ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf79k04 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | AK121541:Os05g0452600 | 107 | 6e-24 | 2 | Os05g0513500:Os05g0513500 | 89 | 1e-18 | 3 | Os05g0452700:Os05g0452700 | 42 | 2e-04 | 4 | Os12g0577000:Os12g0577000 | 28 | 2.7 | 5 | AK100262:Os08g0178300 | 28 | 2.7 | 6 | AK068383:Os08g0178300 | 28 | 2.7 | 7 | AK106604:Os03g0712400 | 28 | 3.5 | 8 | AK064962:Os04g0683100 | 28 | 3.5 | 9 | AK072418:Os10g0422800 | 28 | 4.6 | 10 | AK063180:Os09g0438100 | 28 | 4.6 | 11 | AK121135:Os01g0923700 | 27 | 6.0 | 12 | AK106807:Os09g0567600 | 27 | 6.0 | 13 | AK066325:Os01g0150000 | 27 | 6.0 | 14 | AK060948:Os01g0150000 | 27 | 6.0 | 15 | AK110053:Os04g0472900 | 27 | 7.8 | 16 | AK108734:Os12g0149000 | 27 | 7.8 | 17 | AK108650:Os02g0673000 | 27 | 7.8 |
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>AK121541:Os05g0452600 | Length = 57 Score = 107 bits (266), Expect = 6e-24 Identities = 52/52 (100%), Positives = 52/52 (100%) Frame = +3 Query: 141 GKAKRASIFIRLVSAAGTGFFYVKRKNPRRITEKLEFRKYDPRVNKHVLFTE 296 GKAKRASIFIRLVSAAGTGFFYVKRKNPRRITEKLEFRKYDPRVNKHVLFTE Sbjct: 2 GKAKRASIFIRLVSAAGTGFFYVKRKNPRRITEKLEFRKYDPRVNKHVLFTE 53
>Os05g0513500:Os05g0513500 | Length = 139 Score = 89.4 bits (220), Expect = 1e-18 Identities = 43/44 (97%), Positives = 44/44 (100%) Frame = +3 Query: 141 GKAKRASIFIRLVSAAGTGFFYVKRKNPRRITEKLEFRKYDPRV 272 GKAKRASIFIRLVSAAGTGFFYVKRKNPRRITEKLEFRKYDPR+ Sbjct: 85 GKAKRASIFIRLVSAAGTGFFYVKRKNPRRITEKLEFRKYDPRL 128
>Os05g0452700:Os05g0452700 | Length = 110 Score = 42.0 bits (97), Expect = 2e-04 Identities = 18/21 (85%), Positives = 21/21 (100%) Frame = -2 Query: 202 KNPVPAADTSLMKMDARFAFP 140 KNPVPAA+TSL+K+DARFAFP Sbjct: 40 KNPVPAAETSLIKIDARFAFP 60
>Os12g0577000:Os12g0577000 | Length = 980 Score = 28.5 bits (62), Expect = 2.7 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Frame = +2 Query: 128 GRDGREGEAGVHLHQARVGRR--HGVLLREAQEPSPDHGEARVQEVRPPRQQARPLHGGQ 301 G + EG +G + R R V LREA P+HG+ RV+ + ++ L Sbjct: 105 GGEEEEGSSGKKRTRTRTRTRTRRSVALREAMAGLPEHGDGRVRYLVDTFERLLSLSSDP 164 Query: 302 DEVTPRAR 325 E + R R Sbjct: 165 GEQSRRRR 172
>AK100262:Os08g0178300 | Length = 441 Score = 28.5 bits (62), Expect = 2.7 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 11/53 (20%) Frame = +2 Query: 206 REAQE-PSPDHGEARVQEVRPPRQQAR----------PLHGGQDEVTPRARAQ 331 R+ Q+ PSPD +A +++ PPRQ+ R + GG D+++P +++ Sbjct: 152 RQRQDTPSPDPRDAAGKDLSPPRQRRRRQDTPSPKGSEVAGGHDDLSPPRKSR 204
>AK068383:Os08g0178300 | Length = 552 Score = 28.5 bits (62), Expect = 2.7 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 11/53 (20%) Frame = +2 Query: 206 REAQE-PSPDHGEARVQEVRPPRQQAR----------PLHGGQDEVTPRARAQ 331 R+ Q+ PSPD +A +++ PPRQ+ R + GG D+++P +++ Sbjct: 152 RQRQDTPSPDPRDAAGKDLSPPRQRRRRQDTPSPKGSEVAGGHDDLSPPRKSR 204
>AK106604:Os03g0712400 | Length = 225 Score = 28.1 bits (61), Expect = 3.5 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 9/48 (18%) Frame = +2 Query: 221 PSPDHGEARVQEV---------RPPRQQARPLHGGQDEVTPRARAQGL 337 PS H R++E+ R P+QQA L G D+ + A+GL Sbjct: 173 PSMPHVVLRIEEIKKSSERLEGRDPQQQASNLEAGDDQTSKPESAEGL 220
>AK064962:Os04g0683100 | Length = 259 Score = 28.1 bits (61), Expect = 3.5 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = +1 Query: 22 RQNPSRRAAPRTGKGRRRSGEPLLVVES 105 RQ RRA PR G+G R GE +V S Sbjct: 35 RQEGGRRARPRWGQGARGEGEGKMVSSS 62
