| Clone Name | FLbaf79k02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001061042.1| Oryza sativa (japonica cultivar-group) Os05g0122800 (Os05g0122800) mRNA, complete cds Length = 1455 Score = 428 bits (216), Expect = e-116 Identities = 463/544 (85%), Gaps = 1/544 (0%) Strand = Plus / Plus Query: 1 taccagctctccgactacaacggctggctccgcggccgcgtcgccgaccccgactactgg 60 ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| Sbjct: 538 taccagctctccgactacaacggatggctccgcgaccgcgtcgccgaccccgcctactgg 597 Query: 61 gccaccatcagcgcatgcctccgcgacgg-cacgcctgccgctccatgcgccgccccgtc 119 |||||||||||||| |||||||||||||| | ||||||| | ||||||||||| || | Sbjct: 598 gccaccatcagcgcctgcctccgcgacggccgcgcctgcgccgccatgcgccgcttcgcc 657 Query: 120 cgcgaccccaacaccggcatgctcgtcctcgagcccgccgtcgtcttctacggccgcgac 179 |||||||||||||||||||||||||||| |||| || || | | ||||||| ||||||| Sbjct: 658 cgcgaccccaacaccggcatgctcgtccccgagaccccctccatgttctacgcccgcgac 717 Query: 180 ctctccccgattcagtctggatgctgcaagccaccgacgtcatgtgcgttcacctacaac 239 |||||||| || ||||||||||||||||||||||| || || ||||| | || ||| Sbjct: 718 ctctcccccatccagtctggatgctgcaagccaccaacatcgtgtgcatacaactatgtt 777 Query: 240 aacgagacgtactggagcgcgaaccccggcgttcccaccgtggtgaccgaccccgactgc 299 ||||| |||| ||||| ||| ||||| |||||||| ||||| |||| || |||||| Sbjct: 778 aacgaaacgttctggaccgcaaaccctggcgttccgaccgtcgtgaatgatgtggactgc 837 Query: 300 ctcaaatggagcaacgaccagcagacgttgtgcttccagtgcgactcgtgcaaggctggc 359 ||| |||||||| |||||||||||| | ||||||||||| ||||| |||||||| ||| Sbjct: 838 agcaagtggagcaatgaccagcagacgctttgcttccagtgtgactcctgcaaggcaggc 897 Query: 360 gtcctggccggcatcaagaagagctggcgcaaggtggccatcatcaacatcgtcgtgctc 419 ||||| || |||||||||||||||||||| ||||| |||||| |||||||||||||||| Sbjct: 898 gtcctcgctggcatcaagaagagctggcgtaaggttgccatcctcaacatcgtcgtgctg 957 Query: 420 atcatcctcgtcatcgtctacgtcgccggctgcgccgcgttccgcaacgccaagagggac 479 ||||||||||||||||| || || || ||||| ||||| ||||||||||||| |||| | Sbjct: 958 atcatcctcgtcatcgtgtatgttgctggctgtgccgctttccgcaacgccaggaggatc 1017 Query: 480 gacaacgatgagtcgtacggcatggccaggatgaccaagtcccggccgagcaggttccag 539 || ||||| ||| ||| || ||||| |||||||||||| | | || |||||||||||| Sbjct: 1018 gaaaacgacgagccgtttggtatggcaaggatgaccaagactcaacctagcaggttccag 1077 Query: 540 ttct 543 |||| Sbjct: 1078 ttct 1081
>dbj|AK068516.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151M14, full insert sequence Length = 1458 Score = 420 bits (212), Expect = e-114 Identities = 462/544 (84%), Gaps = 1/544 (0%) Strand = Plus / Plus Query: 1 taccagctctccgactacaacggctggctccgcggccgcgtcgccgaccccgactactgg 60 ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| Sbjct: 539 taccagctctccgactacaacggatggctccgcgaccgcgtcgccgaccccgcctactgg 598 Query: 61 gccaccatcagcgcatgcctccgcgacgg-cacgcctgccgctccatgcgccgccccgtc 119 |||||||||||||| |||||||||||||| | ||||||| | ||||||||||| || | Sbjct: 599 gccaccatcagcgcctgcctccgcgacggccgcgcctgcgccgccatgcgccgcttcgcc 658 Query: 120 cgcgaccccaacaccggcatgctcgtcctcgagcccgccgtcgtcttctacggccgcgac 179 |||||||||||||||||||||||||||| |||| || || | | ||||||| ||||||| Sbjct: 659 cgcgaccccaacaccggcatgctcgtccccgagaccccctccatgttctacgcccgcgac 718 Query: 180 ctctccccgattcagtctggatgctgcaagccaccgacgtcatgtgcgttcacctacaac 239 |||||||| || ||||||||||||||||||||||| || || ||||| | || ||| Sbjct: 719 ctctcccccatccagtctggatgctgcaagccaccaacatcgtgtgcatacaactatgtt 778 Query: 240 aacgagacgtactggagcgcgaaccccggcgttcccaccgtggtgaccgaccccgactgc 299 ||||| |||| ||||| ||| |||| |||||||| ||||| |||| || |||||| Sbjct: 779 aacgaaacgttctggaccgcataccctggcgttccgaccgtcgtgaatgatgtggactgc 838 Query: 300 ctcaaatggagcaacgaccagcagacgttgtgcttccagtgcgactcgtgcaaggctggc 359 ||| |||||||| |||||||||||| | ||||||||||| ||||| |||||||| ||| Sbjct: 839 agcaagtggagcaatgaccagcagacgctttgcttccagtgtgactcctgcaaggcaggc 898 Query: 360 gtcctggccggcatcaagaagagctggcgcaaggtggccatcatcaacatcgtcgtgctc 419 ||||| || |||||||||||||||||||| ||||| |||||| |||||||||||||||| Sbjct: 899 gtcctcgctggcatcaagaagagctggcgtaaggttgccatcctcaacatcgtcgtgctg 958 Query: 420 atcatcctcgtcatcgtctacgtcgccggctgcgccgcgttccgcaacgccaagagggac 479 ||||||||||||||||| || || || ||||| ||||| ||||||||||||| |||| | Sbjct: 959 atcatcctcgtcatcgtgtatgttgctggctgtgccgctttccgcaacgccaggaggatc 1018 Query: 480 gacaacgatgagtcgtacggcatggccaggatgaccaagtcccggccgagcaggttccag 539 || ||||| ||| ||| || ||||| |||||||||||| | | || |||||||||||| Sbjct: 1019 gaaaacgacgagccgtttggtatggcaaggatgaccaagactcaacctagcaggttccag 1078 Query: 540 ttct 543 |||| Sbjct: 1079 ttct 1082
>emb|CT828069.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117H19, full insert sequence Length = 1274 Score = 295 bits (149), Expect = 1e-76 Identities = 366/437 (83%), Gaps = 1/437 (0%) Strand = Plus / Plus Query: 1 taccagctctccgactacaacggctggctccgcggccgcgtcgccgaccccgactactgg 60 ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| Sbjct: 573 taccagctctccgactacaacggatggctccgcgaccgcgtcgccgaccccgcctactgg 632 Query: 61 gccaccatcagcgcatgcctccgcgacgg-cacgcctgccgctccatgcgccgccccgtc 119 |||||||||||||| |||||||||||||| | ||||||| | ||||||||||| || | Sbjct: 633 gccaccatcagcgcctgcctccgcgacggccgcgcctgcgccgccatgcgccgcttcgcc 692 Query: 120 cgcgaccccaacaccggcatgctcgtcctcgagcccgccgtcgtcttctacggccgcgac 179 |||||||||||||||||||||||||||| |||| || || | | ||||||| ||||||| Sbjct: 693 