| Clone Name | FLbaf73h16 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ549119.1|HVU549119 Hordeum vulgare subsp. vulgare mRNA for farnesylated protein 3 (fp3 gene) Length = 650 Score = 1281 bits (646), Expect = 0.0 Identities = 649/650 (99%) Strand = Plus / Plus Query: 83 atgggcgccttggatcacctctctgatttgtgcagcatgacggagacaaaggaatccctc 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atgggcgccttggatcacctctctgatttgtgcagcatgacggagacaaaggaatccctc 60 Query: 143 aagctcaggaagaagcggccacagcagacggtgaacatcaaggtgaagatggattgcgtg 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 61 aagctcaggaagaagcggccacagcagacggtgaacatcaaggtgaagatggattgcgag 120 Query: 203 ggctgcgagaggagagtcaagaacgccgtcaaatcgattcggggtgtgacgagcgtggcc 262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ggctgcgagaggagagtcaagaacgccgtcaaatcgattcggggtgtgacgagcgtggcc 180 Query: 263 gtgaaccccaagatgagcaaggtgacggtgacggggcacgtggagccgcgcaaggtgctg 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gtgaaccccaagatgagcaaggtgacggtgacggggcacgtggagccgcgcaaggtgctg 240 Query: 323 gagcgggtgaagagcaccgggaaggcggcggagatgtggccgtacgtcccctacacgctc 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gagcgggtgaagagcaccgggaaggcggcggagatgtggccgtacgtcccctacacgctc 300 Query: 383 gccacctacccctacgtcggcggtgcctacgacaagaaggcaccggcgggcttcgtccgc 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 gccacctacccctacgtcggcggtgcctacgacaagaaggcaccggcgggcttcgtccgc 360 Query: 443 agcgcaccgcaggccatggccgaccccgcggcgcctgagatccactacatgaacatgttc 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 agcgcaccgcaggccatggccgaccccgcggcgcctgagatccactacatgaacatgttc 420 Query: 503 aacgacgaggacgtcaacgcctgcaccgtcatgtgatctgatgatcttaatcaccgcctc 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 aacgacgaggacgtcaacgcctgcaccgtcatgtgatctgatgatcttaatcaccgcctc 480 Query: 563 tttctactctagccaaccggccgccgaacgaaaatacatgcttgatatgtcttcatacat 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 tttctactctagccaaccggccgccgaacgaaaatacatgcttgatatgtcttcatacat 540 Query: 623 cacaaagactgtgtgtctgtgtctatgtacatatacgttttctagctcgggagaaagcga 682 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 cacaaagactgtgtgtctgtgtctatgtacatatacgttttctagctcgggagaaagcga 600 Query: 683 taccaagaagacgagcttgtgtgcgaacagcgaatatacaaagagcgaaa 732 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 taccaagaagacgagcttgtgtgcgaacagcgaatatacaaagagcgaaa 650
>emb|AJ549118.1|HVU549118 Hordeum vulgare subsp. vulgare mRNA for farnesylated protein 2 (fp2 gene) Length = 668 Score = 541 bits (273), Expect = e-150 Identities = 411/457 (89%) Strand = Plus / Plus Query: 83 atgggcgccttggatcacctctctgatttgtgcagcatgacggagacaaaggaatccctc 142 ||||||| ||||||||||||||| ||||||||||||||||| || ||||||| | ||||| Sbjct: 1 atgggcgtcttggatcacctctccgatttgtgcagcatgacagacacaaaggcagccctc 60 Query: 143 aagctcaggaagaagcggccacagcagacggtgaacatcaaggtgaagatggattgcgtg 202 ||||||||||||| |||||||| ||||||||| |||||||||||||||||||| || | | Sbjct: 61 aagctcaggaagaggcggccactgcagacggtaaacatcaaggtgaagatggactgtgag 120 Query: 203 ggctgcgagaggagagtcaagaacgccgtcaaatcgattcggggtgtgacgagcgtggcc 262 ||||||||||| | ||||||||||||||||| |||||||||||||||||| |||| | Sbjct: 121 ggctgcgagagaaaggtcaagaacgccgtcaagtcgattcggggtgtgacggccgtgtca 180 Query: 263 gtgaaccccaagatgagcaaggtgacggtgacggggcacgtggagccgcgcaaggtgctg 322 |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct: 181 gtgaaccccaagatgagcaaggtgacggtgacggggttcgtggagccgagcaaggtgctg 240 Query: 323 gagcgggtgaagagcaccgggaaggcggcggagatgtggccgtacgtcccctacacgctc 382 | ||||||||||||||||||||||| ||| ||||||||||| ||||| || ||| ||||| Sbjct: 241 gcgcgggtgaagagcaccgggaaggtggccgagatgtggccctacgtgccatactcgctc 300 Query: 383 gccacctacccctacgtcggcggtgcctacgacaagaaggcaccggcgggcttcgtccgc 442 |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 301 accacctacccctacgtcggcggcgcctacgacaagaaggcgccggcgggcttcgtccgc 360 Query: 443 agcgcaccgcaggccatggccgaccccgcggcgcctgagatccactacatgaacatgttc 502 |||| ||||||||||||||||| || | |||||| ||| ||| ||||||||||||||| Sbjct: 361 ggcgcgccgcaggccatggccgatccaggggcgccggaggtccggtacatgaacatgttc 420 Query: 503 aacgacgaggacgtcaacgcctgcaccgtcatgtgat 539 ||||||||||||| ||| |||||||| ||||||||| Sbjct: 421 gacgacgaggacgtgaactcctgcaccatcatgtgat 457
>emb|CT830338.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109G14, full insert sequence Length = 1019 Score = 363 bits (183), Expect = 7e-97 Identities = 379/439 (86%), Gaps = 4/439 (0%) Strand = Plus / Plus Query: 100 cctctctgatttgtgcagcatgacggagacaaaggaatccctcaagctcaggaagaagcg 159 |||||||||| |||||||| |||| ||||| |||||| |||||||||| ||||||||||| Sbjct: 162 cctctctgatatgtgcagcctgacagagaccaaggaagccctcaagctaaggaagaagcg 221 Query: 160 gccacagcagacggtgaacatcaaggtgaagatggattgcgtgggctgcgagaggagagt 219 ||||| |||||||||||||||||||||||||||||| |||| ||| ||||||||||| || Sbjct: 222 gccactgcagacggtgaacatcaaggtgaagatggactgcgaggggtgcgagaggagggt 281 Query: 220 caagaacgccgtcaaatcgattcggggtgtgacgagcgtggccgtgaaccccaagatgag 279 |||||||| || || ||||| || || |||||||||||||| |||||||| ||| ||| Sbjct: 282 gaagaacgcggtgaagtcgatgcgaggggtgacgagcgtggcggtgaacccgaagcagag 341 Query: 280 caaggtg-acggtgacggggcacgtggagccgcgcaaggtgctggagcgggtgaagagca 338 | |||| |||||||| ||| |||||||| || |||||||||||||||| |||||||||| Sbjct: 342 c-cggtgcacggtgaccgggtacgtggaggcgagcaaggtgctggagcgcgtgaagagca 400 Query: 339 ccgggaaggcggcggagatgtggccgtacgtcccctacacgctcgccacctacccctacg 398 ||||||||||||||||||||||||| |||||||| ||||| | |||||||||| |||| Sbjct: 401 ccgggaaggcggcggagatgtggccctacgtcccgtacaccatgaccacctacccgtacg 460 Query: 399 tcggcggtgcctacgacaagaaggcaccggcgggcttcgtccgcagc-gcaccgcaggcc 457 ||||||| ||||||||||||||||| || || |||||||||||| || | |||| ||| Sbjct: 461 tcggcggcgcctacgacaagaaggcccccgccggcttcgtccgcggcaaccccgc-cgcc 519 Query: 458 atggccgaccccgcggcgcctgagatccactacatgaacatgttcaacgacgaggacgtc 517 |||||||||||| | || || ||| ||| |||||||| |||||||| ||||||| ||||| Sbjct: 520 atggccgacccctccgcccccgaggtccgctacatgaccatgttcagcgacgagaacgtc 579 Query: 518 aacgcctgcaccgtcatgt 536 || ||||| || |||||| Sbjct: 580 gactcctgctccatcatgt 598
