| Clone Name | FLbaf79k03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ245914.1| Zea mays clone 22346 mRNA sequence Length = 816 Score = 381 bits (192), Expect = e-102 Identities = 318/360 (88%) Strand = Plus / Plus Query: 115 cctcgccgcgcgatccggcgccgaggtcatcaccctcaccgaagagaccttctccgacaa 174 |||| ||||||| ||| | ||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 143 cctcaccgcgcgctccagtgccgaagtcatcaccctcaccgaagagaccttctcggacaa 202 Query: 175 gataaaggagaaggacacggtgtggtttgtgcaattctgcgtcccttggtgtaagcactg 234 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 203 gataaaggagaaggacacggtgtggtttgtgcaattctgcgtcccctggtgtaaacactg 262 Query: 235 caagagcctaggaactctttgggaggacctcggaaaggtcatcgaaggtacagatgaaat 294 ||||| ||| ||||| || ||||||||||| |||||||| || |||||| | |||||||| Sbjct: 263 caagaaccttggaacactatgggaggacctgggaaaggttatggaaggtgcggatgaaat 322 Query: 295 tgaaatcggaaaagttgattgcggtgcaagcaaaccagtctgctcaaaggtggacattca 354 ||| || || ||||||| || |||| ||||||||||| ||||||||||| || || || Sbjct: 323 tgagattgggcaagttgactgtggtgtcagcaaaccagtatgctcaaaggtcgatataca 382 Query: 355 ttcatacccaacattcaaggtattctatgatggcgaagaagttgcaaaatataaagggcc 414 ||| ||||||||||||||||| || ||||| ||||||||||| | |||||||||||| || Sbjct: 383 ttcctacccaacattcaaggtgttttatgaaggcgaagaagtagtaaaatataaaggacc 442 Query: 415 tagggatgtggaatctctcaagaattttgtgttgaacgaagctgagaaagcaggagaggc 474 ||||||||||||||| || ||||| || |||||||| ||||||||||||||||| ||||| Sbjct: 443 tagggatgtggaatcgctgaagaacttcgtgttgaatgaagctgagaaagcaggcgaggc 502
>gb|AY739291.1| Zea mays protein disulfide isomerase (PDIL5-1) mRNA, complete cds Length = 781 Score = 381 bits (192), Expect = e-102 Identities = 318/360 (88%) Strand = Plus / Plus Query: 115 cctcgccgcgcgatccggcgccgaggtcatcaccctcaccgaagagaccttctccgacaa 174 |||| ||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 107 cctcaccgcgcgctccagtgccgaagtcatcaccctcaccgaagagaccttctccgacaa 166 Query: 175 gataaaggagaaggacacggtgtggtttgtgcaattctgcgtcccttggtgtaagcactg 234 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 167 gataaaggagaaggacacggtgtggtttgtgcaattctgcgtcccctggtgtaaacactg 226 Query: 235 caagagcctaggaactctttgggaggacctcggaaaggtcatcgaaggtacagatgaaat 294 ||||| ||| ||||| || ||||||||||| |||||||| || |||||| | |||||||| Sbjct: 227 caagaaccttggaacactatgggaggacctgggaaaggttatggaaggtgcggatgaaat 286 Query: 295 tgaaatcggaaaagttgattgcggtgcaagcaaaccagtctgctcaaaggtggacattca 354 ||| || || ||||||| || |||| ||||||||||| ||||||||||| || || || Sbjct: 287 tgagattgggcaagttgactgtggtgtcagcaaaccagtatgctcaaaggtcgatataca 346 Query: 355 ttcatacccaacattcaaggtattctatgatggcgaagaagttgcaaaatataaagggcc 414 || ||||||||||||||||| || ||||| ||||||||||| | |||||||||||| || Sbjct: 347 ctcctacccaacattcaaggtgttttatgaaggcgaagaagtagtaaaatataaaggacc 406 Query: 415 tagggatgtggaatctctcaagaattttgtgttgaacgaagctgagaaagcaggagaggc 474 ||||||||||||||| || ||||| || |||||||| ||||||||||||||||| ||||| Sbjct: 407 tagggatgtggaatcgctgaagaacttcgtgttgaatgaagctgagaaagcaggcgaggc 466