cgcgaccccaacaccggcatgctcgtccccgagaccccctccatgttctacgcccgcgac 752 Query: 180 ctctccccgattcagtctggatgctgcaagccaccgacgtcatgtgcgttcacctacaac 239 |||||||| || ||||||||||||||||||||||| || || ||||| | || ||| Sbjct: 753 ctctcccccatccagtctggatgctgcaagccaccaacatcgtgtgcatacaactatgtg 812 Query: 240 aacgagacgtactggagcgcgaaccccggcgttcccaccgtggtgaccgaccccgactgc 299 ||||| |||| ||| ||| ||||| |||||||| |||| |||| ||| |||| | Sbjct: 813 aacgaaacgttttggcccgcaaaccctggcgttccgcccgtcgtgaacgatgtggactcc 872 Query: 300 ctcaaatggagcaacgaccagcagacgttgtgcttccagtgcgactcgtgcaaggctggc 359 ||| |||| ||| ||||| ||||| | ||||||||||| ||||| |||||||| || Sbjct: 873 accaagtggaccaatgaccaccagaccctttgcttccagtgtgactcctgcaaggcaggg 932 Query: 360 gtcctggccggcatcaagaagagctggcgcaaggtggccatcatcaacatcgtcgtgctc 419 ||||| || |||||||| || |||||| | ||||| ||| || |||||||||||||||| Sbjct: 933 gtcctcgctggcatcaaaaaaagctggggtaaggttgccctcctcaacatcgtcgtgctg 992 Query: 420 atcatcctcgtcatcgt 436 ||||||||||||||||| Sbjct: 993 atcatcctcgtcatcgt 1009
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 230 bits (116), Expect = 6e-57 Identities = 293/352 (83%) Strand = Plus / Plus Query: 192 cagtctggatgctgcaagccaccgacgtcatgtgcgttcacctacaacaacgagacgtac 251 ||||||||||||||||||||||| || || ||||| | || ||| ||||| |||| | Sbjct: 1197605 cagtctggatgctgcaagccaccaacatcgtgtgcatacaactatgttaacgaaacgttc 1197664 Query: 252 tggagcgcgaaccccggcgttcccaccgtggtgaccgaccccgactgcctcaaatggagc 311 |||| ||| ||||| |||||||| ||||| |||| || |||||| ||| |||||| Sbjct: 1197665 tggaccgcaaaccctggcgttccgaccgtcgtgaatgatgtggactgcagcaagtggagc 1197724 Query: 312 aacgaccagcagacgttgtgcttccagtgcgactcgtgcaaggctggcgtcctggccggc 371 || |||||||||||| | ||||||||||| ||||| |||||||| |||||||| || ||| Sbjct: 1197725 aatgaccagcagacgctttgcttccagtgtgactcctgcaaggcaggcgtcctcgctggc 1197784 Query: 372 atcaagaagagctggcgcaaggtggccatcatcaacatcgtcgtgctcatcatcctcgtc 431 ||||||||||||||||| ||||| |||||| |||||||||||||||| |||||||||||| Sbjct: 1197785 atcaagaagagctggcgtaaggttgccatcctcaacatcgtcgtgctgatcatcctcgtc 1197844 Query: 432 atcgtctacgtcgccggctgcgccgcgttccgcaacgccaagagggacgacaacgatgag 491 ||||| || || || ||||| ||||| ||||||||||||| |||| ||| ||||| ||| Sbjct: 1197845 atcgtgtatgttgctggctgtgccgctttccgcaacgccaggaggatcgaaaacgacgag 1197904 Query: 492 tcgtacggcatggccaggatgaccaagtcccggccgagcaggttccagttct 543 ||| || ||||| |||||||||||| | | || |||||||||||||||| Sbjct: 1197905 ccgtttggtatggcaaggatgaccaagactcaacctagcaggttccagttct 1197956 Score = 206 bits (104), Expect = 8e-50 Identities = 168/188 (89%), Gaps = 1/188 (0%) Strand = Plus / Plus Query: 1 taccagctctccgactacaacggctggctccgcggccgcgtcgccgaccccgactactgg 60 ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| Sbjct: 1194740 taccagctctccgactacaacggatggctccgcgaccgcgtcgccgaccccgcctactgg 1194799 Query: 61 gccaccatcagcgcatgcctccgcgacgg-cacgcctgccgctccatgcgccgccccgtc 119 |||||||||||||| |||||||||||||| | ||||||| | ||||||||||| || | Sbjct: 1194800 gccaccatcagcgcctgcctccgcgacggccgcgcctgcgccgccatgcgccgcttcgcc 1194859 Query: 120 cgcgaccccaacaccggcatgctcgtcctcgagcccgccgtcgtcttctacggccgcgac 179 |||||||||||||||||||||||||||| |||| || || | | ||||||| ||||||| Sbjct: 1194860 cgcgaccccaacaccggcatgctcgtccccgagaccccctccatgttctacgcccgcgac 1194919 Query: 180 ctctcccc 187 |||||||| Sbjct: 1194920 ctctcccc 1194927
>dbj|AK065567.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033D20, full insert sequence Length = 2066 Score = 230 bits (116), Expect = 6e-57 Identities = 293/352 (83%) Strand = Plus / Plus Query: 192 cagtctggatgctgcaagccaccgacgtcatgtgcgttcacctacaacaacgagacgtac 251 ||||||||||||||||||||||| || || ||||| | || ||| ||||| |||| | Sbjct: 1375 cagtctggatgctgcaagccaccaacatcgtgtgcatacaactatgttaacgaaacgttc 1434 Query: 252 tggagcgcgaaccccggcgttcccaccgtggtgaccgaccccgactgcctcaaatggagc 311 |||| ||| ||||| |||||||| ||||| |||| || |||||| ||| |||||| Sbjct: 1435 tggaccgcaaaccctggcgttccgaccgtcgtgaatgatgtggactgcagcaagtggagc 1494 Query: 312 aacgaccagcagacgttgtgcttccagtgcgactcgtgcaaggctggcgtcctggccggc 371 || |||||||||||| | ||||||||||| ||||| |||||||| |||||||| || ||| Sbjct: 1495 aatgaccagcagacgctttgcttccagtgtgactcctgcaaggcaggcgtcctcgctggc 1554 Query: 372 atcaagaagagctggcgcaaggtggccatcatcaacatcgtcgtgctcatcatcctcgtc 431 ||||||||||||||||| ||||| |||||| |||||||||||||||| |||||||||||| Sbjct: 1555 atcaagaagagctggcgtaaggttgccatcctcaacatcgtcgtgctgatcatcctcgtc 1614 Query: 432 atcgtctacgtcgccggctgcgccgcgttccgcaacgccaagagggacgacaacgatgag 491 ||||| || || || ||||| ||||| ||||||||||||| |||| ||| ||||| ||| Sbjct: 1615 atcgtgtatgttgctggctgtgccgctttccgcaacgccaggaggatcgaaaacgacgag 1674 Query: 492 tcgtacggcatggccaggatgaccaagtcccggccgagcaggttccagttct 543 ||| || ||||| |||||||||||| | | || |||||||||||||||| Sbjct: 1675 ccgtttggtatggcaaggatgaccaagactcaacctagcaggttccagttct 1726