>ref|NM_001049689.1| Oryza sativa (japonica cultivar-group) Os01g0507700 (Os01g0507700) mRNA, complete cds Length = 1022 Score = 363 bits (183), Expect = 7e-97 Identities = 379/439 (86%), Gaps = 4/439 (0%) Strand = Plus / Plus Query: 100 cctctctgatttgtgcagcatgacggagacaaaggaatccctcaagctcaggaagaagcg 159 |||||||||| |||||||| |||| ||||| |||||| |||||||||| ||||||||||| Sbjct: 161 cctctctgatatgtgcagcctgacagagaccaaggaagccctcaagctaaggaagaagcg 220 Query: 160 gccacagcagacggtgaacatcaaggtgaagatggattgcgtgggctgcgagaggagagt 219 ||||| |||||||||||||||||||||||||||||| |||| ||| ||||||||||| || Sbjct: 221 gccactgcagacggtgaacatcaaggtgaagatggactgcgaggggtgcgagaggagggt 280 Query: 220 caagaacgccgtcaaatcgattcggggtgtgacgagcgtggccgtgaaccccaagatgag 279 |||||||| || || ||||| || || |||||||||||||| |||||||| ||| ||| Sbjct: 281 gaagaacgcggtgaagtcgatgcgaggggtgacgagcgtggcggtgaacccgaagcagag 340 Query: 280 caaggtg-acggtgacggggcacgtggagccgcgcaaggtgctggagcgggtgaagagca 338 | |||| |||||||| ||| |||||||| || |||||||||||||||| |||||||||| Sbjct: 341 c-cggtgcacggtgaccgggtacgtggaggcgagcaaggtgctggagcgcgtgaagagca 399 Query: 339 ccgggaaggcggcggagatgtggccgtacgtcccctacacgctcgccacctacccctacg 398 ||||||||||||||||||||||||| |||||||| ||||| | |||||||||| |||| Sbjct: 400 ccgggaaggcggcggagatgtggccctacgtcccgtacaccatgaccacctacccgtacg 459 Query: 399 tcggcggtgcctacgacaagaaggcaccggcgggcttcgtccgcagc-gcaccgcaggcc 457 ||||||| ||||||||||||||||| || || |||||||||||| || | |||| ||| Sbjct: 460 tcggcggcgcctacgacaagaaggcccccgccggcttcgtccgcggcaaccccgc-cgcc 518 Query: 458 atggccgaccccgcggcgcctgagatccactacatgaacatgttcaacgacgaggacgtc 517 |||||||||||| | || || ||| ||| |||||||| |||||||| ||||||| ||||| Sbjct: 519 atggccgacccctccgcccccgaggtccgctacatgaccatgttcagcgacgagaacgtc 578 Query: 518 aacgcctgcaccgtcatgt 536 || ||||| || |||||| Sbjct: 579 gactcctgctccatcatgt 597
>dbj|AK060145.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-A06, full insert sequence Length = 1027 Score = 363 bits (183), Expect = 7e-97 Identities = 379/439 (86%), Gaps = 4/439 (0%) Strand = Plus / Plus Query: 100 cctctctgatttgtgcagcatgacggagacaaaggaatccctcaagctcaggaagaagcg 159 |||||||||| |||||||| |||| ||||| |||||| |||||||||| ||||||||||| Sbjct: 167 cctctctgatatgtgcagcctgacagagaccaaggaagccctcaagctaaggaagaagcg 226 Query: 160 gccacagcagacggtgaacatcaaggtgaagatggattgcgtgggctgcgagaggagagt 219 ||||| |||||||||||||||||||||||||||||| |||| ||| ||||||||||| || Sbjct: 227 gccactgcagacggtgaacatcaaggtgaagatggactgcgaggggtgcgagaggagggt 286 Query: 220 caagaacgccgtcaaatcgattcggggtgtgacgagcgtggccgtgaaccccaagatgag 279 |||||||| || || ||||| || || |||||||||||||| |||||||| ||| ||| Sbjct: 287 gaagaacgcggtgaagtcgatgcgaggggtgacgagcgtggcggtgaacccgaagcagag 346 Query: 280 caaggtg-acggtgacggggcacgtggagccgcgcaaggtgctggagcgggtgaagagca 338 | |||| |||||||| ||| |||||||| || |||||||||||||||| |||||||||| Sbjct: 347 c-cggtgcacggtgaccgggtacgtggaggcgagcaaggtgctggagcgcgtgaagagca 405 Query: 339 ccgggaaggcggcggagatgtggccgtacgtcccctacacgctcgccacctacccctacg 398 ||||||||||||||||||||||||| |||||||| ||||| | |||||||||| |||| Sbjct: 406 ccgggaaggcggcggagatgtggccctacgtcccgtacaccatgaccacctacccgtacg 465 Query: 399 tcggcggtgcctacgacaagaaggcaccggcgggcttcgtccgcagc-gcaccgcaggcc 457 ||||||| ||||||||||||||||| || || |||||||||||| || | |||| ||| Sbjct: 466 tcggcggcgcctacgacaagaaggcccccgccggcttcgtccgcggcaaccccgc-cgcc 524 Query: 458 atggccgaccccgcggcgcctgagatccactacatgaacatgttcaacgacgaggacgtc 517 |||||||||||| | || || ||| ||| |||||||| |||||||| ||||||| ||||| Sbjct: 525 atggccgacccctccgcccccgaggtccgctacatgaccatgttcagcgacgagaacgtc 584 Query: 518 aacgcctgcaccgtcatgt 536 || ||||| || |||||| Sbjct: 585 gactcctgctccatcatgt 603
>gb|AY108632.1| Zea mays PCO084337 mRNA sequence Length = 798 Score = 311 bits (157), Expect = 2e-81 Identities = 361/429 (84%) Strand = Plus / Plus Query: 111 tgtgcagcatgacggagacaaaggaatccctcaagctcaggaagaagcggccacagcaga 170 |||||||||| |||||||| ||||| | |||||||||||||||||||| || | ||||| Sbjct: 222 tgtgcagcatcacggagacgaaggaggcgctcaagctcaggaagaagcgaccgctgcaga 281 Query: 171 cggtgaacatcaaggtgaagatggattgcgtgggctgcgagaggagagtcaagaacgccg 230 ||||||||||||||||||||||||| |||| || |||||| | | || |||| ||| | Sbjct: 282 cggtgaacatcaaggtgaagatggactgcgaaggttgcgagcgtcgcgtgaagagcgcgg 341 Query: 231 tcaaatcgattcggggtgtgacgagcgtggccgtgaaccccaagatgagcaaggtgacgg 290 | || ||||| || || |||||||||||| | |||||| | ||| ||||||| |||| Sbjct: 342 tgaagtcgatgcgcggcgtgacgagcgtgacggtgaacgcgaagcagagcaagtgcacgg 401 Query: 291 tgacggggcacgtggagccgcgcaaggtgctggagcgggtgaagagcaccgggaaggcgg 350 |||| ||| |||||||||| ||||||||||||||| || ||| |||||| ||| | Sbjct: 402 tgaccgggtacgtggagcccgccaaggtgctggagcgcgtcaaggccaccggcaagaacg 461 Query: 351 cggagatgtggccgtacgtcccctacacgctcgccacctacccctacgtcggcggtgcct 410 | ||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |||| Sbjct: 462 ccgagatgtggccctacgtgccctacacgctcaccacctacccctacgtcggcggcgcct 521 Query: 411 acgacaagaaggcaccggcgggcttcgtccgcagcgcaccgcaggccatggccgaccccg 470 ||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||| Sbjct: 522 acgacaagaaggctcccgcgggcttcgtccgcagcgcgccgcaggccatggcagacccca 581 Query: 471 cggcgcctgagatccactacatgaacatgttcaacgacgaggacgtcaacgcctgcaccg 530 || || ||| || | |||||| |||||||| ||||||| ||||||||||||||||| Sbjct: 582 gcgctccggaggtcaagtacatgtccatgttcagcgacgagaacgtcaacgcctgcacca 641 Query: 531 tcatgtgat 539 ||||||||| Sbjct: 642 tcatgtgat 650