>gb|AY104619.1| Zea mays PCO130768 mRNA sequence Length = 916 Score = 381 bits (192), Expect = e-102 Identities = 318/360 (88%) Strand = Plus / Plus Query: 115 cctcgccgcgcgatccggcgccgaggtcatcaccctcaccgaagagaccttctccgacaa 174 |||| ||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 165 cctcaccgcgcgctccagtgccgaagtcatcaccctcaccgaagagaccttctccgacaa 224 Query: 175 gataaaggagaaggacacggtgtggtttgtgcaattctgcgtcccttggtgtaagcactg 234 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 225 gataaaggagaaggacacggtgtggtttgtgcaattctgcgtcccctggtgtaaacactg 284 Query: 235 caagagcctaggaactctttgggaggacctcggaaaggtcatcgaaggtacagatgaaat 294 ||||| ||| ||||| || ||||||||||| |||||||| || |||||| | |||||||| Sbjct: 285 caagaaccttggaacactatgggaggacctgggaaaggttatggaaggtgcggatgaaat 344 Query: 295 tgaaatcggaaaagttgattgcggtgcaagcaaaccagtctgctcaaaggtggacattca 354 ||| || || ||||||| || |||| ||||||||||| ||||||||||| || || || Sbjct: 345 tgagattgggcaagttgactgtggtgtcagcaaaccagtatgctcaaaggtcgatataca 404 Query: 355 ttcatacccaacattcaaggtattctatgatggcgaagaagttgcaaaatataaagggcc 414 || ||||||||||||||||| || ||||| ||||||||||| | |||||||||||| || Sbjct: 405 ctcctacccaacattcaaggtgttttatgaaggcgaagaagtagtaaaatataaaggacc 464 Query: 415 tagggatgtggaatctctcaagaattttgtgttgaacgaagctgagaaagcaggagaggc 474 ||||||||||||||| || ||||| || |||||||| ||||||||||||||||| ||||| Sbjct: 465 tagggatgtggaatcgctgaagaacttcgtgttgaatgaagctgagaaagcaggcgaggc 524
>ref|NM_001056316.1| Oryza sativa (japonica cultivar-group) Os03g0287900 (Os03g0287900) mRNA, complete cds Length = 686 Score = 289 bits (146), Expect = 7e-75 Identities = 302/354 (85%) Strand = Plus / Plus Query: 112 ggccctcgccgcgcgatccggcgccgaggtcatcaccctcaccgaagagaccttctccga 171 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 113 ggccctagccgcgcgatccggcgccgaggtcatcaccctcaccgaggagaccttctccga 172 Query: 172 caagataaaggagaaggacacggtgtggtttgtgcaattctgcgtcccttggtgtaagca 231 ||||||||||||||| |||||||| ||||||||| | |||||||| || ||||| || || Sbjct: 173 caagataaaggagaaagacacggtatggtttgtgaagttctgcgttccatggtgcaaaca 232 Query: 232 ctgcaagagcctaggaactctttgggaggacctcggaaaggtcatcgaaggtacagatga 291 ||| |||| ||| ||||| |||||||||||| | |||||||| || |||||| | ||||| Sbjct: 233 ctgtaagaaccttggaacactttgggaggacttgggaaaggttatggaaggtgcggatga 292 Query: 292 aattgaaatcggaaaagttgattgcggtgcaagcaaaccagtctgctcaaaggtggacat 351 ||| || || || |||| || || |||| ||||||||||| |||||||||||||| || Sbjct: 293 aatagagatagggcaagtggactgtggtgttagcaaaccagtatgctcaaaggtggatat 352 Query: 352 tcattcatacccaacattcaaggtattctatgatggcgaagaagttgcaaaatataaagg 411 ||||| ||||| ||||||||||| || ||||| || ||||| ||||||||||||||||| Sbjct: 353 ccattcgtaccccacattcaaggtgttttatgaaggtgaagaggttgcaaaatataaagg 412 Query: 412 gcctagggatgtggaatctctcaagaattttgtgttgaacgaagctgagaaagc 465 || || ||||||| || || ||||||||||| | | | ||||| |||||||| Sbjct: 413 cccaagaaatgtggagtcactgaagaattttgtttcggatgaagccgagaaagc 466
>dbj|AK063663.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-C07, full insert sequence Length = 686 Score = 289 bits (146), Expect = 7e-75 Identities = 302/354 (85%) Strand = Plus / Plus Query: 112 ggccctcgccgcgcgatccggcgccgaggtcatcaccctcaccgaagagaccttctccga 171 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 113 ggccctagccgcgcgatccggcgccgaggtcatcaccctcaccgaggagaccttctccga 172 Query: 172 caagataaaggagaaggacacggtgtggtttgtgcaattctgcgtcccttggtgtaagca 231 ||||||||||||||| |||||||| ||||||||| | |||||||| || ||||| || || Sbjct: 173 caagataaaggagaaagacacggtatggtttgtgaagttctgcgttccatggtgcaaaca 232 Query: 232 ctgcaagagcctaggaactctttgggaggacctcggaaaggtcatcgaaggtacagatga 291 ||| |||| ||| ||||| |||||||||||| | |||||||| || |||||| | ||||| Sbjct: 233 ctgtaagaaccttggaacactttgggaggacttgggaaaggttatggaaggtgcggatga 292 Query: 292 aattgaaatcggaaaagttgattgcggtgcaagcaaaccagtctgctcaaaggtggacat 351 ||| || || || |||| || || |||| ||||||||||| |||||||||||||| || Sbjct: 293 aatagagatagggcaagtggactgtggtgttagcaaaccagtatgctcaaaggtggatat 352 Query: 352 tcattcatacccaacattcaaggtattctatgatggcgaagaagttgcaaaatataaagg 411 ||||| ||||| ||||||||||| || ||||| || ||||| ||||||||||||||||| Sbjct: 353 ccattcgtaccccacattcaaggtgttttatgaaggtgaagaggttgcaaaatataaagg 412 Query: 412 gcctagggatgtggaatctctcaagaattttgtgttgaacgaagctgagaaagc 465 || || ||||||| || || ||||||||||| | | | ||||| |||||||| Sbjct: 413 cccaagaaatgtggagtcactgaagaattttgtttcggatgaagccgagaaagc 466
>gb|BT016382.1| Zea mays clone Contig215 mRNA sequence Length = 626 Score = 190 bits (96), Expect = 5e-45 Identities = 189/220 (85%) Strand = Plus / Plus Query: 255 gggaggacctcggaaaggtcatcgaaggtacagatgaaattgaaatcggaaaagttgatt 314 |||||||||| |||||||| || |||||| | ||||||||||| || || ||||||| | Sbjct: 1 gggaggacctgggaaaggttatggaaggtgcggatgaaattgagattgggcaagttgact 60 Query: 315 gcggtgcaagcaaaccagtctgctcaaaggtggacattcattcatacccaacattcaagg 374 | |||| ||||||||||| ||||||||||| || || || || |||||||||||||||| Sbjct: 61 gtggtgtcagcaaaccagtatgctcaaaggtcgatatacactcctacccaacattcaagg 120 Query: 375 tattctatgatggcgaagaagttgcaaaatataaagggcctagggatgtggaatctctca 434 | || ||||| ||||||||||| | |||||||||||| ||||||||||||||||| || | Sbjct: 121 tgttttatgaaggcgaagaagtagtaaaatataaaggacctagggatgtggaatcgctga 180 Query: 435 agaattttgtgttgaacgaagctgagaaagcaggagaggc 474 |||| || |||||||| ||||||||||||||||| ||||| Sbjct: 181 agaacttcgtgttgaatgaagctgagaaagcaggcgaggc 220
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 119 bits (60), Expect = 2e-23 Identities = 147/176 (83%) Strand = Plus / Minus Query: 236 aagagcctaggaactctttgggaggacctcggaaaggtcatcgaaggtacagatgaaatt 295 |||| ||| ||||| |||||||||||| | |||||||| || |||||| | |||||||| Sbjct: 9924337 aagaaccttggaacactttgggaggacttgggaaaggttatggaaggtgcggatgaaata 9924278 Query: 296 gaaatcggaaaagttgattgcggtgcaagcaaaccagtctgctcaaaggtggacattcat 355 || || || |||| || || |||| ||||||||||| |||||||||||||| || ||| Sbjct: 9924277 gagatagggcaagtggactgtggtgttagcaaaccagtatgctcaaaggtggatatccat 9924218 Query: 356 tcatacccaacattcaaggtattctatgatggcgaagaagttgcaaaatataaagg 411 || ||||| ||||||||||| || ||||| || ||||| ||||||||||||||||| Sbjct: 9924217 tcgtaccccacattcaaggtgttttatgaaggtgaagaggttgcaaaatataaagg 9924162 Score = 111 bits (56), Expect = 4e-21 Identities = 62/64 (96%) Strand = Plus / Minus Query: 112 ggccctcgccgcgcgatccggcgccgaggtcatcaccctcaccgaagagaccttctccga 171 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 9925123 ggccctagccgcgcgatccggcgccgaggtcatcaccctcaccgaggagaccttctccga 9925064 Query: 172 caag 175 |||| Sbjct: 9925063 caag 9925060 Score = 58.0 bits (29), Expect = 5e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 174 agataaaggagaaggacacggtgtggtttgtgcaattctgcgtcccttggtgtaagcact 233 ||||||||||||| |||||||| ||||||||| | |||||||| || ||||| || |||| Sbjct: 9924497 agataaaggagaaagacacggtatggtttgtgaagttctgcgttccatggtgcaaacact 9924438 Query: 234 g 234 | Sbjct: 9924437 g 9924437
