ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf73h11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001056310.1| Oryza sativa (japonica cultivar-group) Os03g0286800 (Os03g0286800) mRNA, complete cds Length = 1874 Score = 833 bits (420), Expect = 0.0 Identities = 995/1186 (83%), Gaps = 3/1186 (0%) Strand = Plus / Plus Query: 68 cgggcggccagctgcttcttcgaggtccgcaagcgcgagatcggctcatccagctcccgc 127 |||||||| ||||||||||| |||||| ||| || ||||||||||| |||| | | ||| Sbjct: 126 cgggcggctagctgcttctttgaggtcggcaggcaagagatcggctcctccaccccgcgc 185 Query: 128 gcttcctcgtcccaaatcagcggctccgagggcctaattttgcggatgagccaatatgga 187 || |||||| || |||||||||||||||||||||| | |||||||| || |||||| Sbjct: 186 gcctcctcgcgccgaatcagcggctccgagggcctagtgatgcggatgcatcagtatgga 245 Query: 188 aagttgcgaggccatagtggctgtgttaatactgtaagcttcaatcctgctggtgacctc 247 ||||||||||||||| ||| |||||||||||||| |||||||||||||||||| ||||| Sbjct: 246 aagttgcgaggccatgatggttgtgttaatactgtcagcttcaatcctgctggtaacctc 305 Query: 248 cttgtgtctggttcagacgacacagacatcatactatgggactggcttgctaaaactaaa 307 |||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||| || Sbjct: 306 cttgtgtctggttcggacgacatggacatcatattatgggattggcttgctaaaacacaa 365 Query: 308 aaactaacttacccttctggacatcaacaaaatgtctttcatgctcgtgtgatgccattc 367 | || | |||||||||||| |||||| ||||||| || ||||||||||| |||||||| Sbjct: 366 aggctcatttacccttctggccatcaagaaaatgttttccatgctcgtgtaatgccattt 425 Query: 368 acagatgatagcaccattgtgaccgttgctgctgatggtcaggttagggtgggacaaatg 427 |||||||||||| ||||||| || ||||||||||||||||||||||| ||||||||| || Sbjct: 426 acagatgatagcgccattgtaactgttgctgctgatggtcaggttagagtgggacaactg 485 Query: 428 aagcagggtggtgaattcacaaccaaacaaattggggaacatcatgatcgtgcacataag 487 || ||||||||||| ||||||||||||||||||||| || ||||||||||||||||| Sbjct: 486 aacgagggtggtgaagtcacaaccaaacaaattggggtgcacgatgatcgtgcacataag 545 Query: 488 atggctctcgaaccgggaagtcctcacatactttacagctgtggagaggatggcttggta 547 |||| | ||||| ||||||||| ||||| ||||||| || || || ||||| |||||| Sbjct: 546 ttggccattgaaccaggaagtccttacatattttacagttgcggggaagatggtttggta 605 Query: 548 caacactttgacctgcgcagtgattcaccaataaagcttctcacctgctattcattctca 607 ||||| |||||| |||| | |||||||||||| ||||| ||| |||||||||||||||| Sbjct: 606 caacattttgacttgcggaatgattcaccaatgaagctcttcagctgctattcattctca 665 Query: 608 aatagaaggcgccgtgtacgactgaataccattgccattgacccacagaaccctaattat 667 ||||| ||||| |||||| | || |||||||||||||||||||| ||||||||||||| Sbjct: 666 aatagcaggcgtcgtgtaaggcttaataccattgccattgacccttggaaccctaattat 725 Query: 668 ttttcgattggtggctccgatgagtatgtacggctgtatgattttaggaaaataaacttg 727 |||| |||||||| || ||||||||||| ||| | |||||||| |||| ||| | ||| Sbjct: 726 ctttcaattggtggttctgatgagtatgtgcgggtatatgatttgaggagaatccagttg 785 Query: 728 gactcttcaagcaatatggacctaccagttgataccttctgccctaagcaccttcttatg 787 | |||||| | ||| ||| ||| || ||||||||||||||||||||| |||||| Sbjct: 786 