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 283 bits (143), Expect = 5e-73 Identities = 318/371 (85%), Gaps = 4/371 (1%) Strand = Plus / Plus Query: 168 agacggtgaacatcaaggtgaagatggattgcgtgggctgcgagaggagagtcaagaacg 227 |||||||||||||||||||||||||||| |||| ||| ||||||||||| || ||||||| Sbjct: 17737571 agacggtgaacatcaaggtgaagatggactgcgaggggtgcgagaggagggtgaagaacg 17737630 Query: 228 ccgtcaaatcgattcggggtgtgacgagcgtggccgtgaaccccaagatgagcaaggtg- 286 | || || ||||| || || |||||||||||||| |||||||| ||| |||| |||| Sbjct: 17737631 cggtgaagtcgatgcgaggggtgacgagcgtggcggtgaacccgaagcagagcc-ggtgc 17737689 Query: 287 acggtgacggggcacgtggagccgcgcaaggtgctggagcgggtgaagagcaccgggaag 346 |||||||| ||| |||||||| || |||||||||||||||| |||||||||||||||||| Sbjct: 17737690 acggtgaccgggtacgtggaggcgagcaaggtgctggagcgcgtgaagagcaccgggaag 17737749 Query: 347 gcggcggagatgtggccgtacgtcccctacacgctcgccacctacccctacgtcggcggt 406 ||||||||||||||||| |||||||| ||||| | |||||||||| ||||||||||| Sbjct: 17737750 gcggcggagatgtggccctacgtcccgtacaccatgaccacctacccgtacgtcggcggc 17737809 Query: 407 gcctacgacaagaaggcaccggcgggcttcgtccgcagc-gcaccgcaggccatggccga 465 ||||||||||||||||| || || |||||||||||| || | |||| ||||||||||| Sbjct: 17737810 gcctacgacaagaaggcccccgccggcttcgtccgcggcaaccccgc-cgccatggccga 17737868 Query: 466 ccccgcggcgcctgagatccactacatgaacatgttcaacgacgaggacgtcaacgcctg 525 |||| | || || ||| ||| |||||||| |||||||| ||||||| ||||| || |||| Sbjct: 17737869 cccctccgcccccgaggtccgctacatgaccatgttcagcgacgagaacgtcgactcctg 17737928 Query: 526 caccgtcatgt 536 | || |||||| Sbjct: 17737929 ctccatcatgt 17737939 Score = 83.8 bits (42), Expect = 9e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 100 cctctctgatttgtgcagcatgacggagacaaaggaatccctcaagctcaggaagaagcg 159 |||||||||| |||||||| |||| ||||| |||||| |||||||||| ||||||||||| Sbjct: 17737333 cctctctgatatgtgcagcctgacagagaccaaggaagccctcaagctaaggaagaagcg 17737392 Query: 160 gccacagcag 169 ||||| |||| Sbjct: 17737393 gccactgcag 17737402
>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0094H06 Length = 147245 Score = 283 bits (143), Expect = 5e-73 Identities = 318/371 (85%), Gaps = 4/371 (1%) Strand = Plus / Plus Query: 168 agacggtgaacatcaaggtgaagatggattgcgtgggctgcgagaggagagtcaagaacg 227 |||||||||||||||||||||||||||| |||| ||| ||||||||||| || ||||||| Sbjct: 119106 agacggtgaacatcaaggtgaagatggactgcgaggggtgcgagaggagggtgaagaacg 119165 Query: 228 ccgtcaaatcgattcggggtgtgacgagcgtggccgtgaaccccaagatgagcaaggtg- 286 | || || ||||| || || |||||||||||||| |||||||| ||| |||| |||| Sbjct: 119166 cggtgaagtcgatgcgaggggtgacgagcgtggcggtgaacccgaagcagagcc-ggtgc 119224 Query: 287 acggtgacggggcacgtggagccgcgcaaggtgctggagcgggtgaagagcaccgggaag 346 |||||||| ||| |||||||| || |||||||||||||||| |||||||||||||||||| Sbjct: 119225 acggtgaccgggtacgtggaggcgagcaaggtgctggagcgcgtgaagagcaccgggaag 119284 Query: 347 gcggcggagatgtggccgtacgtcccctacacgctcgccacctacccctacgtcggcggt 406 ||||||||||||||||| |||||||| ||||| | |||||||||| ||||||||||| Sbjct: 119285 gcggcggagatgtggccctacgtcccgtacaccatgaccacctacccgtacgtcggcggc 119344 Query: 407 gcctacgacaagaaggcaccggcgggcttcgtccgcagc-gcaccgcaggccatggccga 465 ||||||||||||||||| || || |||||||||||| || | |||| ||||||||||| Sbjct: 119345 gcctacgacaagaaggcccccgccggcttcgtccgcggcaaccccgc-cgccatggccga 119403 Query: 466 ccccgcggcgcctgagatccactacatgaacatgttcaacgacgaggacgtcaacgcctg 525 |||| | || || ||| ||| |||||||| |||||||| ||||||| ||||| || |||| Sbjct: 119404 cccctccgcccccgaggtccgctacatgaccatgttcagcgacgagaacgtcgactcctg 119463 Query: 526 caccgtcatgt 536 | || |||||| Sbjct: 119464 ctccatcatgt 119474 Score = 83.8 bits (42), Expect = 9e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 100 cctctctgatttgtgcagcatgacggagacaaaggaatccctcaagctcaggaagaagcg 159 |||||||||| |||||||| |||| ||||| |||||| |||||||||| ||||||||||| Sbjct: 118868 cctctctgatatgtgcagcctgacagagaccaaggaagccctcaagctaaggaagaagcg 118927 Query: 160 gccacagcag 169 ||||| |||| Sbjct: 118928 gccactgcag 118937
>gb|DQ245512.1| Zea mays clone 16559 mRNA sequence Length = 849 Score = 79.8 bits (40), Expect = 1e-11 Identities = 46/48 (95%) Strand = Plus / Plus Query: 494 aacatgttcaacgacgaggacgtcaacgcctgcaccgtcatgtgatct 541 ||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct: 545 aacatgttcaacgacgacgacgtcaacgcctgctccgtcatgtgatct 592 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 281 aaggtgacggtgacggggcacgtgga 306 |||||||||||||||||| ||||||| Sbjct: 308 aaggtgacggtgacggggtacgtgga 333
>ref|NM_001069536.1| Oryza sativa (japonica cultivar-group) Os09g0364800 (Os09g0364800) mRNA, partial cds Length = 749 Score = 71.9 bits (36), Expect = 4e-09 Identities = 114/140 (81%) Strand = Plus / Plus Query: 280 caaggtgacggtgacggggcacgtggagccgcgcaaggtgctggagcgggtgaagagcac 339 ||||||||||||| |||| ||||||||||| ||||||| || |||||||| || || Sbjct: 320 caaggtgacggtgcaggggttcgtggagccgcacaaggtggtgaagcgggtgcaggcgac 379 Query: 340 cgggaaggcggcggagatgtggccgtacgtcccctacacgctcgccacctacccctacgt 399 |||||| ||||||||| ||||| ||||| |||||||| |||| | || ||||||||| Sbjct: 380 ggggaagaaggcggagatctggccctacgtgccctacaccctcgtcgcccacccctacgc 439 Query: 400 cggcggtgcctacgacaaga 419 || | ||||||||||||| Sbjct: 440 cgccccggcctacgacaaga 459