>gb|AC137074.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0022M22, from chromosome 3, complete sequence Length = 124166 Score = 119 bits (60), Expect = 2e-23 Identities = 147/176 (83%) Strand = Plus / Minus Query: 236 aagagcctaggaactctttgggaggacctcggaaaggtcatcgaaggtacagatgaaatt 295 |||| ||| ||||| |||||||||||| | |||||||| || |||||| | |||||||| Sbjct: 88605 aagaaccttggaacactttgggaggacttgggaaaggttatggaaggtgcggatgaaata 88546 Query: 296 gaaatcggaaaagttgattgcggtgcaagcaaaccagtctgctcaaaggtggacattcat 355 || || || |||| || || |||| ||||||||||| |||||||||||||| || ||| Sbjct: 88545 gagatagggcaagtggactgtggtgttagcaaaccagtatgctcaaaggtggatatccat 88486 Query: 356 tcatacccaacattcaaggtattctatgatggcgaagaagttgcaaaatataaagg 411 || ||||| ||||||||||| || ||||| || ||||| ||||||||||||||||| Sbjct: 88485 tcgtaccccacattcaaggtgttttatgaaggtgaagaggttgcaaaatataaagg 88430 Score = 111 bits (56), Expect = 4e-21 Identities = 62/64 (96%) Strand = Plus / Minus Query: 112 ggccctcgccgcgcgatccggcgccgaggtcatcaccctcaccgaagagaccttctccga 171 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 89391 ggccctagccgcgcgatccggcgccgaggtcatcaccctcaccgaggagaccttctccga 89332 Query: 172 caag 175 |||| Sbjct: 89331 caag 89328 Score = 58.0 bits (29), Expect = 5e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 174 agataaaggagaaggacacggtgtggtttgtgcaattctgcgtcccttggtgtaagcact 233 ||||||||||||| |||||||| ||||||||| | |||||||| || ||||| || |||| Sbjct: 88765 agataaaggagaaagacacggtatggtttgtgaagttctgcgttccatggtgcaaacact 88706 Query: 234 g 234 | Sbjct: 88705 g 88705
>gb|AC150891.3| Medicago truncatula chromosome 2 BAC clone mth2-76a9, complete sequence Length = 142579 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 350 attcattcatacccaacattcaaggtattctatgatggcgaagaagttgcaaaatataaa 409 ||||||||||| || || || ||||| ||||||||||| ||||||||||| |||||| || Sbjct: 92339 attcattcatatcctacctttaaggttttctatgatggagaagaagttgccaaatatcaa 92280 Query: 410 gg 411 || Sbjct: 92279 gg 92278
>ref|NM_202058.1| Arabidopsis thaliana ATPDIL5-1; electron transporter/ thiol-disulfide exchange intermediate (ATPDIL5-1) mRNA, complete cds Length = 1241 Score = 54.0 bits (27), Expect = 8e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 161 accttctccgacaagataaaggagaaggacacggtgtggtttgtgcaattctgcgtccct 220 ||||| || |||||||||||||||||||| || | |||||| || | || || || ||| Sbjct: 592 accttttctgacaagataaaggagaaggatactgcgtggttcgtaaagttttgtgttcct 651 Query: 221 tggtgtaagcactgcaaga 239 |||||||| |||||||||| Sbjct: 652 tggtgtaaacactgcaaga 670
>ref|NM_202059.1| Arabidopsis thaliana ATPDIL5-1; electron transporter/ thiol-disulfide exchange intermediate (ATPDIL5-1) mRNA, complete cds Length = 843 Score = 54.0 bits (27), Expect = 8e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 161 accttctccgacaagataaaggagaaggacacggtgtggtttgtgcaattctgcgtccct 220 ||||| || |||||||||||||||||||| || | |||||| || | || || || ||| Sbjct: 179 accttttctgacaagataaaggagaaggatactgcgtggttcgtaaagttttgtgttcct 238 Query: 221 tggtgtaagcactgcaaga 239 |||||||| |||||||||| Sbjct: 239 tggtgtaaacactgcaaga 257
>ref|NM_100670.2| Arabidopsis thaliana ATPDIL5-1; electron transporter/ thiol-disulfide exchange intermediate (ATPDIL5-1) mRNA, complete cds Length = 849 Score = 54.0 bits (27), Expect = 8e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 161 accttctccgacaagataaaggagaaggacacggtgtggtttgtgcaattctgcgtccct 220 ||||| || |||||||||||||||||||| || | |||||| || | || || || ||| Sbjct: 200 accttttctgacaagataaaggagaaggatactgcgtggttcgtaaagttttgtgttcct 259 Query: 221 tggtgtaagcactgcaaga 239 |||||||| |||||||||| Sbjct: 260 tggtgtaaacactgcaaga 278