ggtgcttcaaatgacatgaaccaacctgtagataccttctgccctaagcac---cttatg 842 Query: 788 ggtgggaaggtccacgtcactggtattgcatactcgtattcaagcgagatacttgtctca 847 ||||||||||||||| | ||||||||||||||||| || |||| |||||||||||||| Sbjct: 843 ggtgggaaggtccacataactggtattgcatactcctacgcaagggagatacttgtctct 902 Query: 848 tacaatgatgagcttatctacctgttccagaactatatgggtcttggtccaaatcctgaa 907 ||||||||||| | |||||| | ||||| ||| |||||||||||||||||||||||||| Sbjct: 903 tacaatgatgaacatatctatttattccaaaacaatatgggtcttggtccaaatcctgaa 962 Query: 908 tcaacacagccagagcatttggacaagctcgagcagctacaatcatactctggtcacaga 967 ||| | || ||||| ||||||| ||| ||||||| ||| ||||| | || |||||| Sbjct: 963 tcagcgcaagcagagttcttggacaggcttgagcagccacaggcatacacaggccacaga 1022 Query: 968 aatttcagaactgttaaaggagtcagtttctttggacccaataatgaatatgttttgagt 1027 |||||| |||||||||| ||||||||||| |||||||| || |||||||||| |||||| Sbjct: 1023 aatttccgaactgttaagggagtcagtttttttggaccgaacgatgaatatgtcttgagt 1082 Query: 1028 gggtcagactgcgggcatgtgttcatttggaggaaaaagggaggtaagttgatgaggatg 1087 || || || || ||| |||| || | ||||| || ||||||||| | | |||||||| Sbjct: 1083 ggatcggattgtgggaatgtatttgtatggagaaagaagggaggtgaactattgaggatg 1142 Query: 1088 atgcgtggcgataaatacgtcgttaattgcatcgaaccccatcctcattttccgtttcta 1147 |||| ||| || ||| || ||||||||||| ||||||||||| ||||||||||| ||| Sbjct: 1143 atgcatggtgacaaaagtgtagttaattgcattgaaccccatccacattttccgttccta 1202 Query: 1148 gctactagtgggatcgacaaaagcataaagacttggacaccttcgtcaagcaaagtgatg 1207 |||||||||||||| ||||||| | |||| |||||||||||| ||| ||||||||| Sbjct: 1203 gctactagtgggattgacaaaactgtcaagatttggacaccttcagcaaataaagtgatg 1262 Query: 1208 ccattgcctcaatatgcaaatcaaataatagcgtcaaacgagcggg 1253 | ||||| || | ||||| ||||||||||| || ||| |||||| Sbjct: 1263 tcgctgcctaaaaacgcaaagcaaataatagcttccaacaagcggg 1308 Score = 85.7 bits (43), Expect = 6e-13 Identities = 154/191 (80%) Strand = Plus / Plus Query: 1284 tgacgctttcatcagacgtcatgatgcgtgtcttaagattgcaaagcagacgatctgaat 1343 ||||||||||||| ||| |||| |||| ||| || || ||||| || |||| ||||||| Sbjct: 1339 tgacgctttcatccgacctcatcatgcatgttttgaggttgcagaggagacagtctgaat 1398 Query: 1344 tgtatgcaaatcatgaaccatctgctgccgattttgcaactggtggtgatgagactttct 1403 |||| | ||||||||| || |||| ||||| |||| || || ||||||| |||||| Sbjct: 1399 tgtacagggagcatgaaccagctactgcagatttggcaagtgatgatgatgagtctttct 1458 Query: 1404 tcattgggcttggtgatggtgataggaaccaaagatcgaactctgatcccagggaatgca 1463 || |||| ||| ||||| ||||||| |||||| ||||||||||| |||||||||| Sbjct: 1459 tcgctgggtttgatgatgccaataggaatgtaagatctaactctgatccaagggaatgca 1518 Query: 1464 ttgtgacatga 1474 ||||||||||| Sbjct: 1519 ttgtgacatga 1529