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 71.9 bits (36), Expect = 4e-09 Identities = 114/140 (81%) Strand = Plus / Plus Query: 280 caaggtgacggtgacggggcacgtggagccgcgcaaggtgctggagcgggtgaagagcac 339 ||||||||||||| |||| ||||||||||| ||||||| || |||||||| || || Sbjct: 11923598 caaggtgacggtgcaggggttcgtggagccgcacaaggtggtgaagcgggtgcaggcgac 11923657 Query: 340 cgggaaggcggcggagatgtggccgtacgtcccctacacgctcgccacctacccctacgt 399 |||||| ||||||||| ||||| ||||| |||||||| |||| | || ||||||||| Sbjct: 11923658 ggggaagaaggcggagatctggccctacgtgccctacaccctcgtcgcccacccctacgc 11923717 Query: 400 cggcggtgcctacgacaaga 419 || | ||||||||||||| Sbjct: 11923718 cgccccggcctacgacaaga 11923737
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 71.9 bits (36), Expect = 4e-09 Identities = 114/140 (81%) Strand = Plus / Plus Query: 280 caaggtgacggtgacggggcacgtggagccgcgcaaggtgctggagcgggtgaagagcac 339 ||||||||||||| |||| ||||||||||| ||||||| || |||||||| || || Sbjct: 105088 caaggtgacggtgcaggggttcgtggagccgcacaaggtggtgaagcgggtgcaggcgac 105147 Query: 340 cgggaaggcggcggagatgtggccgtacgtcccctacacgctcgccacctacccctacgt 399 |||||| ||||||||| ||||| ||||| |||||||| |||| | || ||||||||| Sbjct: 105148 ggggaagaaggcggagatctggccctacgtgccctacaccctcgtcgcccacccctacgc 105207 Query: 400 cggcggtgcctacgacaaga 419 || | ||||||||||||| Sbjct: 105208 cgccccggcctacgacaaga 105227
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 71.9 bits (36), Expect = 4e-09 Identities = 114/140 (81%) Strand = Plus / Plus Query: 280 caaggtgacggtgacggggcacgtggagccgcgcaaggtgctggagcgggtgaagagcac 339 ||||||||||||| |||| ||||||||||| ||||||| || |||||||| || || Sbjct: 28078 caaggtgacggtgcaggggttcgtggagccgcacaaggtggtgaagcgggtgcaggcgac 28137 Query: 340 cgggaaggcggcggagatgtggccgtacgtcccctacacgctcgccacctacccctacgt 399 |||||| ||||||||| ||||| ||||| |||||||| |||| | || ||||||||| Sbjct: 28138 ggggaagaaggcggagatctggccctacgtgccctacaccctcgtcgcccacccctacgc 28197 Query: 400 cggcggtgcctacgacaaga 419 || | ||||||||||||| Sbjct: 28198 cgccccggcctacgacaaga 28217
>dbj|AK068537.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152L24, full insert sequence Length = 751 Score = 71.9 bits (36), Expect = 4e-09 Identities = 114/140 (81%) Strand = Plus / Plus Query: 280 caaggtgacggtgacggggcacgtggagccgcgcaaggtgctggagcgggtgaagagcac 339 ||||||||||||| |||| ||||||||||| ||||||| || |||||||| || || Sbjct: 322 caaggtgacggtgcaggggttcgtggagccgcacaaggtggtgaagcgggtgcaggcgac 381 Query: 340 cgggaaggcggcggagatgtggccgtacgtcccctacacgctcgccacctacccctacgt 399 |||||| ||||||||| ||||| ||||| |||||||| |||| | || ||||||||| Sbjct: 382 ggggaagaaggcggagatctggccctacgtgccctacaccctcgtcgcccacccctacgc 441 Query: 400 cggcggtgcctacgacaaga 419 || | ||||||||||||| Sbjct: 442 cgccccggcctacgacaaga 461
>ref|NM_001055323.1| Oryza sativa (japonica cultivar-group) Os03g0120400 (Os03g0120400) mRNA, complete cds Length = 1130 Score = 50.1 bits (25), Expect = 0.013 Identities = 34/37 (91%) Strand = Plus / Plus Query: 500 ttcaacgacgaggacgtcaacgcctgcaccgtcatgt 536 ||||||||||| ||||||||||||||| || |||||| Sbjct: 752 ttcaacgacgacgacgtcaacgcctgctccatcatgt 788 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 281 aaggtgacggtgacggggcacgtggag 307 |||||||||||||||||| |||||||| Sbjct: 509 aaggtgacggtgacggggtacgtggag 535
>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08, complete sequence Length = 100986 Score = 50.1 bits (25), Expect = 0.013 Identities = 34/37 (91%) Strand = Plus / Minus Query: 500 ttcaacgacgaggacgtcaacgcctgcaccgtcatgt 536 ||||||||||| ||||||||||||||| || |||||| Sbjct: 8749 ttcaacgacgacgacgtcaacgcctgctccatcatgt 8713 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Minus Query: 281 aaggtgacggtgacggggcacgtggag 307 |||||||||||||||||| |||||||| Sbjct: 8992 aaggtgacggtgacggggtacgtggag 8966
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 50.1 bits (25), Expect = 0.013 Identities = 34/37 (91%) Strand = Plus / Minus Query: 500 ttcaacgacgaggacgtcaacgcctgcaccgtcatgt 536 ||||||||||| ||||||||||||||| || |||||| Sbjct: 1105043 ttcaacgacgacgacgtcaacgcctgctccatcatgt 1105007 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Minus Query: 281 aaggtgacggtgacggggcacgtggag 307 |||||||||||||||||| |||||||| Sbjct: 1105286 aaggtgacggtgacggggtacgtggag 1105260 Score = 46.1 bits (23), Expect = 0.20 Identities = 38/43 (88%) Strand = Plus / Minus Query: 496 catgttcaacgacgaggacgtcaacgcctgcaccgtcatgtga 538 ||||||| |||||||| || ||||||||||| |||||||||| Sbjct: 12877596 catgttcgacgacgagaaccccaacgcctgcagcgtcatgtga 12877554 Score = 44.1 bits (22), Expect = 0.80 Identities = 37/42 (88%) Strand = Plus / Plus Query: 498 tgttcaacgacgaggacgtcaacgcctgcaccgtcatgtgat 539 ||||||||||||||||| |||||| ||| || ||||||||| Sbjct: 15057959 tgttcaacgacgaggaccccaacgcatgctccctcatgtgat 15058000 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 280 caaggtgacggtgacggggcacgtggagc 308 |||||||||||||||||| ||||||||| Sbjct: 3029129 caaggtgacggtgacgggttacgtggagc 3029101
>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11, complete sequence Length = 126827 Score = 50.1 bits (25), Expect = 0.013 Identities = 34/37 (91%) Strand = Plus / Minus Query: 500 ttcaacgacgaggacgtcaacgcctgcaccgtcatgt 536 ||||||||||| ||||||||||||||| || |||||| Sbjct: 125260 ttcaacgacgacgacgtcaacgcctgctccatcatgt 125224 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Minus Query: 281 aaggtgacggtgacggggcacgtggag 307 |||||||||||||||||| |||||||| Sbjct: 125503 aaggtgacggtgacggggtacgtggag 125477
