| Clone Name | FLbaf76p08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001054646.1| Oryza sativa (japonica cultivar-group) Os02g0745600 (Os02g0745600) mRNA, complete cds Length = 2017 Score = 127 bits (64), Expect = 8e-26 Identities = 91/100 (91%) Strand = Plus / Plus Query: 65 aggtcaaattcaggattgataaagattgtcttccgcttcctgagagtagtttcaagcatg 124 |||||||||| | | |||| |||||||| ||||| ||||| ||||||||||||||||||| Sbjct: 716 aggtcaaatttaaggttgacaaagattgccttcctcttccggagagtagtttcaagcatg 775 Query: 125 ccattaaggagaactacaattcaaagggaagattcaccca 164 |||||||||||||||||||||||||||||| |||||||| Sbjct: 776 ccattaaggagaactacaattcaaagggaaagttcaccca 815
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 127 bits (64), Expect = 8e-26 Identities = 91/100 (91%) Strand = Plus / Plus Query: 65 aggtcaaattcaggattgataaagattgtcttccgcttcctgagagtagtttcaagcatg 124 |||||||||| | | |||| |||||||| ||||| ||||| ||||||||||||||||||| Sbjct: 31314136 aggtcaaatttaaggttgacaaagattgccttcctcttccggagagtagtttcaagcatg 31314195 Query: 125 ccattaaggagaactacaattcaaagggaagattcaccca 164 |||||||||||||||||||||||||||||| |||||||| Sbjct: 31314196 ccattaaggagaactacaattcaaagggaaagttcaccca 31314235
>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1118_G04 Length = 134464 Score = 127 bits (64), Expect = 8e-26 Identities = 91/100 (91%) Strand = Plus / Plus Query: 65 aggtcaaattcaggattgataaagattgtcttccgcttcctgagagtagtttcaagcatg 124 |||||||||| | | |||| |||||||| ||||| ||||| ||||||||||||||||||| Sbjct: 84004 aggtcaaatttaaggttgacaaagattgccttcctcttccggagagtagtttcaagcatg 84063 Query: 125 ccattaaggagaactacaattcaaagggaagattcaccca 164 |||||||||||||||||||||||||||||| |||||||| Sbjct: 84064 ccattaaggagaactacaattcaaagggaaagttcaccca 84103
>dbj|AK103517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131H10, full insert sequence Length = 2019 Score = 127 bits (64), Expect = 8e-26 Identities = 91/100 (91%) Strand = Plus / Plus Query: 65 aggtcaaattcaggattgataaagattgtcttccgcttcctgagagtagtttcaagcatg 124 |||||||||| | | |||| |||||||| ||||| ||||| ||||||||||||||||||| Sbjct: 718 aggtcaaatttaaggttgacaaagattgccttcctcttccggagagtagtttcaagcatg 777 Query: 125 ccattaaggagaactacaattcaaagggaagattcaccca 164 |||||||||||||||||||||||||||||| |||||||| Sbjct: 778 ccattaaggagaactacaattcaaagggaaagttcaccca 817
>gb|AY107779.1| Zea mays PCO127499 mRNA sequence Length = 1395 Score = 65.9 bits (33), Expect = 3e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 78 gattgataaagattgtcttccgcttcctgagagtagtttcaagcatgccattaaggagaa 137 ||||||||||||||| | ||| || |||||||||||| ||||||| ||||| ||||| || Sbjct: 273 gattgataaagattgccgtcctctccctgagagtagtctcaagcaagccatcaaggaaaa 332 Query: 138 ctacaattcaaag 150 |||||| ||||| Sbjct: 333 ttacaatgcaaag 345
>gb|BT016250.1| Zea mays clone Contig83 mRNA sequence Length = 1277 Score = 58.0 bits (29), Expect = 6e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 78 gattgataaagattgtcttccgcttcctgagagtagtttcaagcatgccattaagga 134 ||||||||||||||| | ||| || |||||||||||| ||||||| ||||| ||||| Sbjct: 90 gattgataaagattgccgtcctctccctgagagtagtctcaagcaagccatcaagga 146
>emb|AL117337.26|HSA393J16 Human DNA sequence from clone RP11-393J16 on chromosome 10 Contains a zinc finger protein pseudogene, the ZNF25 gene for zinc finger protein 25 (KOX 19), the 5' end of the ZNF33A gene for zinc finger protein 33a (KOX 31) and two CpG islands, complete sequence Length = 161452 Score = 46.1 bits (23), Expect = 0.24 Identities = 23/23 (100%) Strand = Plus / Plus Query: 362 aacacccacaatttgttgaagaa 384 ||||||||||||||||||||||| Sbjct: 140492 aacacccacaatttgttgaagaa 140514