>dbj|AK111707.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012L17, full insert sequence Length = 1875 Score = 833 bits (420), Expect = 0.0 Identities = 995/1186 (83%), Gaps = 3/1186 (0%) Strand = Plus / Plus Query: 68 cgggcggccagctgcttcttcgaggtccgcaagcgcgagatcggctcatccagctcccgc 127 |||||||| ||||||||||| |||||| ||| || ||||||||||| |||| | | ||| Sbjct: 127 cgggcggctagctgcttctttgaggtcggcaggcaagagatcggctcctccaccccgcgc 186 Query: 128 gcttcctcgtcccaaatcagcggctccgagggcctaattttgcggatgagccaatatgga 187 || |||||| || |||||||||||||||||||||| | |||||||| || |||||| Sbjct: 187 gcctcctcgcgccgaatcagcggctccgagggcctagtgatgcggatgcatcagtatgga 246 Query: 188 aagttgcgaggccatagtggctgtgttaatactgtaagcttcaatcctgctggtgacctc 247 ||||||||||||||| ||| |||||||||||||| |||||||||||||||||| ||||| Sbjct: 247 aagttgcgaggccatgatggttgtgttaatactgtcagcttcaatcctgctggtaacctc 306 Query: 248 cttgtgtctggttcagacgacacagacatcatactatgggactggcttgctaaaactaaa 307 |||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||| || Sbjct: 307 cttgtgtctggttcggacgacatggacatcatattatgggattggcttgctaaaacacaa 366 Query: 308 aaactaacttacccttctggacatcaacaaaatgtctttcatgctcgtgtgatgccattc 367 | || | |||||||||||| |||||| ||||||| || ||||||||||| |||||||| Sbjct: 367 aggctcatttacccttctggccatcaagaaaatgttttccatgctcgtgtaatgccattt 426 Query: 368 acagatgatagcaccattgtgaccgttgctgctgatggtcaggttagggtgggacaaatg 427 |||||||||||| ||||||| || ||||||||||||||||||||||| ||||||||| || Sbjct: 427 acagatgatagcgccattgtaactgttgctgctgatggtcaggttagagtgggacaactg 486 Query: 428 aagcagggtggtgaattcacaaccaaacaaattggggaacatcatgatcgtgcacataag 487 || ||||||||||| ||||||||||||||||||||| || ||||||||||||||||| Sbjct: 487 aacgagggtggtgaagtcacaaccaaacaaattggggtgcacgatgatcgtgcacataag 546 Query: 488 atggctctcgaaccgggaagtcctcacatactttacagctgtggagaggatggcttggta 547 |||| | ||||| ||||||||| ||||| ||||||| || || || ||||| |||||| Sbjct: 547 ttggccattgaaccaggaagtccttacatattttacagttgcggggaagatggtttggta 606 Query: 548 caacactttgacctgcgcagtgattcaccaataaagcttctcacctgctattcattctca 607 ||||| |||||| |||| | |||||||||||| ||||| ||| |||||||||||||||| Sbjct: 607 caacattttgacttgcggaatgattcaccaatgaagctcttcagctgctattcattctca 666 Query: 608 aatagaaggcgccgtgtacgactgaataccattgccattgacccacagaaccctaattat 667 ||||| ||||| |||||| | || |||||||||||||||||||| ||||||||||||| Sbjct: 667 aatagcaggcgtcgtgtaaggcttaataccattgccattgacccttggaaccctaattat 726 Query: 668 ttttcgattggtggctccgatgagtatgtacggctgtatgattttaggaaaataaacttg 727 |||| |||||||| || ||||||||||| ||| | |||||||| |||| ||| | ||| Sbjct: 727 ctttcaattggtggttctgatgagtatgtgcgggtatatgatttgaggagaatccagttg 786 Query: 728 gactcttcaagcaatatggacctaccagttgataccttctgccctaagcaccttcttatg 787 | |||||| | ||| ||| ||| || ||||||||||||||||||||| |||||| Sbjct: 787 ggtgcttcaaatgacatgaaccaacctgtagataccttctgccctaagcac---cttatg 843 Query: 788 ggtgggaaggtccacgtcactggtattgcatactcgtattcaagcgagatacttgtctca 847 ||||||||||||||| | ||||||||||||||||| || |||| |||||||||||||| Sbjct: 844 ggtgggaaggtccacataactggtattgcatactcctacgcaagggagatacttgtctct 903 Query: 848 tacaatgatgagcttatctacctgttccagaactatatgggtcttggtccaaatcctgaa 907 ||||||||||| | |||||| | ||||| ||| |||||||||||||||||||||||||| Sbjct: 904 