>AK072418:Os10g0422800 | Length = 143 Score = 27.7 bits (60), Expect = 4.6 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Frame = +2 Query: 128 GRDGREGEAGVHLHQARVGRRHG--VLLREA--QEPSPDHGEARVQEVRPPRQQ-ARPL 289 GR G+EG A GRR G VLLR+ +EP + PP Q+ RPL Sbjct: 68 GRGGQEGRRRRRRRAAAGGRRQGPHVLLRQVLPEEPRLPRRRRHAPDAPPPLQRHLRPL 126
>AK063180:Os09g0438100 | Length = 231 Score = 27.7 bits (60), Expect = 4.6 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -3 Query: 159 TPASPSRPSLPAKVKEVAGFDDE 91 TP SPS PS P+KV+ A + E Sbjct: 96 TPTSPSEPSTPSKVRFTAYYGGE 118
>AK121135:Os01g0923700 | Length = 870 Score = 27.3 bits (59), Expect = 6.0 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = +2 Query: 206 REAQEPSPDHGEARVQEVRPPRQQARPLHGGQD 304 ++ P P G+A V E+R P ++ P+ QD Sbjct: 55 KKQSSPGPGPGDAAVAEIREPAEEYAPVIFAQD 87
>AK106807:Os09g0567600 | Length = 175 Score = 27.3 bits (59), Expect = 6.0 Identities = 18/36 (50%), Positives = 21/36 (58%) Frame = -1 Query: 287 EDVLVDAGVVLPELELLRDPARVLALHVEEPRAGGR 180 EDVL DAG V P ++ P VL + VEE GGR Sbjct: 11 EDVLHDAGDVDPVEVVV--PVDVLGVEVEEGGGGGR 44
>AK066325:Os01g0150000 | Length = 284 Score = 27.3 bits (59), Expect = 6.0 Identities = 13/36 (36%), Positives = 16/36 (44%) Frame = +3 Query: 366 YCNEPQRGASSVLARIVFFSFCLYCRCAELICSFLL 473 YCN P S L + F F + C+ A C LL Sbjct: 156 YCNHPLYTPVSELQMKIGFGFGILCQIANFYCHILL 191
>AK060948:Os01g0150000 | Length = 310 Score = 27.3 bits (59), Expect = 6.0 Identities = 13/36 (36%), Positives = 16/36 (44%) Frame = +3 Query: 366 YCNEPQRGASSVLARIVFFSFCLYCRCAELICSFLL 473 YCN P S L + F F + C+ A C LL Sbjct: 182 YCNHPLYTPVSELQMKIGFGFGILCQIANFYCHILL 217
>AK110053:Os04g0472900 | Length = 855 Score = 26.9 bits (58), Expect = 7.8 Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 10/75 (13%) Frame = +2 Query: 128 GRDGREGEAGVHLHQARVGRRHGVLLRE---AQEPSPDHGEARVQEVRPPRQQ------- 277 G GR GEA V + + +VG GV LR + SP E V V P + Sbjct: 289 GDKGRHGEAFVVV-KVQVG---GVTLRTKPCCRPTSPSWNEELVFVVAEPFDEPAVLVIE 344 Query: 278 ARPLHGGQDEVTPRA 322 AR H G+DE+ RA Sbjct: 345 ARAAHPGKDEIVSRA 359
>AK108734:Os12g0149000 | Length = 359 Score = 26.9 bits (58), Expect = 7.8 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 5/74 (6%) Frame = +2 Query: 128 GRDGREGEAGVHLHQARVGRRHGVLLREAQEPSPDHGEARVQEVR--PPRQQARPLHG-- 295 GR G GE GV + R RR G + E + + G A E++ P + RP G Sbjct: 216 GRGGARGERGVRAWRRR-RRRRGRAVGEHRREARGAGAAAPVELQGEPDGVRRRPARGRD 274 Query: 296 -GQDEVTPRARAQG 334 G V ARA G Sbjct: 275 VGPPRVVVPARAAG 288
>AK108650:Os02g0673000 | Length = 266 Score = 26.9 bits (58), Expect = 7.8 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Frame = +2 Query: 158 VHLHQARVGRRHGVLLREAQEPSPDHGEARVQEVRPPRQQARPLHGGQDE---VTPRARA 328 +H H VGR +Q HGEARV+ R R HGG + V RAR Sbjct: 72 LHAHLPGVGRPGAGPPHRSQ-----HGEARVRRGGLRRGLLRRPHGGGGQVGGVQERARL 126 Query: 329 QGL 337 QG+ Sbjct: 127 QGV 129 Database: orf_amino.fa.out Posted date: Jul 26, 2007 11:37 AM Number of letters in database: 15,399,855 Number of sequences in database: 40,041 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 40041 Number of Hits to DB: 12,798,162 Number of extensions: 272903 Number of successful extensions: 1094 Number of sequences better than 10.0: 17 Number of HSP's gapped: 1094 Number of HSP's successfully gapped: 17 Length of query: 171 Length of database: 15,399,855 Length adjustment: 93 Effective length of query: 78 Effective length of database: 11,676,042 Effective search space: 910731276 Effective search space used: 910731276 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
