa (japonica cultivar-group) Os02g... 127 8e-26
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 127 8e-26
3dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic D... 127 8e-26
4dbj|AK103517.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 8e-26
5gb|AY107779.1| Zea mays PCO127499 mRNA sequence 66 3e-07
6gb|BT016250.1| Zea mays clone Contig83 mRNA sequence 58 6e-05
7emb|AL117337.26|HSA393J16 Human DNA sequence from clone RP11-393... 46 0.24
8gb|AF205588.1|AF205588 Homo sapiens ZNF01 and HUMORFKG1B genes, ... 46 0.24
9ref|NM_001063741.1| Oryza sativa (japonica cultivar-group) Os06g... 44 0.94
10ref|XM_001214753.1| Aspergillus terreus NIH2624 hypothetical pro... 44 0.94
11dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.94
12dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.94
13dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.94
14dbj|AK073517.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.94
15dbj|AK066970.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.94
16emb|CT830392.1| Oryza sativa (indica cultivar-group) cDNA clone:... 42 3.7
17gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 3.7
18gb|AY509869.1| Odocoileus virginianus pregnancy-associated glyco... 42 3.7
19gb|AC006507.21| Mus musculus strain 129S6/SvEvTac clone rp21-580... 42 3.7
20gb|AC140851.12| Mus musculus strain C57BL/6J clone rp23-358m4, c... 42 3.7
21gb|AC069242.13| Homo sapiens 3 BAC RP11-554J1 (Roswell Park Canc... 42 3.7
22dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.7
23gb|AC005818.6| Mus musculus strain 129S6/SvEvTac chromosome 10 c... 42 3.7
24gb|AC018884.6| Homo sapiens BAC clone RP11-369I16 from 4, comple... 42 3.7
25gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 42 3.7
26emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 42 3.7
27emb|BX324162.8| Zebrafish DNA sequence from clone DKEY-95O3 in l... 42 3.7
28gb|AC117457.11| Homo sapiens 3 BAC RP11-385J1 (Roswell Park Canc... 42 3.7
29emb|AL713935.5|CNS07YPG Oryza sativa chromosome 12, . BAC OJ1427... 42 3.7

>ref|NM_001054646.1| Oryza sativa (japonica cultivar-group) Os02g0745600 (Os02g0745600)
           mRNA, complete cds
          Length = 2017
 Score =  127 bits (64), Expect = 8e-26
 Identities = 91/100 (91%)
 Strand = Plus / Plus

                                                                       
Query: 65  aggtcaaattcaggattgataaagattgtcttccgcttcctgagagtagtttcaagcatg 124
           |||||||||| | | |||| |||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 716 aggtcaaatttaaggttgacaaagattgccttcctcttccggagagtagtttcaagcatg 775

                                                   
Query: 125 ccattaaggagaactacaattcaaagggaagattcaccca 164
           ||||||||||||||||||||||||||||||  ||||||||
Sbjct: 776 ccattaaggagaactacaattcaaagggaaagttcaccca 815



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score =  127 bits (64), Expect = 8e-26
 Identities = 91/100 (91%)
 Strand = Plus / Plus

                                                                            
Query: 65       aggtcaaattcaggattgataaagattgtcttccgcttcctgagagtagtttcaagcatg 124
                |||||||||| | | |||| |||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 31314136 aggtcaaatttaaggttgacaaagattgccttcctcttccggagagtagtttcaagcatg 31314195

                                                        
Query: 125      ccattaaggagaactacaattcaaagggaagattcaccca 164
                ||||||||||||||||||||||||||||||  ||||||||
Sbjct: 31314196 ccattaaggagaactacaattcaaagggaaagttcaccca 31314235



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>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1118_G04
          Length = 134464

 Score =  127 bits (64), Expect = 8e-26
 Identities = 91/100 (91%)
 Strand = Plus / Plus

                                                                         
Query: 65    aggtcaaattcaggattgataaagattgtcttccgcttcctgagagtagtttcaagcatg 124
             |||||||||| | | |||| |||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 84004 aggtcaaatttaaggttgacaaagattgccttcctcttccggagagtagtttcaagcatg 84063

                                                     
Query: 125   ccattaaggagaactacaattcaaagggaagattcaccca 164
             ||||||||||||||||||||||||||||||  ||||||||
Sbjct: 84064 ccattaaggagaactacaattcaaagggaaagttcaccca 84103



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>dbj|AK103517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131H10, full
           insert sequence
          Length = 2019

 Score =  127 bits (64), Expect = 8e-26
 Identities = 91/100 (91%)
 Strand = Plus / Plus