tacaatgatgaacatatctatttattccaaaacaatatgggtcttggtccaaatcctgaa 963 Query: 908 tcaacacagccagagcatttggacaagctcgagcagctacaatcatactctggtcacaga 967 ||| | || ||||| ||||||| ||| ||||||| ||| ||||| | || |||||| Sbjct: 964 tcagcgcaagcagagttcttggacaggcttgagcagccacaggcatacacaggccacaga 1023 Query: 968 aatttcagaactgttaaaggagtcagtttctttggacccaataatgaatatgttttgagt 1027 |||||| |||||||||| ||||||||||| |||||||| || |||||||||| |||||| Sbjct: 1024 aatttccgaactgttaagggagtcagtttttttggaccgaacgatgaatatgtcttgagt 1083 Query: 1028 gggtcagactgcgggcatgtgttcatttggaggaaaaagggaggtaagttgatgaggatg 1087 || || || || ||| |||| || | ||||| || ||||||||| | | |||||||| Sbjct: 1084 ggatcggattgtgggaatgtatttgtatggagaaagaagggaggtgaactattgaggatg 1143 Query: 1088 atgcgtggcgataaatacgtcgttaattgcatcgaaccccatcctcattttccgtttcta 1147 |||| ||| || ||| || ||||||||||| ||||||||||| ||||||||||| ||| Sbjct: 1144 atgcatggtgacaaaagtgtagttaattgcattgaaccccatccacattttccgttccta 1203 Query: 1148 gctactagtgggatcgacaaaagcataaagacttggacaccttcgtcaagcaaagtgatg 1207 |||||||||||||| ||||||| | |||| |||||||||||| ||| ||||||||| Sbjct: 1204 gctactagtgggattgacaaaactgtcaagatttggacaccttcagcaaataaagtgatg 1263 Query: 1208 ccattgcctcaatatgcaaatcaaataatagcgtcaaacgagcggg 1253 | ||||| || | ||||| ||||||||||| || ||| |||||| Sbjct: 1264 tcgctgcctaaaaacgcaaagcaaataatagcttccaacaagcggg 1309 Score = 85.7 bits (43), Expect = 6e-13 Identities = 154/191 (80%) Strand = Plus / Plus Query: 1284 tgacgctttcatcagacgtcatgatgcgtgtcttaagattgcaaagcagacgatctgaat 1343 ||||||||||||| ||| |||| |||| ||| || || ||||| || |||| ||||||| Sbjct: 1340 tgacgctttcatccgacctcatcatgcatgttttgaggttgcagaggagacagtctgaat 1399 Query: 1344 tgtatgcaaatcatgaaccatctgctgccgattttgcaactggtggtgatgagactttct 1403 |||| | ||||||||| || |||| ||||| |||| || || ||||||| |||||| Sbjct: 1400 tgtacagggagcatgaaccagctactgcagatttggcaagtgatgatgatgagtctttct 1459 Query: 1404 tcattgggcttggtgatggtgataggaaccaaagatcgaactctgatcccagggaatgca 1463 || |||| ||| ||||| ||||||| |||||| ||||||||||| |||||||||| Sbjct: 1460 tcgctgggtttgatgatgccaataggaatgtaagatctaactctgatccaagggaatgca 1519 Query: 1464 ttgtgacatga 1474 ||||||||||| Sbjct: 1520 ttgtgacatga 1530
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 396 bits (200), Expect = e-106 Identities = 529/638 (82%), Gaps = 3/638 (0%) Strand = Plus / Plus Query: 554 tttgacctgcgcagtgattcaccaataaagcttctcacctgctattcattctcaaataga 613 |||||| |||| | |||||||||||| ||||| ||| ||||||||||||||||||||| Sbjct: 9865350 tttgacttgcggaatgattcaccaatgaagctcttcagctgctattcattctcaaatagc 9865409 Query: 614 aggcgccgtgtacgactgaataccattgccattgacccacagaaccctaattatttttcg 673 ||||| |||||| | || |||||||||||||||||||| ||||||||||||| |||| Sbjct: 9865410 aggcgtcgtgtaaggcttaataccattgccattgacccttggaaccctaattatctttca 9865469 Query: 674 attggtggctccgatgagtatgtacggctgtatgattttaggaaaataaacttggactct 733 |||||||| || ||||||||||| ||| | |||||||| |||| ||| | |||| || Sbjct: 