ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf79j02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK066210:Os08g0566600 199 1e-51
2AK061598:Os08g0566600 199 1e-51
3AK108579:Os01g0219200 32 0.55
4AK120191:Os11g0603200 29 2.7
5AK100603:Os04g0579200 29 3.6
6AK070131:Os01g0120500 29 3.6
7Os02g0225500:Os02g0225500 28 6.1
8AK065543:Os12g0638600 28 7.9

>AK066210:Os08g0566600 |
          Length = 125
 Score =  199 bits (507), Expect = 1e-51
 Identities = 107/124 (86%), Positives = 111/124 (89%), Gaps = 1/124 (0%)
 Frame = +3

Query: 84  AEMTASVSY-GLRALPTWSSSVSGDDHCSALAMSVSARPRSARPLRTPARMGNVNEGKGI 260
           A   +SVS  G RALPTWSSSVSGD H  AL+ S +ARPRSARPLR PARMGNVNEGKGI
Sbjct: 3   AAAASSVSLPGARALPTWSSSVSGDSHSLALS-SWAARPRSARPLRAPARMGNVNEGKGI 61

Query: 261 FAPLVVVVRNIVGRKRFNQLRGKAIALHSQVITEFCKTIGADPKQRQGLIRLAKKNGEKL 440
           FAP+VVVVRNIVGRKRFNQLRGKAIALHSQVITEFCKTIGAD KQRQGLIRLAKKNGEKL
Sbjct: 62  FAPVVVVVRNIVGRKRFNQLRGKAIALHSQVITEFCKTIGADAKQRQGLIRLAKKNGEKL 121

Query: 441 GFLA 452
           GFLA
Sbjct: 122 GFLA 125



to top

>AK061598:Os08g0566600 |
          Length = 125

 Score =  199 bits (507), Expect = 1e-51
 Identities = 107/124 (86%), Positives = 111/124 (89%), Gaps = 1/124 (0%)
 Frame = +3

Query: 84  AEMTASVSY-GLRALPTWSSSVSGDDHCSALAMSVSARPRSARPLRTPARMGNVNEGKGI 260
           A   +SVS  G RALPTWSSSVSGD H  AL+ S +ARPRSARPLR PARMGNVNEGKGI
Sbjct: 3   AAAASSVSLPGARALPTWSSSVSGDSHSLALS-SWAARPRSARPLRAPARMGNVNEGKGI 61

Query: 261 FAPLVVVVRNIVGRKRFNQLRGKAIALHSQVITEFCKTIGADPKQRQGLIRLAKKNGEKL 440
           FAP+VVVVRNIVGRKRFNQLRGKAIALHSQVITEFCKTIGAD KQRQGLIRLAKKNGEKL
Sbjct: 62  FAPVVVVVRNIVGRKRFNQLRGKAIALHSQVITEFCKTIGADAKQRQGLIRLAKKNGEKL 121

Query: 441 GFLA 452
           GFLA
Sbjct: 122 GFLA 125



to top

>AK108579:Os01g0219200 |
          Length = 417

 Score = 31.6 bits (70), Expect = 0.55
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = +2

Query: 317 AQGQGHRAAL------PGDHRVLQDHRR*PQAEAGLDPPRQEERREARIPCLTSQSPLPS 478
           ++G+G R  +      P   RV  D    P A   L PPR+  RR+A  P   + +P P+
Sbjct: 19  SEGEGERGRMMELRKRPRPRRVDPDFVSSPPASLLLPPPRKRARRQAAPPAAPAPAPAPA 78



to top

>AK120191:Os11g0603200 |
          Length = 690

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +3

Query: 39  SPTLHGTAQRRRGRRAEMTASVSYGLRALPTWSSSVSGDDHCSALAMSVSARPRSARPLR 218
           SP+L   + RR  R A +   ++       T     + DD  S L+ S S  P S++  R
Sbjct: 23  SPSLPSPSSRRLRRHAPIHCRLTSSTTTTTTQEEQSAADDLSSLLSTSTSDEPSSSKKKR 82

Query: 219 TPARMG 236
           + +  G
Sbjct: 83  SNSSSG 88



to top

>AK100603:Os04g0579200 |
          Length = 212

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 362 VLQDHRR*PQAEAGLDPPRQEERRE--ARIPCLTSQSPLP 475
           VLQDH R  +A A   PP+Q+ RR     +P +  +  LP
Sbjct: 53  VLQDHAREHRAPAQALPPQQQHRRAEFRTVPAMVIEEVLP 92



to top

>AK070131:Os01g0120500 |
          Length = 254

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
 Frame = +3

Query: 48  LHGTAQRRRGRRAEMTAS--VSYGLRALPTWSSSVSGDD----HCSALAMSVSARPRSAR 209
           + G+  RRRGRR  + AS   S  L   P+ S S S  +      SA+A SV     +A+
Sbjct: 33  IRGSPHRRRGRRLSLAASSAASPDLEKEPSQSPSPSPQEKSPGDLSAVAESVKVLKEAAK 92

Query: 210 PLRTPA 227
             + P+
Sbjct: 93  TRKVPS 98



to top

>Os02g0225500:Os02g0225500 |
          Length = 435

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
 Frame = +3

Query: 15  LRLHHILHSPTLHGTAQRRRGRRAEMTA----SVSYGLRALPTWSSSVSGDDHCSALAMS 182
           ++ HH L   +     QRR  R + + A    +VS G+R   + SSS SG    S+L ++
Sbjct: 4   VQAHHRLFLASTCAGQQRRLLRPSRIAAPCRAAVSGGVRTAQSPSSSSSGSGSPSSLRLN 63

Query: 183 VS-ARPR-SARPLRTPARMGNVNEGKGIFAPLV--VVVRNIVGRKRFN 314
           +    PR  A P  +P     V + + I         + +I+GR+R N
Sbjct: 64  LDWVDPRVVAVPTSSPGAQVEVEKLRAIAEAAADRAEMHDIIGRQRDN 111



to top

>AK065543:Os12g0638600 |
          Length = 655

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 114 LRALPTWSSSVSGDDHCSALAMSVSARPRSARP 212
           LR+LPTW S  S    C  +   + A  R A+P
Sbjct: 452 LRSLPTWHSRTSSWSLCLKVPQPILAADRIAKP 484


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 17,868,174
Number of extensions: 383740
Number of successful extensions: 1483
Number of sequences better than 10.0: 8
Number of HSP's gapped: 1478
Number of HSP's successfully gapped: 8
Length of query: 235
Length of database: 15,399,855
Length adjustment: 97
Effective length of query: 138
Effective length of database: 11,515,878
Effective search space: 1589191164
Effective search space used: 1589191164
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top