>gb|AC093089.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1729_E02, complete sequence Length = 90509 Score = 230 bits (116), Expect = 6e-57 Identities = 293/352 (83%) Strand = Plus / Plus Query: 192 cagtctggatgctgcaagccaccgacgtcatgtgcgttcacctacaacaacgagacgtac 251 ||||||||||||||||||||||| || || ||||| | || ||| ||||| |||| | Sbjct: 47891 cagtctggatgctgcaagccaccaacatcgtgtgcatacaactatgttaacgaaacgttc 47950 Query: 252 tggagcgcgaaccccggcgttcccaccgtggtgaccgaccccgactgcctcaaatggagc 311 |||| ||| ||||| |||||||| ||||| |||| || |||||| ||| |||||| Sbjct: 47951 tggaccgcaaaccctggcgttccgaccgtcgtgaatgatgtggactgcagcaagtggagc 48010 Query: 312 aacgaccagcagacgttgtgcttccagtgcgactcgtgcaaggctggcgtcctggccggc 371 || |||||||||||| | ||||||||||| ||||| |||||||| |||||||| || ||| Sbjct: 48011 aatgaccagcagacgctttgcttccagtgtgactcctgcaaggcaggcgtcctcgctggc 48070 Query: 372 atcaagaagagctggcgcaaggtggccatcatcaacatcgtcgtgctcatcatcctcgtc 431 ||||||||||||||||| ||||| |||||| |||||||||||||||| |||||||||||| Sbjct: 48071 atcaagaagagctggcgtaaggttgccatcctcaacatcgtcgtgctgatcatcctcgtc 48130 Query: 432 atcgtctacgtcgccggctgcgccgcgttccgcaacgccaagagggacgacaacgatgag 491 ||||| || || || ||||| ||||| ||||||||||||| |||| ||| ||||| ||| Sbjct: 48131 atcgtgtatgttgctggctgtgccgctttccgcaacgccaggaggatcgaaaacgacgag 48190 Query: 492 tcgtacggcatggccaggatgaccaagtcccggccgagcaggttccagttct 543 ||| || ||||| |||||||||||| | | || |||||||||||||||| Sbjct: 48191 ccgtttggtatggcaaggatgaccaagactcaacctagcaggttccagttct 48242 Score = 206 bits (104), Expect = 8e-50 Identities = 168/188 (89%), Gaps = 1/188 (0%) Strand = Plus / Plus Query: 1 taccagctctccgactacaacggctggctccgcggccgcgtcgccgaccccgactactgg 60 ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| Sbjct: 45026 taccagctctccgactacaacggatggctccgcgaccgcgtcgccgaccccgcctactgg 45085 Query: 61 gccaccatcagcgcatgcctccgcgacgg-cacgcctgccgctccatgcgccgccccgtc 119 |||||||||||||| |||||||||||||| | ||||||| | ||||||||||| || | Sbjct: 45086 gccaccatcagcgcctgcctccgcgacggccgcgcctgcgccgccatgcgccgcttcgcc 45145 Query: 120 cgcgaccccaacaccggcatgctcgtcctcgagcccgccgtcgtcttctacggccgcgac 179 |||||||||||||||||||||||||||| |||| || || | | ||||||| ||||||| Sbjct: 45146 cgcgaccccaacaccggcatgctcgtccccgagaccccctccatgttctacgcccgcgac 45205 Query: 180 ctctcccc 187 |||||||| Sbjct: 45206 ctctcccc 45213
>dbj|AK101005.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147M12, full insert sequence Length = 2183 Score = 206 bits (104), Expect = 8e-50 Identities = 168/188 (89%), Gaps = 1/188 (0%) Strand = Plus / Plus Query: 1 taccagctctccgactacaacggctggctccgcggccgcgtcgccgaccccgactactgg 60 ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| Sbjct: 489 taccagctctccgactacaacggatggctccgcgaccgcgtcgccgaccccgcctactgg 548 Query: 61 gccaccatcagcgcatgcctccgcgacgg-cacgcctgccgctccatgcgccgccccgtc 119 |||||||||||||| |||||||||||||| | ||||||| | ||||||||||| || | Sbjct: 549 gccaccatcagcgcctgcctccgcgacggccgcgcctgcgccgccatgcgccgcttcgcc 608 Query: 120 cgcgaccccaacaccggcatgctcgtcctcgagcccgccgtcgtcttctacggccgcgac 179 |||||||||||||||||||||||||||| |||| || || | | ||||||| ||||||| Sbjct: 609 cgcgaccccaacaccggcatgctcgtccccgagaccccctccatgttctacgcccgcgac 668 Query: 180 ctctcccc 187 |||||||| Sbjct: 669 ctctcccc 676
>gb|AY107497.1| Zea mays PCO100488 mRNA sequence Length = 836 Score = 95.6 bits (48), Expect = 2e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 452 cgccgcgttccgcaacgccaagagggacgacaacgatgagtcgtacggcatggccaggat 511 ||||||||||||||||||||||||| ||||||||| ||| || |||||||| |||| Sbjct: 446 cgccgcgttccgcaacgccaagaggatcgacaacgacgagccggtgggcatggcgcggat 505 Query: 512 gaccaagtcccggccgagcaggttccagttctaggc 547 ||||||||||| || |||||||||||||||||||| Sbjct: 506 gaccaagtcccatccaagcaggttccagttctaggc 541
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 83.8 bits (42), Expect = 8e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 306 tggagcaacgaccagcagacgttgtgcttccagtgcgactcgtgcaaggctggcgtcctg 365 ||||||||| |||| |||||| | ||||||||||||||||| |||||||||||| ||||| Sbjct: 8328366 tggagcaacaaccaacagacgctctgcttccagtgcgactcatgcaaggctggcttcctg 8328425 Query: 366 gccggcatcaagaa 379 | || ||||||||| Sbjct: 8328426 gacgacatcaagaa 8328439 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 192 cagtctggatgctgcaagccaccgacgtcatgtg 225 |||||||||||||||||||||||||| ||||||| Sbjct: 8328243 cagtctggatgctgcaagccaccgacatcatgtg 8328276 Score = 44.1 bits (22), Expect = 0.71 Identities = 61/74 (82%) Strand = Plus / Plus Query: 16 tacaacggctggctccgcggccgcgtcgccgaccccgactactgggccaccatcagcgca 75 |||| ||| |||||| | ||||| || |||||||| ||||||||| || | ||||||| Sbjct: 8327266 tacagcgggtggctcaggggccgtgtggccgacccgcactactgggaaacaaccagcgca 8327325 Query: 76 tgcctccgcgacgg 89 ||||| |||||||| Sbjct: 8327326 tgcctacgcgacgg 8327339
>emb|AL772416.6|CNS08C9U Oryza sativa chromosome 12, . BAC OSJNBa0095H15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 142670 Score = 83.8 bits (42), Expect = 8e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 306 tggagcaacgaccagcagacgttgtgcttccagtgcgactcgtgcaaggctggcgtcctg 365 ||||||||| |||| |||||| | ||||||||||||||||| |||||||||||| ||||| Sbjct: 14527 tggagcaacaaccaacagacgctctgcttccagtgcgactcatgcaaggctggcttcctg 14468 Query: 366 gccggcatcaagaa 379 | || ||||||||| Sbjct: 14467 gacgacatcaagaa 14454 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Minus Query: 192 cagtctggatgctgcaagccaccgacgtcatgtg 225 |||||||||||||||||||||||||| ||||||| Sbjct: 14650 cagtctggatgctgcaagccaccgacatcatgtg 14617 Score = 44.1 bits (22), Expect = 0.71 Identities = 61/74 (82%) Strand = Plus / Minus Query: 16 tacaacggctggctccgcggccgcgtcgccgaccccgactactgggccaccatcagcgca 75 |||| ||| |||||| | ||||| || |||||||| ||||||||| || | ||||||| Sbjct: 15627 tacagcgggtggctcaggggccgtgtggccgacccgcactactgggaaacaaccagcgca 15568 Query: 76 tgcctccgcgacgg 89 ||||| |||||||| Sbjct: 15567 tgcctacgcgacgg 15554