                                                                       
Query: 65  aggtcaaattcaggattgataaagattgtcttccgcttcctgagagtagtttcaagcatg 124
           |||||||||| | | |||| |||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 718 aggtcaaatttaaggttgacaaagattgccttcctcttccggagagtagtttcaagcatg 777

                                                   
Query: 125 ccattaaggagaactacaattcaaagggaagattcaccca 164
           ||||||||||||||||||||||||||||||  ||||||||
Sbjct: 778 ccattaaggagaactacaattcaaagggaaagttcaccca 817



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>gb|AY107779.1| Zea mays PCO127499 mRNA sequence
          Length = 1395

 Score = 65.9 bits (33), Expect = 3e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                       
Query: 78  gattgataaagattgtcttccgcttcctgagagtagtttcaagcatgccattaaggagaa 137
           ||||||||||||||| | ||| || |||||||||||| ||||||| ||||| ||||| ||
Sbjct: 273 gattgataaagattgccgtcctctccctgagagtagtctcaagcaagccatcaaggaaaa 332

                        
Query: 138 ctacaattcaaag 150
            |||||| |||||
Sbjct: 333 ttacaatgcaaag 345



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>gb|BT016250.1| Zea mays clone Contig83 mRNA sequence
          Length = 1277

 Score = 58.0 bits (29), Expect = 6e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 78  gattgataaagattgtcttccgcttcctgagagtagtttcaagcatgccattaagga 134
           ||||||||||||||| | ||| || |||||||||||| ||||||| ||||| |||||
Sbjct: 90  gattgataaagattgccgtcctctccctgagagtagtctcaagcaagccatcaagga 146



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>emb|AL117337.26|HSA393J16 Human DNA sequence from clone RP11-393J16 on chromosome 10 Contains a
              zinc finger protein pseudogene, the ZNF25 gene for zinc
              finger protein 25 (KOX 19), the 5' end of the ZNF33A gene
              for zinc finger protein 33a (KOX 31) and two CpG islands,
              complete sequence
          Length = 161452

 Score = 46.1 bits (23), Expect = 0.24
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 362    aacacccacaatttgttgaagaa 384
              |||||||||||||||||||||||
Sbjct: 140492 aacacccacaatttgttgaagaa 140514



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>gb|AF205588.1|AF205588 Homo sapiens ZNF01 and HUMORFKG1B genes, partial sequence, complete
              sequence
          Length = 312283

 Score = 46.1 bits (23), Expect = 0.24
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 362    aacacccacaatttgttgaagaa 384
              |||||||||||||||||||||||
Sbjct: 219973 aacacccacaatttgttgaagaa 219995



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>ref|NM_001063741.1| Oryza sativa (japonica cultivar-group) Os06g0227200 (Os06g0227200)
            mRNA, complete cds
          Length = 2977

 Score = 44.1 bits (22), Expect = 0.94
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                          
Query: 65   aggtcaaattcaggattgataaagattgtcttccgcttcctgagag 110
            |||| ||||| | ||| ||||||||||| ||||| |||||||||||
Sbjct: 1180 aggtgaaatttaagatagataaagattgccttccacttcctgagag 1225



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>ref|XM_001214753.1| Aspergillus terreus NIH2624 hypothetical protein (ATEG_05575) mRNA,
           complete cds
          Length = 930

 Score = 44.1 bits (22), Expect = 0.94
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 237 ccaacatgttcaagaagttcct 258
           ||||||||||||||||||||||
Sbjct: 845 ccaacatgttcaagaagttcct 866



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.94
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                             
Query: 65      aggtcaaattcaggattgataaagattgtcttccgcttcctgagag 110
               |||| ||||| | ||| ||||||||||| ||||| |||||||||||
Sbjct: 6610981 aggtgaaatttaagatagataaagattgccttccacttcctgagag 6610936



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>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0425F05
          Length = 162858

 Score = 44.1 bits (22), Expect = 0.94
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                           
Query: 65    aggtcaaattcaggattgataaagattgtcttccgcttcctgagag 110
             |||| ||||| | ||| ||||||||||| ||||| |||||||||||
Sbjct: 45107 aggtgaaatttaagatagataaagattgccttccacttcctgagag 45062



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>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0690H04
          Length = 137319

 Score = 44.1 bits (22), Expect = 0.94
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 65     aggtcaaattcaggattgataaagattgtcttccgcttcctgagag 110
              |||| ||||| | ||| ||||||||||| ||||| |||||||||||
Sbjct: 127357 aggtgaaatttaagatagataaagattgccttccacttcctgagag 127312



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>dbj|AK073517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040I03, full
            insert sequence
          Length = 2636

 Score = 44.1 bits (22), Expect = 0.94
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                          
Query: 65   aggtcaaattcaggattgataaagattgtcttccgcttcctgagag 110
            |||| ||||| | ||| ||||||||||| ||||| |||||||||||
Sbjct: 1228 aggtgaaatttaagatagataaagattgccttccacttcctgagag 1273