>dbj|AK070517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056A13, full insert sequence Length = 1131 Score = 50.1 bits (25), Expect = 0.013 Identities = 34/37 (91%) Strand = Plus / Plus Query: 500 ttcaacgacgaggacgtcaacgcctgcaccgtcatgt 536 ||||||||||| ||||||||||||||| || |||||| Sbjct: 753 ttcaacgacgacgacgtcaacgcctgctccatcatgt 789 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 281 aaggtgacggtgacggggcacgtggag 307 |||||||||||||||||| |||||||| Sbjct: 510 aaggtgacggtgacggggtacgtggag 536
>gb|BT009077.1| Triticum aestivum clone wip1c.pk005.e10:fis, full insert mRNA sequence Length = 961 Score = 48.1 bits (24), Expect = 0.051 Identities = 36/40 (90%) Strand = Plus / Plus Query: 280 caaggtgacggtgacggggcacgtggagccgcgcaaggtg 319 ||||||||||||||||||| ||||||| ||| ||||||| Sbjct: 308 caaggtgacggtgacggggtacgtggatccggccaaggtg 347
>emb|CR855232.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0211F06-OSIGBa0153M17, complete sequence Length = 185173 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Minus Query: 280 caaggtgacggtgacggggcacgtgga 306 ||||||||||||||||||| ||||||| Sbjct: 51901 caaggtgacggtgacggggtacgtgga 51875
>gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome Length = 9965640 Score = 46.1 bits (23), Expect = 0.20 Identities = 23/23 (100%) Strand = Plus / Plus Query: 175 gaacatcaaggtgaagatggatt 197 ||||||||||||||||||||||| Sbjct: 3082828 gaacatcaaggtgaagatggatt 3082850
>ref|NM_001058839.1| Oryza sativa (japonica cultivar-group) Os04g0244800 (Os04g0244800) mRNA, complete cds Length = 801 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 280 caaggtgacggtgacggggcacgtgga 306 ||||||||||||||||||| ||||||| Sbjct: 330 caaggtgacggtgacggggtacgtgga 356
>ref|NM_001056625.1| Oryza sativa (japonica cultivar-group) Os03g0345700 (Os03g0345700) mRNA, complete cds Length = 1064 Score = 46.1 bits (23), Expect = 0.20 Identities = 38/43 (88%) Strand = Plus / Plus Query: 496 catgttcaacgacgaggacgtcaacgcctgcaccgtcatgtga 538 ||||||| |||||||| || ||||||||||| |||||||||| Sbjct: 712 catgttcgacgacgagaaccccaacgcctgcagcgtcatgtga 754
>gb|AC138109.3| Mus musculus BAC clone RP24-444I15 from chromosome 1, complete sequence Length = 209820 Score = 46.1 bits (23), Expect = 0.20 Identities = 23/23 (100%) Strand = Plus / Minus Query: 634 tgtgtctgtgtctatgtacatat 656 ||||||||||||||||||||||| Sbjct: 82929 tgtgtctgtgtctatgtacatat 82907
>gb|AC155230.2| Mus musculus BAC clone RP24-335J14 from chromosome 12, complete sequence Length = 135049 Score = 46.1 bits (23), Expect = 0.20 Identities = 23/23 (100%) Strand = Plus / Minus Query: 632 tgtgtgtctgtgtctatgtacat 654 ||||||||||||||||||||||| Sbjct: 67776 tgtgtgtctgtgtctatgtacat 67754
>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06, complete sequence Length = 132243 Score = 46.1 bits (23), Expect = 0.20 Identities = 38/43 (88%) Strand = Plus / Minus Query: 496 catgttcaacgacgaggacgtcaacgcctgcaccgtcatgtga 538 ||||||| |||||||| || ||||||||||| |||||||||| Sbjct: 119049 catgttcgacgacgagaaccccaacgcctgcagcgtcatgtga 119007
>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0094H06, from chromosome 3, complete sequence Length = 118075 Score = 46.1 bits (23), Expect = 0.20 Identities = 38/43 (88%) Strand = Plus / Plus Query: 496 catgttcaacgacgaggacgtcaacgcctgcaccgtcatgtga 538 ||||||| |||||||| || ||||||||||| |||||||||| Sbjct: 58676 catgttcgacgacgagaaccccaacgcctgcagcgtcatgtga 58718
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Minus Query: 280 caaggtgacggtgacggggcacgtgga 306 ||||||||||||||||||| ||||||| Sbjct: 9420411 caaggtgacggtgacggggtacgtgga 9420385
>gb|AC096627.28| Mus musculus strain C57BL/6J clone rp23-77b23 map 11, complete sequence Length = 264908 Score = 46.1 bits (23), Expect = 0.20 Identities = 23/23 (100%) Strand = Plus / Plus Query: 629 gactgtgtgtctgtgtctatgta 651 ||||||||||||||||||||||| Sbjct: 196057 gactgtgtgtctgtgtctatgta 196079 Score = 46.1 bits (23), Expect = 0.20 Identities = 23/23 (100%) Strand = Plus / Plus Query: 629 gactgtgtgtctgtgtctatgta 651 ||||||||||||||||||||||| Sbjct: 196123 gactgtgtgtctgtgtctatgta 196145
>emb|AL662989.3|OSJN00190 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091C12, complete sequence Length = 138715 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Minus Query: 280 caaggtgacggtgacggggcacgtgga 306 ||||||||||||||||||| ||||||| Sbjct: 18532 caaggtgacggtgacggggtacgtgga 18506
>emb|AL646093.9| Mouse DNA sequence from clone RP23-55I2 on chromosome 11 Contains the Kcnj12 gene for potassium inwardly-rectifying channel subfamily J member 12, a ribosomal protein L27a (Rpl27a) pseudogene, the Tnfrsf13b gene for tumor necrosis factor receptor superfamily member 13b, the Usp22 gene for ubiquitin specific protease 22, a ribosomal protein S13 (Rps13) pseudogene, the Aldh3a1 gene for aldehyde dehydrogenase family 3 subfamily A1, the 3' end of one variant of the Aldh3a2 gene for aldehyde dehydrogenase family 3 subfamily A2 and three CpG islands, complete sequence Length = 241400 Score = 46.1 bits (23), Expect = 0.20 Identities = 23/23 (100%) Strand = Plus / Plus Query: 629 gactgtgtgtctgtgtctatgta 651 ||||||||||||||||||||||| Sbjct: 18590 gactgtgtgtctgtgtctatgta 18612 Score = 46.1 bits (23), Expect = 0.20 Identities = 23/23 (100%) Strand = Plus / Plus Query: 629 gactgtgtgtctgtgtctatgta 651 ||||||||||||||||||||||| Sbjct: 18656 gactgtgtgtctgtgtctatgta 18678