>gb|BT012051.1| Arabidopsis thaliana At1g07960 mRNA sequence Length = 366 Score = 54.0 bits (27), Expect = 8e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 161 accttctccgacaagataaaggagaaggacacggtgtggtttgtgcaattctgcgtccct 220 ||||| || |||||||||||||||||||| || | |||||| || | || || || ||| Sbjct: 25 accttttctgacaagataaaggagaaggatactgcgtggttcgtaaagttttgtgttcct 84 Query: 221 tggtgtaagcactgcaaga 239 |||||||| |||||||||| Sbjct: 85 tggtgtaaacactgcaaga 103
>gb|BT004994.1| Arabidopsis thaliana clone U50593 unknown protein (At1g07960) mRNA, complete cds Length = 472 Score = 54.0 bits (27), Expect = 8e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 161 accttctccgacaagataaaggagaaggacacggtgtggtttgtgcaattctgcgtccct 220 ||||| || |||||||||||||||||||| || | |||||| || | || || || ||| Sbjct: 100 accttttctgacaagataaaggagaaggatactgcgtggttcgtaaagttttgtgttcct 159 Query: 221 tggtgtaagcactgcaaga 239 |||||||| |||||||||| Sbjct: 160 tggtgtaaacactgcaaga 178
>dbj|AK117714.1| Arabidopsis thaliana At1g07960 mRNA for unknown protein, complete cds, clone: RAFL17-39-G15 Length = 743 Score = 54.0 bits (27), Expect = 8e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 161 accttctccgacaagataaaggagaaggacacggtgtggtttgtgcaattctgcgtccct 220 ||||| || |||||||||||||||||||| || | |||||| || | || || || ||| Sbjct: 201 accttttctgacaagataaaggagaaggatactgcgtggttcgtaaagttttgtgttcct 260 Query: 221 tggtgtaagcactgcaaga 239 |||||||| |||||||||| Sbjct: 261 tggtgtaaacactgcaaga 279
>emb|BX818734.1|CNS0ABB2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL95ZG02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 843 Score = 54.0 bits (27), Expect = 8e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 161 accttctccgacaagataaaggagaaggacacggtgtggtttgtgcaattctgcgtccct 220 ||||| || |||||||||||||||||||| || | |||||| || | || || || ||| Sbjct: 179 accttttctgacaagataaaggagaaggatactgcgtggttcgtaaagttttgtgttcct 238 Query: 221 tggtgtaagcactgcaaga 239 |||||||| |||||||||| Sbjct: 239 tggtgtaaacactgcaaga 257
>emb|BX814232.1|CNS0AC3O Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB62ZD09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1215 Score = 52.0 bits (26), Expect = 0.003 Identities = 59/70 (84%) Strand = Plus / Plus Query: 170 gacaagataaaggagaaggacacggtgtggtttgtgcaattctgcgtcccttggtgtaag 229 |||||||||||||||||||| || | |||||| || | || || || ||||||||||| Sbjct: 601 gacaagataaaggagaaggatactgcgtggttcgtaaagttttgtgttccttggtgtaaa 660 Query: 230 cactgcaaga 239 |||||||||| Sbjct: 661 cactgcaaga 670
>gb|AC037450.6| Homo sapiens chromosome 8, clone RP11-226G12, complete sequence Length = 169876 Score = 48.1 bits (24), Expect = 0.047 Identities = 24/24 (100%) Strand = Plus / Plus Query: 704 caaactattttttaaaagctattt 727 |||||||||||||||||||||||| Sbjct: 41913 caaactattttttaaaagctattt 41936
>dbj|AK171064.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630222A07 product:Ras and Rab interactor 2, full insert sequence Length = 3042 Score = 44.1 bits (22), Expect = 0.73 Identities = 22/22 (100%) Strand = Plus / Plus Query: 658 gaaatatttttgtaacttttaa 679 |||||||||||||||||||||| Sbjct: 1916 gaaatatttttgtaacttttaa 1937