>gb|AF205588.1|AF205588 Homo sapiens ZNF01 and HUMORFKG1B genes, partial sequence, complete sequence Length = 312283 Score = 46.1 bits (23), Expect = 0.24 Identities = 23/23 (100%) Strand = Plus / Plus Query: 362 aacacccacaatttgttgaagaa 384 ||||||||||||||||||||||| Sbjct: 219973 aacacccacaatttgttgaagaa 219995
>ref|NM_001063741.1| Oryza sativa (japonica cultivar-group) Os06g0227200 (Os06g0227200) mRNA, complete cds Length = 2977 Score = 44.1 bits (22), Expect = 0.94 Identities = 40/46 (86%) Strand = Plus / Plus Query: 65 aggtcaaattcaggattgataaagattgtcttccgcttcctgagag 110 |||| ||||| | ||| ||||||||||| ||||| ||||||||||| Sbjct: 1180 aggtgaaatttaagatagataaagattgccttccacttcctgagag 1225
>ref|XM_001214753.1| Aspergillus terreus NIH2624 hypothetical protein (ATEG_05575) mRNA, complete cds Length = 930 Score = 44.1 bits (22), Expect = 0.94 Identities = 22/22 (100%) Strand = Plus / Plus Query: 237 ccaacatgttcaagaagttcct 258 |||||||||||||||||||||| Sbjct: 845 ccaacatgttcaagaagttcct 866
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 44.1 bits (22), Expect = 0.94 Identities = 40/46 (86%) Strand = Plus / Minus Query: 65 aggtcaaattcaggattgataaagattgtcttccgcttcctgagag 110 |||| ||||| | ||| ||||||||||| ||||| ||||||||||| Sbjct: 6610981 aggtgaaatttaagatagataaagattgccttccacttcctgagag 6610936
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0425F05 Length = 162858 Score = 44.1 bits (22), Expect = 0.94 Identities = 40/46 (86%) Strand = Plus / Minus Query: 65 aggtcaaattcaggattgataaagattgtcttccgcttcctgagag 110 |||| ||||| | ||| ||||||||||| ||||| ||||||||||| Sbjct: 45107 aggtgaaatttaagatagataaagattgccttccacttcctgagag 45062
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0690H04 Length = 137319 Score = 44.1 bits (22), Expect = 0.94 Identities = 40/46 (86%) Strand = Plus / Minus Query: 65 aggtcaaattcaggattgataaagattgtcttccgcttcctgagag 110 |||| ||||| | ||| ||||||||||| ||||| ||||||||||| Sbjct: 127357 aggtgaaatttaagatagataaagattgccttccacttcctgagag 127312
>dbj|AK073517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040I03, full insert sequence Length = 2636 Score = 44.1 bits (22), Expect = 0.94 Identities = 40/46 (86%) Strand = Plus / Plus Query: 65 aggtcaaattcaggattgataaagattgtcttccgcttcctgagag 110 |||| ||||| | ||| ||||||||||| ||||| ||||||||||| Sbjct: 1228 aggtgaaatttaagatagataaagattgccttccacttcctgagag 1273
>dbj|AK066970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089B21, full insert sequence Length = 2977 Score = 44.1 bits (22), Expect = 0.94 Identities = 40/46 (86%) Strand = Plus / Plus Query: 65 aggtcaaattcaggattgataaagattgtcttccgcttcctgagag 110 |||| ||||| | ||| ||||||||||| ||||| ||||||||||| Sbjct: 1180 aggtgaaatttaagatagataaagattgccttccacttcctgagag 1225
>emb|CT830392.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI235I11, full insert sequence Length = 2114 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 587 tgccgcagcaggaggtcgccg 607 ||||||||||||||||||||| Sbjct: 140 tgccgcagcaggaggtcgccg 160
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 590 cgcagcaggaggtcgccgcgcaccc 614 |||||||||| |||||||||||||| Sbjct: 1518381 cgcagcaggatgtcgccgcgcaccc 1518357