>dbj|AK121488.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150J09, full insert sequence Length = 803 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 280 caaggtgacggtgacggggcacgtgga 306 ||||||||||||||||||| ||||||| Sbjct: 332 caaggtgacggtgacggggtacgtgga 358
>emb|AJ508227.1|HVU508227 Hordeum vulgare subsp. vulgare mRNA for farnesylated protein 1 Length = 991 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 280 caaggtgacggtgacggggcacgtgga 306 ||||||||||||||||||| ||||||| Sbjct: 311 caaggtgacggtgacggggtacgtgga 337
>dbj|AK066080.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051K22, full insert sequence Length = 1071 Score = 46.1 bits (23), Expect = 0.20 Identities = 38/43 (88%) Strand = Plus / Plus Query: 496 catgttcaacgacgaggacgtcaacgcctgcaccgtcatgtga 538 ||||||| |||||||| || ||||||||||| |||||||||| Sbjct: 717 catgttcgacgacgagaaccccaacgcctgcagcgtcatgtga 759
>ref|NM_001068297.1| Oryza sativa (japonica cultivar-group) Os08g0403300 (Os08g0403300) mRNA, complete cds Length = 453 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 357 tgtggccgtacgtcccctacac 378 |||||||||||||||||||||| Sbjct: 275 tgtggccgtacgtcccctacac 296
>ref|NM_001056784.1| Oryza sativa (japonica cultivar-group) Os03g0383900 (Os03g0383900) mRNA, complete cds Length = 948 Score = 44.1 bits (22), Expect = 0.80 Identities = 37/42 (88%) Strand = Plus / Plus Query: 498 tgttcaacgacgaggacgtcaacgcctgcaccgtcatgtgat 539 ||||||||||||||||| |||||| ||| || ||||||||| Sbjct: 583 tgttcaacgacgaggaccccaacgcatgctccctcatgtgat 624
>ref|NM_001054290.1| Oryza sativa (japonica cultivar-group) Os02g0683800 (Os02g0683800) mRNA, complete cds Length = 600 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 281 aaggtgacggtgacggggcacgtgga 306 |||||||||||||||||| ||||||| Sbjct: 233 aaggtgacggtgacggggtacgtgga 258
>gb|AC161434.2| Mus musculus chromosome 3, clone RP23-7K18, complete sequence Length = 195815 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 630 actgtgtgtctgtgtctatgtacata 655 |||||||||||| ||||||||||||| Sbjct: 48551 actgtgtgtctgagtctatgtacata 48576
>gb|AC158582.2| Mus musculus chromosome 7, clone RP24-173K12, complete sequence Length = 169636 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Minus Query: 629 gactgtgtgtctgtgtctatgt 650 |||||||||||||||||||||| Sbjct: 161544 gactgtgtgtctgtgtctatgt 161523
>gb|AC055772.16| Mus musculus chromosome 12, clone RP23-291K4, complete sequence Length = 168350 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Minus Query: 631 ctgtgtgtctgtgtctatgtacatat 656 |||||||||||||| ||||||||||| Sbjct: 153894 ctgtgtgtctgtgtatatgtacatat 153869
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 44.1 bits (22), Expect = 0.80 Identities = 37/42 (88%) Strand = Plus / Plus Query: 497 atgttcaacgacgaggacgtcaacgcctgcaccgtcatgtga 538 ||||||| ||||||| || |||||||||| ||||||||||| Sbjct: 15314332 atgttcagcgacgagaaccccaacgcctgctccgtcatgtga 15314373
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 357 tgtggccgtacgtcccctacac 378 |||||||||||||||||||||| Sbjct: 19238068 tgtggccgtacgtcccctacac 19238089
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 281 aaggtgacggtgacggggcacgtgga 306 |||||||||||||||||| ||||||| Sbjct: 27978684 aaggtgacggtgacggggtacgtgga 27978709
>gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0048F08, from chromosome 3, complete sequence Length = 155790 Score = 44.1 bits (22), Expect = 0.80 Identities = 37/42 (88%) Strand = Plus / Minus Query: 498 tgttcaacgacgaggacgtcaacgcctgcaccgtcatgtgat 539 ||||||||||||||||| |||||| ||| || ||||||||| Sbjct: 91348 tgttcaacgacgaggaccccaacgcatgctccctcatgtgat 91307
>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18, complete sequence Length = 144720 Score = 44.1 bits (22), Expect = 0.80 Identities = 37/42 (88%) Strand = Plus / Plus Query: 497 atgttcaacgacgaggacgtcaacgcctgcaccgtcatgtga 538 ||||||| ||||||| || |||||||||| ||||||||||| Sbjct: 31695 atgttcagcgacgagaaccccaacgcctgctccgtcatgtga 31736
>emb|BX323579.20| Zebrafish DNA sequence from clone DKEYP-79E11 in linkage group 14, complete sequence Length = 120579 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 631 ctgtgtgtctgtgtctatgtacatat 656 |||||||||||||| ||||||||||| Sbjct: 75216 ctgtgtgtctgtgtatatgtacatat 75241
>dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1212_A08 Length = 119304 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 281 aaggtgacggtgacggggcacgtgga 306 |||||||||||||||||| ||||||| Sbjct: 22346 aaggtgacggtgacggggtacgtgga 22371
>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_G04 Length = 124666 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 281 aaggtgacggtgacggggcacgtgga 306 |||||||||||||||||| ||||||| Sbjct: 106136 aaggtgacggtgacggggtacgtgga 106161
>dbj|AP003872.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1118_A03 Length = 109873 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 357 tgtggccgtacgtcccctacac 378 |||||||||||||||||||||| Sbjct: 11081 tgtggccgtacgtcccctacac 11102
>dbj|AP005388.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04 Length = 163579 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 357 tgtggccgtacgtcccctacac 378 |||||||||||||||||||||| Sbjct: 160433 tgtggccgtacgtcccctacac 160454