>emb|AL731877.4|CNS08C8H Oryza sativa chromosome 12, . BAC OJ1368_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104296 Score = 83.8 bits (42), Expect = 8e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 306 tggagcaacgaccagcagacgttgtgcttccagtgcgactcgtgcaaggctggcgtcctg 365 ||||||||| |||| |||||| | ||||||||||||||||| |||||||||||| ||||| Sbjct: 72131 tggagcaacaaccaacagacgctctgcttccagtgcgactcatgcaaggctggcttcctg 72072 Query: 366 gccggcatcaagaa 379 | || ||||||||| Sbjct: 72071 gacgacatcaagaa 72058 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Minus Query: 192 cagtctggatgctgcaagccaccgacgtcatgtg 225 |||||||||||||||||||||||||| ||||||| Sbjct: 72254 cagtctggatgctgcaagccaccgacatcatgtg 72221 Score = 44.1 bits (22), Expect = 0.71 Identities = 61/74 (82%) Strand = Plus / Minus Query: 16 tacaacggctggctccgcggccgcgtcgccgaccccgactactgggccaccatcagcgca 75 |||| ||| |||||| | ||||| || |||||||| ||||||||| || | ||||||| Sbjct: 73231 tacagcgggtggctcaggggccgtgtggccgacccgcactactgggaaacaaccagcgca 73172 Query: 76 tgcctccgcgacgg 89 ||||| |||||||| Sbjct: 73171 tgcctacgcgacgg 73158
>gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006O08 map S15179S, complete sequence Length = 166005 Score = 77.8 bits (39), Expect = 5e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 306 tggagcaacgaccagcagacgttgtgcttccagtgcgactcgtgcaaggctggcgtcct 364 |||||||||||||| || ||| | |||||||||||||||||||||||||||||| |||| Sbjct: 11635 tggagcaacgaccatcaaacgctttgcttccagtgcgactcgtgcaaggctggcttcct 11693 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 192 cagtctggatgctgcaagccacc 214 ||||||||||||||||||||||| Sbjct: 11491 cagtctggatgctgcaagccacc 11513 Score = 46.1 bits (23), Expect = 0.18 Identities = 50/59 (84%) Strand = Plus / Plus Query: 306 tggagcaacgaccagcagacgttgtgcttccagtgcgactcgtgcaaggctggcgtcct 364 |||||||||||||| || | | | |||||||||||||| || |||||||| ||| |||| Sbjct: 17509 tggagcaacgaccaacaaaagctctgcttccagtgcgattcatgcaaggcaggcttcct 17567 Score = 44.1 bits (22), Expect = 0.71 Identities = 22/22 (100%) Strand = Plus / Plus Query: 193 agtctggatgctgcaagccacc 214 |||||||||||||||||||||| Sbjct: 17402 agtctggatgctgcaagccacc 17423
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 77.8 bits (39), Expect = 5e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 306 tggagcaacgaccagcagacgttgtgcttccagtgcgactcgtgcaaggctggcgtcct 364 |||||||||||||| || ||| | |||||||||||||||||||||||||||||| |||| Sbjct: 35703930 tggagcaacgaccatcaaacgctttgcttccagtgcgactcgtgcaaggctggcttcct 35703988 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 192 cagtctggatgctgcaagccacc 214 ||||||||||||||||||||||| Sbjct: 35703786 cagtctggatgctgcaagccacc 35703808 Score = 46.1 bits (23), Expect = 0.18 Identities = 50/59 (84%) Strand = Plus / Plus Query: 306 tggagcaacgaccagcagacgttgtgcttccagtgcgactcgtgcaaggctggcgtcct 364 |||||||||||||| || | | | |||||||||||||| || |||||||| ||| |||| Sbjct: 35709804 tggagcaacgaccaacaaaagctctgcttccagtgcgattcatgcaaggcaggcttcct 35709862 Score = 44.1 bits (22), Expect = 0.71 Identities = 22/22 (100%) Strand = Plus / Plus Query: 193 agtctggatgctgcaagccacc 214 |||||||||||||||||||||| Sbjct: 35709697 agtctggatgctgcaagccacc 35709718
>gb|AY019903.1| Oryza sativa microsatellite MRG2228 containing (CT)X12, closest to marker S2136, genomic sequence Length = 224 Score = 73.8 bits (37), Expect = 8e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 119 ccgcgaccccaacaccggcatgctcgtcctcgagcccgccgtcgtcttctacggccgcga 178 ||||||||||||||||||||||||||||| |||| || || | | ||||||| |||||| Sbjct: 3 ccgcgaccccaacaccggcatgctcgtccccgagaccccctccatgttctacgcccgcga 62 Query: 179 cctctcccc 187 ||||||||| Sbjct: 63 cctctcccc 71
>dbj|AK242956.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J090089G04, full insert sequence Length = 1243 Score = 63.9 bits (32), Expect = 8e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 180 ctctccccgattcagtctggatgctgcaagcc 211 |||||||||||||||||||||||||||||||| Sbjct: 557 ctctccccgattcagtctggatgctgcaagcc 588
>ref|NM_001064773.1| Oryza sativa (japonica cultivar-group) Os06g0653100 (Os06g0653100) mRNA, complete cds Length = 810 Score = 63.9 bits (32), Expect = 8e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 180 ctctccccgattcagtctggatgctgcaagcc 211 |||||||||||||||||||||||||||||||| Sbjct: 490 ctctccccgattcagtctggatgctgcaagcc 521
>gb|DQ246150.1| Zea mays clone 5316 mRNA sequence Length = 728 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 186 ccgattcagtctggatgctgcaagccaccgacgtcatg 223 ||||| |||||||||||||||||||||||||| ||||| Sbjct: 203 ccgatacagtctggatgctgcaagccaccgacatcatg 240 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 tgtgcttccagtgcgactcgtgcaa 352 |||||| |||||||||||||||||| Sbjct: 327 tgtgctaccagtgcgactcgtgcaa 351
>gb|BT008602.1| Arabidopsis thaliana clone U20589 unknown protein (At4g23410) mRNA, complete cds Length = 877 Score = 54.0 bits (27), Expect = 7e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 190 ttcagtctggatgctgcaagccaccgacgtc 220 ||||||||||||||||||| ||||||||||| Sbjct: 488 ttcagtctggatgctgcaaaccaccgacgtc 518