>gb|AY509869.1| Odocoileus virginianus pregnancy-associated glycoprotein 4 (PAG4) mRNA, complete cds Length = 1158 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 catgttcaagaagttcctcag 261 ||||||||||||||||||||| Sbjct: 207 catgttcaagaagttcctcag 187
>gb|AC006507.21| Mus musculus strain 129S6/SvEvTac clone rp21-580p20 map 10, complete sequence Length = 185664 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 249 agaagttcctcagacaaaccgtgtt 273 |||||||||| |||||||||||||| Sbjct: 110535 agaagttcctaagacaaaccgtgtt 110511
>gb|AC140851.12| Mus musculus strain C57BL/6J clone rp23-358m4, complete sequence Length = 214913 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 249 agaagttcctcagacaaaccgtgtt 273 |||||||||| |||||||||||||| Sbjct: 97963 agaagttcctaagacaaaccgtgtt 97939
>gb|AC069242.13| Homo sapiens 3 BAC RP11-554J1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184664 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 524 atcaagctaatatcatttatgaaag 548 |||||||||| |||||||||||||| Sbjct: 58687 atcaagctaaaatcatttatgaaag 58711
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 587 tgccgcagcaggaggtcgccg 607 ||||||||||||||||||||| Sbjct: 6805852 tgccgcagcaggaggtcgccg 6805832
>gb|AC005818.6| Mus musculus strain 129S6/SvEvTac chromosome 10 clone rp21-411d9, complete sequence Length = 144723 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 249 agaagttcctcagacaaaccgtgtt 273 |||||||||| |||||||||||||| Sbjct: 144140 agaagttcctaagacaaaccgtgtt 144164
>gb|AC018884.6| Homo sapiens BAC clone RP11-369I16 from 4, complete sequence Length = 166300 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 524 atcaagctaatatcatttatgaaag 548 |||||||||| |||||||||||||| Sbjct: 67708 atcaagctaacatcatttatgaaag 67732
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 590 cgcagcaggaggtcgccgcgcaccc 614 |||||||||| |||||||||||||| Sbjct: 385143 cgcagcaggatgtcgccgcgcaccc 385167
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 3.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 590 cgcagcaggaggtcgccgcgcaccc 614 |||||||||| |||||||||||||| Sbjct: 2853127 cgcagcaggatgtcgccgcgcaccc 2853103
>emb|BX324162.8| Zebrafish DNA sequence from clone DKEY-95O3 in linkage group 15, complete sequence Length = 155540 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 atgcaacacccacaatttgtt 378 ||||||||||||||||||||| Sbjct: 32914 atgcaacacccacaatttgtt 32894
>gb|AC117457.11| Homo sapiens 3 BAC RP11-385J1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 204899 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 557 gtgatgcattccttcctagag 577 ||||||||||||||||||||| Sbjct: 62568 gtgatgcattccttcctagag 62548
>emb|AL713935.5|CNS07YPG Oryza sativa chromosome 12, . BAC OJ1427_C06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 88558 Score = 42.1 bits (21), Expect = 3.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 587 tgccgcagcaggaggtcgccg 607 ||||||||||||||||||||| Sbjct: 12676 tgccgcagcaggaggtcgccg 12696 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 164,424,601 Number of extensions: 8477683 Number of successful extensions: 200675 Number of sequences better than 10.0: 29 Number of HSP's gapped: 200675 Number of HSP's successfully gapped: 29 Length of query: 981 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 958 Effective length of database: 18,503,978,556 Effective search space: 17726811456648 Effective search space used: 17726811456648 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)