>emb|BX890619.6| Zebrafish DNA sequence from clone CH211-288M1, complete sequence Length = 141754 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 631 ctgtgtgtctgtgtctatgtacatat 656 |||||||||||||| ||||||||||| Sbjct: 10409 ctgtgtgtctgtgtatatgtacatat 10434
>dbj|AK072580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023124L24, full insert sequence Length = 601 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 281 aaggtgacggtgacggggcacgtgga 306 |||||||||||||||||| ||||||| Sbjct: 234 aaggtgacggtgacggggtacgtgga 259
>dbj|AK069713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023033I19, full insert sequence Length = 949 Score = 44.1 bits (22), Expect = 0.80 Identities = 37/42 (88%) Strand = Plus / Plus Query: 498 tgttcaacgacgaggacgtcaacgcctgcaccgtcatgtgat 539 ||||||||||||||||| |||||| ||| || ||||||||| Sbjct: 584 tgttcaacgacgaggaccccaacgcatgctccctcatgtgat 625
>gb|AY110301.1| Zea mays CL15090_1 mRNA sequence Length = 861 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Minus Query: 281 aaggtgacggtgacggggcacgtgga 306 |||||||||||||||||| ||||||| Sbjct: 385 aaggtgacggtgacggggtacgtgga 360
>emb|AL845263.10| Mouse DNA sequence from clone RP23-337L20 on chromosome 2, complete sequence Length = 209967 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 626 aaagactgtgtgtctgtgtcta 647 |||||||||||||||||||||| Sbjct: 92035 aaagactgtgtgtctgtgtcta 92056
>gb|AC114988.21| Mus musculus chromosome 7, clone RP23-207N5, complete sequence Length = 196013 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Minus Query: 629 gactgtgtgtctgtgtctatgt 650 |||||||||||||||||||||| Sbjct: 97630 gactgtgtgtctgtgtctatgt 97609
>gb|DQ246098.1| Zea mays clone 16728 mRNA sequence Length = 888 Score = 42.1 bits (21), Expect = 3.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 407 gcctacgacaagaaggcaccggcgggcttcgtccgca 443 ||||||||||||||||| || || |||| |||||||| Sbjct: 470 gcctacgacaagaaggcccccgccggctacgtccgca 506
>ref|NM_001055545.1| Oryza sativa (japonica cultivar-group) Os03g0156600 (Os03g0156600) mRNA, complete cds Length = 822 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 280 caaggtgacggtgacggggcacgtggagc 308 |||||||||||||||||| ||||||||| Sbjct: 271 caaggtgacggtgacgggttacgtggagc 299
>gb|BT025570.1| Arabidopsis thaliana At1g04070 mRNA, complete cds Length = 285 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 aagagcaccgggaaggcggcg 352 ||||||||||||||||||||| Sbjct: 130 aagagcaccgggaaggcggcg 150
>ref|NM_100288.2| Arabidopsis thaliana TOM22-I (TOM22-I) mRNA, complete cds Length = 634 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 aagagcaccgggaaggcggcg 352 ||||||||||||||||||||| Sbjct: 200 aagagcaccgggaaggcggcg 220
>gb|AC118642.11| Mus musculus chromosome 18, clone RP24-112L21, complete sequence Length = 193995 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 631 ctgtgtgtctgtgtctatgta 651 ||||||||||||||||||||| Sbjct: 102685 ctgtgtgtctgtgtctatgta 102705
>gb|AC091331.14| Mus musculus chromosome 1, clone RP23-293F4, complete sequence Length = 236163 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 631 ctgtgtgtctgtgtctatgta 651 ||||||||||||||||||||| Sbjct: 139067 ctgtgtgtctgtgtctatgta 139087
>gb|AC124181.3| Mus musculus BAC clone RP23-204B12 from chromosome 18, complete sequence Length = 220244 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 631 ctgtgtgtctgtgtctatgta 651 ||||||||||||||||||||| Sbjct: 134156 ctgtgtgtctgtgtctatgta 134136
>gb|AC138682.14| Mus musculus chromosome 5, clone RP23-34L23, complete sequence Length = 241585 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 631 ctgtgtgtctgtgtctatgta 651 ||||||||||||||||||||| Sbjct: 124428 ctgtgtgtctgtgtctatgta 124448
>gb|AC121875.2| Mus musculus BAC clone RP24-125O20 from 17, complete sequence Length = 200763 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 632 tgtgtgtctgtgtctatgtac 652 ||||||||||||||||||||| Sbjct: 18766 tgtgtgtctgtgtctatgtac 18746
>gb|AC121932.2| Mus musculus BAC clone RP24-205N24 from 17, complete sequence Length = 152782 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 632 tgtgtgtctgtgtctatgtac 652 ||||||||||||||||||||| Sbjct: 5754 tgtgtgtctgtgtctatgtac 5774
>gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0011L14, complete sequence Length = 117974 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 280 caaggtgacggtgacggggcacgtggagc 308 |||||||||||||||||| ||||||||| Sbjct: 67243 caaggtgacggtgacgggttacgtggagc 67271
>dbj|AK051851.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230010K02 product:unclassifiable, full insert sequence Length = 2508 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 632 tgtgtgtctgtgtctatgtac 652 ||||||||||||||||||||| Sbjct: 1889 tgtgtgtctgtgtctatgtac 1869
>gb|AC090079.6| Homo sapiens chromosome 17, clone CTD-2535P7, complete sequence Length = 200477 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 632 tgtgtgtctgtgtctatgtacatatacgt 660 ||||||| |||||||||||||| |||||| Sbjct: 103200 tgtgtgtgtgtgtctatgtacagatacgt 103228
>emb|AL139003.9| Human DNA sequence from clone RP11-335N6 on chromosome 13q21.32-22.2 Contains a pseudogene similar to part of ribosomal protein L18 (RPL18), complete sequence Length = 109509 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tgtagttgtgtgagatcatgg 86 ||||||||||||||||||||| Sbjct: 50464 tgtagttgtgtgagatcatgg 50484