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.73 Identities = 25/26 (96%) Strand = Plus / Plus Query: 150 tcaccgaagagaccttctccgacaag 175 ||||||||||||||||| |||||||| Sbjct: 1287319 tcaccgaagagaccttcaccgacaag 1287344
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 44.1 bits (22), Expect = 0.73 Identities = 22/22 (100%) Strand = Plus / Minus Query: 664 tttttgtaacttttaacctttt 685 |||||||||||||||||||||| Sbjct: 22833613 tttttgtaacttttaacctttt 22833592
>emb|AL163532.8| Human DNA sequence from clone RP11-226D23 on chromosome 13, complete sequence Length = 20988 Score = 44.1 bits (22), Expect = 0.73 Identities = 25/26 (96%) Strand = Plus / Plus Query: 64 ctcccgcctccctatccacctcctgc 89 ||||||||||||| |||||||||||| Sbjct: 3150 ctcccgcctccctttccacctcctgc 3175
>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0104B02 Length = 169588 Score = 44.1 bits (22), Expect = 0.73 Identities = 22/22 (100%) Strand = Plus / Minus Query: 664 tttttgtaacttttaacctttt 685 |||||||||||||||||||||| Sbjct: 7451 tttttgtaacttttaacctttt 7430
>dbj|AP006845.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, fosmid clone:OSJNOa174H12 Length = 33245 Score = 44.1 bits (22), Expect = 0.73 Identities = 22/22 (100%) Strand = Plus / Minus Query: 664 tttttgtaacttttaacctttt 685 |||||||||||||||||||||| Sbjct: 22205 tttttgtaacttttaacctttt 22184
>gb|CP000487.1| Campylobacter fetus subsp. fetus 82-40, complete genome Length = 1773615 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 705 aaactattttttaaaagctat 725 ||||||||||||||||||||| Sbjct: 1386796 aaactattttttaaaagctat 1386816
>ref|XM_001008349.1| Tetrahymena thermophila SB210 hypothetical protein (TTHERM_00013700) mRNA, complete cds Length = 2589 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 783 aaatatttttgtaacttttaa 763
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 658 gaaatatttttgtaactttta 678 ||||||||||||||||||||| Sbjct: 18091448 gaaatatttttgtaactttta 18091428
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 130 cggcgccgaggtcatcaccctcacc 154 ||||| ||||||||||||||||||| Sbjct: 6886895 cggcgacgaggtcatcaccctcacc 6886871
>ref|XM_904046.2| PREDICTED: Mus musculus Ras and Rab interactor 2, transcript variant 4 (Rin2), mRNA Length = 2784 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 1656 aaatatttttgtaacttttaa 1676
>ref|XM_904047.2| PREDICTED: Mus musculus Ras and Rab interactor 2, transcript variant 5 (Rin2), mRNA Length = 2671 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 1543 aaatatttttgtaacttttaa 1563
>ref|XM_623023.3| PREDICTED: Mus musculus Ras and Rab interactor 2, transcript variant 3 (Rin2), mRNA Length = 4247 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 3119 aaatatttttgtaacttttaa 3139
>ref|XM_617624.2| PREDICTED: Bos taurus similar to RAB5 interacting protein 2 (LOC537459), partial mRNA Length = 2950 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 2792 aaatatttttgtaacttttaa 2812
>ref|NM_028724.2| Mus musculus Ras and Rab interactor 2 (Rin2), mRNA gb|BC040390.1| Mus musculus Ras and Rab interactor 2, mRNA (cDNA clone MGC:27785 IMAGE:3156682), complete cds Length = 4664 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 3524 aaatatttttgtaacttttaa 3544