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>dbj|AK066970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089B21, full
            insert sequence
          Length = 2977

 Score = 44.1 bits (22), Expect = 0.94
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                          
Query: 65   aggtcaaattcaggattgataaagattgtcttccgcttcctgagag 110
            |||| ||||| | ||| ||||||||||| ||||| |||||||||||
Sbjct: 1180 aggtgaaatttaagatagataaagattgccttccacttcctgagag 1225



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>emb|CT830392.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI235I11, full
           insert sequence
          Length = 2114

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 587 tgccgcagcaggaggtcgccg 607
           |||||||||||||||||||||
Sbjct: 140 tgccgcagcaggaggtcgccg 160



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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 590     cgcagcaggaggtcgccgcgcaccc 614
               |||||||||| ||||||||||||||
Sbjct: 1518381 cgcagcaggatgtcgccgcgcaccc 1518357



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>gb|AY509869.1| Odocoileus virginianus pregnancy-associated glycoprotein 4 (PAG4)
           mRNA, complete cds
          Length = 1158

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 241 catgttcaagaagttcctcag 261
           |||||||||||||||||||||
Sbjct: 207 catgttcaagaagttcctcag 187



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>gb|AC006507.21| Mus musculus strain 129S6/SvEvTac clone rp21-580p20 map 10, complete
              sequence
          Length = 185664

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 249    agaagttcctcagacaaaccgtgtt 273
              |||||||||| ||||||||||||||
Sbjct: 110535 agaagttcctaagacaaaccgtgtt 110511



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>gb|AC140851.12| Mus musculus strain C57BL/6J clone rp23-358m4, complete sequence
          Length = 214913

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 249   agaagttcctcagacaaaccgtgtt 273
             |||||||||| ||||||||||||||
Sbjct: 97963 agaagttcctaagacaaaccgtgtt 97939



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>gb|AC069242.13| Homo sapiens 3 BAC RP11-554J1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 184664

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 524   atcaagctaatatcatttatgaaag 548
             |||||||||| ||||||||||||||
Sbjct: 58687 atcaagctaaaatcatttatgaaag 58711



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12
          Length = 27566993

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 587     tgccgcagcaggaggtcgccg 607
               |||||||||||||||||||||
Sbjct: 6805852 tgccgcagcaggaggtcgccg 6805832



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>gb|AC005818.6| Mus musculus strain 129S6/SvEvTac chromosome 10 clone rp21-411d9,
              complete sequence
          Length = 144723

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 249    agaagttcctcagacaaaccgtgtt 273
              |||||||||| ||||||||||||||
Sbjct: 144140 agaagttcctaagacaaaccgtgtt 144164



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>gb|AC018884.6| Homo sapiens BAC clone RP11-369I16 from 4, complete sequence
          Length = 166300

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 524   atcaagctaatatcatttatgaaag 548
             |||||||||| ||||||||||||||
Sbjct: 67708 atcaagctaacatcatttatgaaag 67732



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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 590    cgcagcaggaggtcgccgcgcaccc 614
              |||||||||| ||||||||||||||
Sbjct: 385143 cgcagcaggatgtcgccgcgcaccc 385167



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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 590     cgcagcaggaggtcgccgcgcaccc 614
               |||||||||| ||||||||||||||
Sbjct: 2853127 cgcagcaggatgtcgccgcgcaccc 2853103



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>emb|BX324162.8| Zebrafish DNA sequence from clone DKEY-95O3 in linkage group 15,
             complete sequence
          Length = 155540

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 358   atgcaacacccacaatttgtt 378
             |||||||||||||||||||||
Sbjct: 32914 atgcaacacccacaatttgtt 32894



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>gb|AC117457.11| Homo sapiens 3 BAC RP11-385J1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 204899

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 557   gtgatgcattccttcctagag 577
             |||||||||||||||||||||
Sbjct: 62568 gtgatgcattccttcctagag 62548



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>emb|AL713935.5|CNS07YPG Oryza sativa chromosome 12, . BAC OJ1427_C06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 88558

 Score = 42.1 bits (21), Expect = 3.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 587   tgccgcagcaggaggtcgccg 607
             |||||||||||||||||||||
Sbjct: 12676 tgccgcagcaggaggtcgccg 12696


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 164,424,601
Number of extensions: 8477683
Number of successful extensions: 200675
Number of sequences better than 10.0: 29
Number of HSP's gapped: 200675
Number of HSP's successfully gapped: 29
Length of query: 981
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 958
Effective length of database: 18,503,978,556
Effective search space: 17726811456648
Effective search space used: 17726811456648
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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