>gb|AC068303.10| Homo sapiens 3 BAC RP11-324H4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172695 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 631 ctgtgtgtctgtgtctatgta 651 ||||||||||||||||||||| Sbjct: 127857 ctgtgtgtctgtgtctatgta 127877
>gb|AC090614.5| Homo sapiens chromosome 17, clone RP11-577I13, complete sequence Length = 230956 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 632 tgtgtgtctgtgtctatgtacatatacgt 660 ||||||| |||||||||||||| |||||| Sbjct: 64452 tgtgtgtgtgtgtctatgtacagatacgt 64480
>gb|AY086260.1| Arabidopsis thaliana clone 23106 mRNA, complete sequence Length = 630 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 aagagcaccgggaaggcggcg 352 ||||||||||||||||||||| Sbjct: 201 aagagcaccgggaaggcggcg 221
>emb|AL714031.7| Zebrafish DNA sequence from clone BUSM1-60J23 in linkage group 9, complete sequence Length = 109720 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 612 tcttcatacatcacaaagact 632 ||||||||||||||||||||| Sbjct: 103311 tcttcatacatcacaaagact 103331
>gb|AC131102.3| Mus musculus BAC clone RP23-101H16 from chromosome 5, complete sequence Length = 208536 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 631 ctgtgtgtctgtgtctatgta 651 ||||||||||||||||||||| Sbjct: 146100 ctgtgtgtctgtgtctatgta 146120
>gb|AC138973.2| Homo sapiens 3 BAC CTD-2532M17 (Cal Tech Human BAC Library D) complete sequence Length = 142430 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 caagatgagcaaggtgacggt 291 ||||||||||||||||||||| Sbjct: 95825 caagatgagcaaggtgacggt 95805
>dbj|AK175541.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-96-D08 Length = 568 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 aagagcaccgggaaggcggcg 352 ||||||||||||||||||||| Sbjct: 182 aagagcaccgggaaggcggcg 202
>emb|BX571676.5| Zebrafish DNA sequence from clone DKEY-242N5 in linkage group 17, complete sequence Length = 44074 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 612 tcttcatacatcacaaagact 632 ||||||||||||||||||||| Sbjct: 20495 tcttcatacatcacaaagact 20475
>dbj|AK105367.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-G06, full insert sequence Length = 822 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 280 caaggtgacggtgacggggcacgtggagc 308 |||||||||||||||||| ||||||||| Sbjct: 271 caaggtgacggtgacgggttacgtggagc 299
>emb|BX818699.1|CNS0AEFA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL92ZH09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 561 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 aagagcaccgggaaggcggcg 352 ||||||||||||||||||||| Sbjct: 179 aagagcaccgggaaggcggcg 199
>emb|BX818651.1|CNS0ACO6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL90ZB01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 570 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 aagagcaccgggaaggcggcg 352 ||||||||||||||||||||| Sbjct: 136 aagagcaccgggaaggcggcg 156
>emb|BX818437.1|CNS0ACQ7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL79ZB01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 568 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 aagagcaccgggaaggcggcg 352 ||||||||||||||||||||| Sbjct: 136 aagagcaccgggaaggcggcg 156
>gb|AC113178.10| Mus musculus chromosome 15, clone RP23-395K11, complete sequence Length = 198803 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 631 ctgtgtgtctgtgtctatgta 651 ||||||||||||||||||||| Sbjct: 91588 ctgtgtgtctgtgtctatgta 91568
>gb|AC159269.3| Mus musculus BAC clone RP23-426N14 from chromosome 12, complete sequence Length = 184137 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 630 actgtgtgtctgtgtctatgt 650 ||||||||||||||||||||| Sbjct: 95097 actgtgtgtctgtgtctatgt 95077
>gb|AC110192.14| Mus musculus chromosome 7, clone RP23-227K15, complete sequence Length = 181287 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 632 tgtgtgtctgtgtctatgtacatatacgt 660 ||||||| ||||| ||||||||||||||| Sbjct: 61506 tgtgtgtgtgtgtgtatgtacatatacgt 61534
>gb|AC002411.1|F20D22 Arabidopsis thaliana chromosome 1 BAC F20D22 sequence, complete sequence Length = 78259 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 aagagcaccgggaaggcggcg 352 ||||||||||||||||||||| Sbjct: 74890 aagagcaccgggaaggcggcg 74910
>gb|AC111011.6| Mus musculus BAC clone RP23-424D18 from 1, complete sequence Length = 201846 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 632 tgtgtgtctgtgtctatgtacatat 656 ||||||||||||| ||||||||||| Sbjct: 41469 tgtgtgtctgtgtgtatgtacatat 41493
>emb|AL611969.15| Mouse DNA sequence from clone RP23-392K10 on chromosome 4, complete sequence Length = 174305 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 632 tgtgtgtctgtgtctatgtacatat 656 ||||||||||||| ||||||||||| Sbjct: 102491 tgtgtgtctgtgtgtatgtacatat 102467
>gb|AC003027.1| Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete sequence Length = 119914 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 aagagcaccgggaaggcggcg 352 ||||||||||||||||||||| Sbjct: 5893 aagagcaccgggaaggcggcg 5913 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 116,873,781 Number of extensions: 5989001 Number of successful extensions: 148090 Number of sequences better than 10.0: 90 Number of HSP's gapped: 148083 Number of HSP's successfully gapped: 108 Length of query: 839 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 817 Effective length of database: 18,508,616,841 Effective search space: 15121539959097 Effective search space used: 15121539959097 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)