>gb|BT003875.1| Arabidopsis thaliana clone RAFL15-12-J09 (R20589) unknown protein (At4g23410) mRNA, complete cds Length = 1118 Score = 54.0 bits (27), Expect = 7e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 190 ttcagtctggatgctgcaagccaccgacgtc 220 ||||||||||||||||||| ||||||||||| Sbjct: 629 ttcagtctggatgctgcaaaccaccgacgtc 659
>ref|NM_001067925.1| Oryza sativa (japonica cultivar-group) Os08g0260600 (Os08g0260600) mRNA, complete cds Length = 1090 Score = 50.1 bits (25), Expect = 0.011 Identities = 34/37 (91%) Strand = Plus / Plus Query: 178 acctctccccgattcagtctggatgctgcaagccacc 214 ||||||| ||| | ||||||||||||||||||||||| Sbjct: 512 acctctcgccgctgcagtctggatgctgcaagccacc 548
>gb|AC145812.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0096A19 map near 50283S, complete sequence Length = 139969 Score = 50.1 bits (25), Expect = 0.011 Identities = 34/37 (91%) Strand = Plus / Plus Query: 398 catcatcaacatcgtcgtgctcatcatcctcgtcatc 434 |||||||| ||||||| | |||||||||||||||||| Sbjct: 61863 catcatcatcatcgtcatcctcatcatcctcgtcatc 61899
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 50.1 bits (25), Expect = 0.011 Identities = 34/37 (91%) Strand = Plus / Plus Query: 398 catcatcaacatcgtcgtgctcatcatcctcgtcatc 434 |||||||| ||||||| | |||||||||||||||||| Sbjct: 13824304 catcatcatcatcgtcatcctcatcatcctcgtcatc 13824340
>emb|AL161559.2|ATCHRIV59 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 59 Length = 199199 Score = 50.1 bits (25), Expect = 0.011 Identities = 28/29 (96%) Strand = Plus / Plus Query: 192 cagtctggatgctgcaagccaccgacgtc 220 ||||||||||||||||| ||||||||||| Sbjct: 78320 cagtctggatgctgcaaaccaccgacgtc 78348
>emb|AL031326.1|ATF16G20 Arabidopsis thaliana DNA chromosome 4, BAC clone F16G20 (ESSAII project) Length = 97006 Score = 50.1 bits (25), Expect = 0.011 Identities = 28/29 (96%) Strand = Plus / Plus Query: 192 cagtctggatgctgcaagccaccgacgtc 220 ||||||||||||||||| ||||||||||| Sbjct: 36788 cagtctggatgctgcaaaccaccgacgtc 36816
>dbj|AK108529.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-B12, full insert sequence Length = 1090 Score = 50.1 bits (25), Expect = 0.011 Identities = 34/37 (91%) Strand = Plus / Plus Query: 178 acctctccccgattcagtctggatgctgcaagccacc 214 ||||||| ||| | ||||||||||||||||||||||| Sbjct: 512 acctctcgccgctgcagtctggatgctgcaagccacc 548
>gb|BC034181.1| Mus musculus cation channel, sperm associated 2, mRNA (cDNA clone IMAGE:4973163), with apparent retained intron Length = 2283 Score = 48.1 bits (24), Expect = 0.045 Identities = 36/40 (90%) Strand = Plus / Minus Query: 398 catcatcaacatcgtcgtgctcatcatcctcgtcatcgtc 437 |||||||| ||||||||| |||||||| ||||||||||| Sbjct: 682 catcatcatcatcgtcgtcgtcatcatcgtcgtcatcgtc 643
>gb|AC110820.4| Mus musculus BAC clone RP23-273L3 from 15, complete sequence Length = 168415 Score = 48.1 bits (24), Expect = 0.045 Identities = 36/40 (90%) Strand = Plus / Minus Query: 398 catcatcaacatcgtcgtgctcatcatcctcgtcatcgtc 437 |||||||| ||||||||| |||||||| ||||||||||| Sbjct: 25439 catcatcatcatcgtcgtcgtcatcatcatcgtcatcgtc 25400
>dbj|AK142380.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430028F24 product:cation channel, sperm associated 2, full insert sequence Length = 2130 Score = 48.1 bits (24), Expect = 0.045 Identities = 36/40 (90%) Strand = Plus / Minus Query: 398 catcatcaacatcgtcgtgctcatcatcctcgtcatcgtc 437 |||||||| ||||||||| |||||||| ||||||||||| Sbjct: 550 catcatcatcatcgtcgtcgtcatcatcgtcgtcatcgtc 511
>emb|AL591786.1|SME591786 Sinorhizobium meliloti 1021 complete chromosome; segment 5/12 Length = 299350 Score = 48.1 bits (24), Expect = 0.045 Identities = 30/32 (93%) Strand = Plus / Minus Query: 410 cgtcgtgctcatcatcctcgtcatcgtctacg 441 |||| ||||||||||||||||| ||||||||| Sbjct: 193710 cgtcctgctcatcatcctcgtcgtcgtctacg 193679
>ref|NM_153075.1| Mus musculus cation channel, sperm associated 2 (Catsper2), mRNA gb|AF411816.1|AF411816 Mus musculus putative ion channel protein CATSPER2 mRNA, complete cds Length = 1986 Score = 48.1 bits (24), Expect = 0.045 Identities = 36/40 (90%) Strand = Plus / Minus Query: 398 catcatcaacatcgtcgtgctcatcatcctcgtcatcgtc 437 |||||||| ||||||||| |||||||| ||||||||||| Sbjct: 1365 catcatcatcatcgtcgtcgtcatcatcgtcgtcatcgtc 1326
>gb|AC154614.3| Mus musculus BAC clone RP23-255I2 from chromosome 14, complete sequence Length = 186187 Score = 48.1 bits (24), Expect = 0.045 Identities = 36/40 (90%) Strand = Plus / Plus Query: 398 catcatcaacatcgtcgtgctcatcatcctcgtcatcgtc 437 |||||||| ||||||||| |||||||| ||||||||||| Sbjct: 67886 catcatcatcatcgtcgtcatcatcatcatcgtcatcgtc 67925
>emb|AL845466.4| Mouse DNA sequence from clone RP23-433P19 on chromosome 2, complete sequence Length = 197839 Score = 48.1 bits (24), Expect = 0.045 Identities = 36/40 (90%) Strand = Plus / Plus Query: 398 catcatcaacatcgtcgtgctcatcatcctcgtcatcgtc 437 |||||||| ||||||||| |||||||| ||||||||||| Sbjct: 104436 catcatcatcatcgtcgtcgtcatcatcgtcgtcatcgtc 104475
>ref|XM_762139.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_113_10176_13586) partial mRNA Length = 3411 Score = 48.1 bits (24), Expect = 0.045 Identities = 36/40 (90%) Strand = Plus / Minus Query: 398 catcatcaacatcgtcgtgctcatcatcctcgtcatcgtc 437 |||||||| ||||||||| |||||||| ||||||||||| Sbjct: 2176 catcatcatcatcgtcgtcgtcatcatcatcgtcatcgtc 2137