>ref|XM_538804.1| PREDICTED: Canis familiaris similar to B-box and SPRY domain containing (LOC481682), mRNA Length = 1047 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 tccccgtcttcgccgtggccg 25 ||||||||||||||||||||| Sbjct: 1001 tccccgtcttcgccgtggccg 1021
>gb|BC005529.1| Mus musculus Ras and Rab interactor 2, mRNA (cDNA clone MGC:7647 IMAGE:3495681), complete cds Length = 3118 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 1963 aaatatttttgtaacttttaa 1983
>gb|AC159272.2| Mus musculus BAC clone RP23-423J20 from chromosome 13, complete sequence Length = 186588 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 229 gcactgcaagagcctaggaac 249 ||||||||||||||||||||| Sbjct: 66769 gcactgcaagagcctaggaac 66749
>dbj|AK152025.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830045I08 product:Ras and Rab interactor 2, full insert sequence Length = 3090 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 1975 aaatatttttgtaacttttaa 1995
>dbj|AK152893.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830089I21 product:Ras and Rab interactor 2, full insert sequence Length = 4458 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 3338 aaatatttttgtaacttttaa 3358
>dbj|AK150680.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830013K04 product:Ras and Rab interactor 2, full insert sequence Length = 4457 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 3338 aaatatttttgtaacttttaa 3358
>dbj|AK151332.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830028C17 product:Ras and Rab interactor 2, full insert sequence Length = 4414 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 3294 aaatatttttgtaacttttaa 3314
>dbj|AK154421.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630030I04 product:Ras and Rab interactor 2, full insert sequence Length = 3053 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 1949 aaatatttttgtaacttttaa 1969
>dbj|AK163047.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430098L20 product:Ras and Rab interactor 2, full insert sequence Length = 3195 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 2515 aaatatttttgtaacttttaa 2535
>gb|AC010059.6| Drosophila melanogaster 3L BAC RP98-17A14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 171678 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 658 gaaatatttttgtaactttta 678 ||||||||||||||||||||| Sbjct: 2015 gaaatatttttgtaactttta 2035
>gb|AC021749.6| Homo sapiens chromosome 11, clone RP11-810F22, complete sequence Length = 193997 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 709 tattttttaaaagctatttgc 729 ||||||||||||||||||||| Sbjct: 109835 tattttttaaaagctatttgc 109855
>gb|AC104507.5| Drosophila melanogaster 3L BAC RP98-26J11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 183911 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 658 gaaatatttttgtaactttta 678 ||||||||||||||||||||| Sbjct: 104293 gaaatatttttgtaactttta 104273
>gb|AC073437.50| Mus musculus strain 129/Sv chromosome 2 clone ct7-531j6, complete sequence Length = 176056 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 55813 aaatatttttgtaacttttaa 55833