>ref|NM_135399.2| Drosophila melanogaster Sema-1a CG18405-RB, transcript variant B (Sema-1a), mRNA Length = 4453 Score = 46.1 bits (23), Expect = 0.18 Identities = 26/27 (96%) Strand = Plus / Minus Query: 411 gtcgtgctcatcatcctcgtcatcgtc 437 ||||||||||||||| ||||||||||| Sbjct: 4072 gtcgtgctcatcatcatcgtcatcgtc 4046
>ref|NM_001069758.1| Oryza sativa (japonica cultivar-group) Os09g0425900 (Os09g0425900) mRNA, complete cds Length = 1216 Score = 46.1 bits (23), Expect = 0.18 Identities = 35/39 (89%) Strand = Plus / Plus Query: 176 cgacctctccccgattcagtctggatgctgcaagccacc 214 ||||||||||||| | |||| ||||||||||||||||| Sbjct: 591 cgacctctccccgctcgagtccggatgctgcaagccacc 629
>ref|NM_001058464.1| Oryza sativa (japonica cultivar-group) Os03g0853200 (Os03g0853200) mRNA, complete cds Length = 965 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 192 cagtctggatgctgcaagccacc 214 ||||||||||||||||||||||| Sbjct: 628 cagtctggatgctgcaagccacc 650 Score = 46.1 bits (23), Expect = 0.18 Identities = 50/59 (84%) Strand = Plus / Plus Query: 306 tggagcaacgaccagcagacgttgtgcttccagtgcgactcgtgcaaggctggcgtcct 364 |||||||||||||| || | | | |||||||||||||| || |||||||| ||| |||| Sbjct: 736 tggagcaacgaccaacaaaagctctgcttccagtgcgattcatgcaaggcaggcttcct 794
>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence Length = 23011544 Score = 46.1 bits (23), Expect = 0.18 Identities = 26/27 (96%) Strand = Plus / Minus Query: 411 gtcgtgctcatcatcctcgtcatcgtc 437 ||||||||||||||| ||||||||||| Sbjct: 8666508 gtcgtgctcatcatcatcgtcatcgtc 8666482
>gb|BT016475.1| Zea mays clone Contig308 mRNA sequence Length = 891 Score = 46.1 bits (23), Expect = 0.18 Identities = 32/35 (91%) Strand = Plus / Minus Query: 400 tcatcaacatcgtcgtgctcatcatcctcgtcatc 434 |||||| ||||||| | |||||||||||||||||| Sbjct: 200 tcatcatcatcgtcatcctcatcatcctcgtcatc 166
>gb|AY224518.1| Oryza sativa (japonica cultivar-group) isolate 20462 senescence-associated protein-like protein mRNA, complete cds Length = 831 Score = 46.1 bits (23), Expect = 0.18 Identities = 35/39 (89%) Strand = Plus / Plus Query: 176 cgacctctccccgattcagtctggatgctgcaagccacc 214 ||||||||||||| | |||| ||||||||||||||||| Sbjct: 489 cgacctctccccgctcgagtccggatgctgcaagccacc 527
>ref|NM_164830.3| Drosophila melanogaster Sema-1a CG18405-RA, transcript variant A (Sema-1a), mRNA Length = 5310 Score = 46.1 bits (23), Expect = 0.18 Identities = 26/27 (96%) Strand = Plus / Minus Query: 411 gtcgtgctcatcatcctcgtcatcgtc 437 ||||||||||||||| ||||||||||| Sbjct: 4390 gtcgtgctcatcatcatcgtcatcgtc 4364
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Minus Query: 192 cagtctggatgctgcaagccacc 214 ||||||||||||||||||||||| Sbjct: 9778491 cagtctggatgctgcaagccacc 9778469
>emb|AL513463.1|NC9G6 Neurospora crassa DNA linkage group V Cosmid contig 9G6 Length = 125561 Score = 46.1 bits (23), Expect = 0.18 Identities = 29/31 (93%) Strand = Plus / Plus Query: 407 catcgtcgtgctcatcatcctcgtcatcgtc 437 ||||||||| |||||||||||||||||||| Sbjct: 28215 catcgtcgtcatcatcatcctcgtcatcgtc 28245
>gb|AC008331.7|AC008331 Drosophila melanogaster, chromosome 2L, region 29D-29E, BAC clone BACR02B16, complete sequence Length = 186938 Score = 46.1 bits (23), Expect = 0.18 Identities = 26/27 (96%) Strand = Plus / Minus Query: 411 gtcgtgctcatcatcctcgtcatcgtc 437 ||||||||||||||| ||||||||||| Sbjct: 85201 gtcgtgctcatcatcatcgtcatcgtc 85175
>dbj|AP005095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1063H10 Length = 170453 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Minus Query: 192 cagtctggatgctgcaagccacc 214 ||||||||||||||||||||||| Sbjct: 42423 cagtctggatgctgcaagccacc 42401
>ref|XM_956213.1| Neurospora crassa OR74A hypothetical protein (NCU04150.1) partial mRNA Length = 975 Score = 46.1 bits (23), Expect = 0.18 Identities = 29/31 (93%) Strand = Plus / Minus Query: 407 catcgtcgtgctcatcatcctcgtcatcgtc 437 ||||||||| |||||||||||||||||||| Sbjct: 829 catcgtcgtcatcatcatcctcgtcatcgtc 799
>dbj|AK109128.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-D07, full insert sequence Length = 970 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 192 cagtctggatgctgcaagccacc 214 ||||||||||||||||||||||| Sbjct: 633 cagtctggatgctgcaagccacc 655 Score = 46.1 bits (23), Expect = 0.18 Identities = 50/59 (84%) Strand = Plus / Plus Query: 306 tggagcaacgaccagcagacgttgtgcttccagtgcgactcgtgcaaggctggcgtcct 364 |||||||||||||| || | | | |||||||||||||| || |||||||| ||| |||| Sbjct: 741 tggagcaacgaccaacaaaagctctgcttccagtgcgattcatgcaaggcaggcttcct 799
>dbj|AK106158.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A07, full insert sequence Length = 1201 Score = 46.1 bits (23), Expect = 0.18 Identities = 35/39 (89%) Strand = Plus / Plus Query: 176 cgacctctccccgattcagtctggatgctgcaagccacc 214 ||||||||||||| | |||| ||||||||||||||||| Sbjct: 589 cgacctctccccgctcgagtccggatgctgcaagccacc 627
>emb|BX828681.1|CNS0A2IF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL29ZF09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 922 Score = 46.1 bits (23), Expect = 0.18 Identities = 26/27 (96%) Strand = Plus / Plus Query: 190 ttcagtctggatgctgcaagccaccga 216 ||||||||||||||||||| ||||||| Sbjct: 411 ttcagtctggatgctgcaaaccaccga 437
>dbj|AK061801.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-H10, full insert sequence Length = 1216 Score = 46.1 bits (23), Expect = 0.18 Identities = 35/39 (89%) Strand = Plus / Plus Query: 176 cgacctctccccgattcagtctggatgctgcaagccacc 214 ||||||||||||| | |||| ||||||||||||||||| Sbjct: 591 cgacctctccccgctcgagtccggatgctgcaagccacc 629
>gb|AF082030.1|AF082030 Hemerocallis hybrid cultivar senescence-associated protein 5 (SA5) mRNA, complete cds Length = 1094 Score = 46.1 bits (23), Expect = 0.18 Identities = 23/23 (100%) Strand = Plus / Plus Query: 189 attcagtctggatgctgcaagcc 211 ||||||||||||||||||||||| Sbjct: 569 attcagtctggatgctgcaagcc 591
>gb|L26082.1|DRODSEM Drosophila melanogastor semaphorin-I (Dsema-I) mRNA, complete cds Length = 8024 Score = 46.1 bits (23), Expect = 0.18 Identities = 26/27 (96%) Strand = Plus / Minus Query: 411 gtcgtgctcatcatcctcgtcatcgtc 437 ||||||||||||||| ||||||||||| Sbjct: 3095 gtcgtgctcatcatcatcgtcatcgtc 3069 Score = 46.1 bits (23), Expect = 0.18 Identities = 26/27 (96%) Strand = Plus / Minus Query: 411 gtcgtgctcatcatcctcgtcatcgtc 437 ||||||||||||||| ||||||||||| Sbjct: 7107 gtcgtgctcatcatcatcgtcatcgtc 7081
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 44.1 bits (22), Expect = 0.71 Identities = 22/22 (100%) Strand = Plus / Minus Query: 437 ctacgtcgccggctgcgccgcg 458 |||||||||||||||||||||| Sbjct: 1959565 ctacgtcgccggctgcgccgcg 1959544
>dbj|AK236853.1| Sus scrofa mRNA, clone:PBL010025D01, expressed in periphral blood mononuclear cell Length = 1460 Score = 42.1 bits (21), Expect = 2.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 409 tcgtcgtgctcatcatcctcgtcatcgtc 437 ||||||| |||||||||||||||||||| Sbjct: 1202 tcgtcgtcgtcatcatcctcgtcatcgtc 1174
>ref|XM_001173773.1| PREDICTED: Pan troglodytes potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1, transcript variant 3 (KCNN1), mRNA Length = 2708 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 ctcatcatcctcgtcatcgtc 437 ||||||||||||||||||||| Sbjct: 421 ctcatcatcctcgtcatcgtc 401
>ref|XM_524155.2| PREDICTED: Pan troglodytes potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1, transcript variant 4 (KCNN1), mRNA Length = 2771 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 ctcatcatcctcgtcatcgtc 437 ||||||||||||||||||||| Sbjct: 493 ctcatcatcctcgtcatcgtc 473
>ref|XM_001173749.1| PREDICTED: Pan troglodytes potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1, transcript variant 1 (KCNN1), mRNA Length = 1849 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 ctcatcatcctcgtcatcgtc 437 ||||||||||||||||||||| Sbjct: 493 ctcatcatcctcgtcatcgtc 473
>ref|XM_001173769.1| PREDICTED: Pan troglodytes potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1, transcript variant 2 (KCNN1), mRNA Length = 2780 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 ctcatcatcctcgtcatcgtc 437 ||||||||||||||||||||| Sbjct: 493 ctcatcatcctcgtcatcgtc 473
>ref|XM_001120155.1| PREDICTED: Apis mellifera similar to CG11966-PA (LOC724334), partial mRNA Length = 2516 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 417 ctcatcatcctcgtcatcgtc 437 ||||||||||||||||||||| Sbjct: 413 ctcatcatcctcgtcatcgtc 433
>ref|XM_001115129.1| PREDICTED: Macaca mulatta potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1 (KCNN1), mRNA Length = 1518 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 ctcatcatcctcgtcatcgtc 437 ||||||||||||||||||||| Sbjct: 330 ctcatcatcctcgtcatcgtc 310
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 364 tggccggcatcaagaagagct 384 ||||||||||||||||||||| Sbjct: 1131975 tggccggcatcaagaagagct 1131955
>ref|NM_002248.3| Homo sapiens potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1 (KCNN1), mRNA Length = 2657 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 ctcatcatcctcgtcatcgtc 437 ||||||||||||||||||||| Sbjct: 529 ctcatcatcctcgtcatcgtc 509
>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete sequence Length = 2105742 Score = 42.1 bits (21), Expect = 2.8 Identities = 36/41 (87%) Strand = Plus / Minus Query: 397 ccatcatcaacatcgtcgtgctcatcatcctcgtcatcgtc 437 ||||||||| ||||||| | ||||| |||||||||||||| Sbjct: 1658107 ccatcatcatcatcgtcctcgtcatcgtcctcgtcatcgtc 1658067
>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence Length = 236455 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 401 catcaacatcgtcgtgctcatcatc 425 ||||||||||||||||||| ||||| Sbjct: 71565 catcaacatcgtcgtgctcgtcatc 71589
>gb|AC132118.3| Mus musculus BAC clone RP23-467C14 from chromosome 5, complete sequence Length = 175070 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 704 agggaaggtgttcttggatcg 724 ||||||||||||||||||||| Sbjct: 141153 agggaaggtgttcttggatcg 141133
>gb|AC162802.4| Mus musculus BAC clone RP23-363M4 from chromosome 5, complete sequence Length = 234206 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 704 agggaaggtgttcttggatcg 724 ||||||||||||||||||||| Sbjct: 77740 agggaaggtgttcttggatcg 77720
>gb|BC075037.2| Homo sapiens potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1, mRNA (cDNA clone MGC:104011 IMAGE:30915422), complete cds Length = 1691 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 ctcatcatcctcgtcatcgtc 437 ||||||||||||||||||||| Sbjct: 239 ctcatcatcctcgtcatcgtc 219
>ref|XM_460054.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E18040g) partial mRNA Length = 1824 Score = 42.1 bits (21), Expect = 2.8 Identities = 36/41 (87%) Strand = Plus / Minus Query: 397 ccatcatcaacatcgtcgtgctcatcatcctcgtcatcgtc 437 ||||||||||| || |||| ||||||||| || |||||||| Sbjct: 1607 ccatcatcaacctcttcgttctcatcatcgtcatcatcgtc 1567