>dbj|AK014548.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4632403N06 product:RAS INHIBITOR (FRAGMENT) homolog [Homo sapiens], full insert sequence Length = 2681 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 2001 aaatatttttgtaacttttaa 2021
>dbj|AK040763.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530023H11 product:Ras inhibitor (clone JC265) (fragment) homolog [Homo sapiens], full insert sequence Length = 2794 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 2002 aaatatttttgtaacttttaa 2022
>gb|AC019188.6| Homo sapiens BAC clone RP11-309H6 from 4, complete sequence Length = 207835 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 114043 aaatatttttgtaacttttaa 114023
>emb|AL391903.15| Human DNA sequence from clone RP1-229K20 on chromosome 6 Contains 4 pseudogenes and the TREM1 gene for triggering receptor expressed on myeloid cells 1, complete sequence Length = 92814 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 661 atatttttgtaacttttaacctttt 685 |||||||| |||||||||||||||| Sbjct: 35203 atatttttctaacttttaacctttt 35179
>emb|AL035422.12|HS164F3 Human DNA sequence from clone RP1-164F3 on chromosome Xq21.33-23 Contains a ribosomal protein L21 (RPL21) pseudogene, the TIMM8A gene for translocase of inner mitochondrial membrane 8 homolog A (yeast), the BTK gene for Bruton agammaglobulinemia tyrosine kinase, the RPL36A gene for ribosomal protein L36a, the GLA gene for alpha galactosidase, the HNRPH2 gene for heterogeneous nuclear ribonucleoprotein H2 (H'), the gene for a novel protein, a peptidylprolyl isomerase A (cyclophilin A) (PPIA) pseudogene and two CpG islands, complete sequence Length = 136693 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 91903 aaatatttttgtaacttttaa 91923
>gb|AC097717.3| Homo sapiens BAC clone RP11-650N19 from 2, complete sequence Length = 142978 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 69450 aaatatttttgtaacttttaa 69470
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 atgaaattgaaatcggaaaag 308 ||||||||||||||||||||| Sbjct: 2962679 atgaaattgaaatcggaaaag 2962659
>gb|AC005245.1|AC005245 Homo sapiens chromosome 17, clone hRPK.642_C_21, complete sequence Length = 172084 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 452 gaagctgagaaagcaggagag 472 ||||||||||||||||||||| Sbjct: 3051 gaagctgagaaagcaggagag 3071
>gb|U78027.1|HSU78027 Homo sapiens Bruton's tyrosine kinase (BTK), alpha-D-galactosidase A (GLA), L44-like ribosomal protein (L44L) and FTP3 (FTP3) genes, complete cds Length = 99014 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 13271 aaatatttttgtaacttttaa 13251
>emb|AL672100.7| Mouse DNA sequence from clone RP23-125A1 on chromosome 2, complete sequence Length = 196421 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 659 aaatatttttgtaacttttaa 679 ||||||||||||||||||||| Sbjct: 128481 aaatatttttgtaacttttaa 128501 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 142,156,460 Number of extensions: 8441836 Number of successful extensions: 166774 Number of sequences better than 10.0: 56 Number of HSP's gapped: 166762 Number of HSP's successfully gapped: 60 Length of query: 770 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 748 Effective length of database: 18,508,616,841 Effective search space: 13844445397068 Effective search space used: 13844445397068 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)