>ref|XM_756696.1| Ustilago maydis 521 hypothetical protein (UM05642.1) partial mRNA Length = 4404 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 426 ctcgtcatcgtctacgtcgcc 446 ||||||||||||||||||||| Sbjct: 4327 ctcgtcatcgtctacgtcgcc 4347
>ref|NM_001027854.1| Caenorhabditis elegans GRound-Like (grd related) family member (grl-25) (grl-25) mRNA, complete cds Length = 2394 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 407 catcgtcgtgctcatcatcctcgtc 431 |||||||| |||||||||||||||| Sbjct: 1199 catcgtcgagctcatcatcctcgtc 1223
>emb|Z12018.1|CEZK638 Caenorhabditis elegans Cosmid ZK638, complete sequence Length = 1762 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 407 catcgtcgtgctcatcatcctcgtc 431 |||||||| |||||||||||||||| Sbjct: 284 catcgtcgagctcatcatcctcgtc 308
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 2.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 338 gtgcgactcgtgcaaggctggcgtcctgg 366 |||||||||||||||||| ||||| |||| Sbjct: 43178352 gtgcgactcgtgcaaggccggcgtgctgg 43178380
>gb|AC020904.7| Homo sapiens chromosome 19 clone CTB-52I2, complete sequence Length = 148824 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 ctcatcatcctcgtcatcgtc 437 ||||||||||||||||||||| Sbjct: 19975 ctcatcatcctcgtcatcgtc 19955
>dbj|AP003228.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0020E09 Length = 149195 Score = 42.1 bits (21), Expect = 2.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 338 gtgcgactcgtgcaaggctggcgtcctgg 366 |||||||||||||||||| ||||| |||| Sbjct: 65807 gtgcgactcgtgcaaggccggcgtgctgg 65835
>dbj|AB198191.1| Homo sapiens KCNN1 mRNA for small-conductance calcium-activated potassium channel, complete cds Length = 1629 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 ctcatcatcctcgtcatcgtc 437 ||||||||||||||||||||| Sbjct: 273 ctcatcatcctcgtcatcgtc 253
>emb|Z26879.1|SCRPS8SFC S.cerevisiae genes for small subunit ribosomal protein S8, splicing factor, and chaperone Length = 7468 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 414 gtgctcatcatcctcgtcatc 434 ||||||||||||||||||||| Sbjct: 2200 gtgctcatcatcctcgtcatc 2220
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 155 cgccgtcgtcttctacggccgcgac 179 ||||| ||||||||||||||||||| Sbjct: 2974089 cgccgccgtcttctacggccgcgac 2974065
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii Length = 2037969 Score = 42.1 bits (21), Expect = 2.8 Identities = 36/41 (87%) Strand = Plus / Plus Query: 397 ccatcatcaacatcgtcgtgctcatcatcctcgtcatcgtc 437 ||||||||||| || |||| ||||||||| || |||||||| Sbjct: 1398620 ccatcatcaacctcttcgttctcatcatcgtcatcatcgtc 1398660
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 28 ctccgcggccgcgtcgccgaccccg 52 ||||||||||||||||||| ||||| Sbjct: 62825 ctccgcggccgcgtcgccgtccccg 62849
>ref|XM_569760.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNC05550) partial mRNA Length = 2268 Score = 42.1 bits (21), Expect = 2.8 Identities = 36/41 (87%) Strand = Plus / Minus Query: 397 ccatcatcaacatcgtcgtgctcatcatcctcgtcatcgtc 437 ||||||||| ||||||| | ||||| |||||||||||||| Sbjct: 1958 ccatcatcatcatcgtcctcgtcatcgtcctcgtcatcgtc 1918
>gb|U69883.2|HSU69883 Homo sapiens small-conductance, calcium-activated potassium channel SK1 (KCNN1) mRNA, complete cds Length = 2535 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 ctcatcatcctcgtcatcgtc 437 ||||||||||||||||||||| Sbjct: 539 ctcatcatcctcgtcatcgtc 519
>gb|DQ331554.1| Synthetic construct Saccharomyces cerevisiae clone FLH202157.01X AAR2 gene, complete sequence Length = 1068 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtgctcatcatcctcgtcatc 434 ||||||||||||||||||||| Sbjct: 1026 gtgctcatcatcctcgtcatc 1006
>emb|Z35835.1|SCYBL074C S.cerevisiae chromosome II reading frame ORF YBL074c Length = 2077 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 414 gtgctcatcatcctcgtcatc 434 ||||||||||||||||||||| Sbjct: 316 gtgctcatcatcctcgtcatc 336
>gb|AF131940.1|HSKCNN03 Homo sapiens small-conductance calcium-activated potassium channel 1 (KCNN1) gene, exon 3 Length = 1481 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 ctcatcatcctcgtcatcgtc 437 ||||||||||||||||||||| Sbjct: 731 ctcatcatcctcgtcatcgtc 711
>dbj|D90455.1|YSCAAR2 Saccharomyces cerevisiae AAR2 gene, complete cds Length = 2652 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtgctcatcatcctcgtcatc 434 ||||||||||||||||||||| Sbjct: 1722 gtgctcatcatcctcgtcatc 1702
>gb|M36115.1|YSCSSA3A S.cerevisiae heat shock protein gene (SSA3) Length = 1220 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 gtgctcatcatcctcgtcatc 434 ||||||||||||||||||||| Sbjct: 800 gtgctcatcatcctcgtcatc 780 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 92,060,485 Number of extensions: 4813524 Number of successful extensions: 102495 Number of sequences better than 10.0: 85 Number of HSP's gapped: 102480 Number of HSP's successfully gapped: 109 Length of query: 743 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 721 Effective length of database: 18,508,616,841 Effective search space: 13344712742361 Effective search space used: 13344712742361 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)