9865470 attggtggttctgatgagtatgtgcgggtatatgatttgaggagaatccagttgggtgct 9865529 Query: 734 tcaagcaatatggacctaccagttgataccttctgccctaagcaccttcttatgggtggg 793 |||| | ||| ||| ||| || |||||||||||||||||||||||| ||||||||| Sbjct: 9865530 tcaaatgacatgaaccaacctgtagataccttctgccctaagcacctt---atgggtggg 9865586 Query: 794 aaggtccacgtcactggtattgcatactcgtattcaagcgagatacttgtctcatacaat 853 ||||||||| | ||||||||||||||||| || |||| |||||||||||||| |||||| Sbjct: 9865587 aaggtccacataactggtattgcatactcctacgcaagggagatacttgtctcttacaat 9865646 Query: 854 gatgagcttatctacctgttccagaactatatgggtcttggtccaaatcctgaatcaaca 913 ||||| | |||||| | ||||| ||| ||||||||||||||||||||||||||||| | Sbjct: 9865647 gatgaacatatctatttattccaaaacaatatgggtcttggtccaaatcctgaatcagcg 9865706 Query: 914 cagccagagcatttggacaagctcgagcagctacaatcatactctggtcacagaaatttc 973 || ||||| ||||||| ||| ||||||| ||| ||||| | || |||||||||||| Sbjct: 9865707 caagcagagttcttggacaggcttgagcagccacaggcatacacaggccacagaaatttc 9865766 Query: 974 agaactgttaaaggagtcagtttctttggacccaataatgaatatgttttgagtgggtca 1033 |||||||||| ||||||||||| |||||||| || |||||||||| |||||||| || Sbjct: 9865767 cgaactgttaagggagtcagtttttttggaccgaacgatgaatatgtcttgagtggatcg 9865826 Query: 1034 gactgcgggcatgtgttcatttggaggaaaaagggaggtaagttgatgaggatgatgcgt 1093 || || ||| |||| || | ||||| || ||||||||| | | |||||||||||| | Sbjct: 9865827 gattgtgggaatgtatttgtatggagaaagaagggaggtgaactattgaggatgatgcat 9865886 Query: 1094 ggcgataaatacgtcgttaattgcatcgaaccccatcctcattttccgtttctagctact 1153 || || ||| || ||||||||||| ||||||||||| ||||||||||| ||||||||| Sbjct: 9865887 ggtgacaaaagtgtagttaattgcattgaaccccatccacattttccgttcctagctact 9865946 Query: 1154 agtgggatcgacaaaagcataaagacttggacaccttc 1191 |||||||| ||||||| | |||| |||||||||||| Sbjct: 9865947 agtgggattgacaaaactgtcaagatttggacaccttc 9865984 Score = 260 bits (131), Expect = 2e-65 Identities = 206/231 (89%) Strand = Plus / Plus Query: 182 tatggaaagttgcgaggccatagtggctgtgttaatactgtaagcttcaatcctgctggt 241 ||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||| Sbjct: 9864377 tatggaaagttgcgaggccatgatggttgtgttaatactgtcagcttcaatcctgctggt 9864436 Query: 242 gacctccttgtgtctggttcagacgacacagacatcatactatgggactggcttgctaaa 301 ||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||||| Sbjct: 9864437 aacctccttgtgtctggttcggacgacatggacatcatattatgggattggcttgctaaa 9864496 Query: 302 actaaaaaactaacttacccttctggacatcaacaaaatgtctttcatgctcgtgtgatg 361 || ||| || | |||||||||||| |||||| ||||||| || ||||||||||| ||| Sbjct: 9864497 acacaaaggctcatttacccttctggccatcaagaaaatgttttccatgctcgtgtaatg 9864556 Query: 362 ccattcacagatgatagcaccattgtgaccgttgctgctgatggtcaggtt 412 ||||| |||||||||||| ||||||| || ||||||||||||||||||||| Sbjct: 9864557 ccatttacagatgatagcgccattgtaactgttgctgctgatggtcaggtt 9864607 Score = 123 bits (62), Expect = 3e-24 Identities = 125/146 (85%) Strand = Plus / Plus Query: 407 caggttagggtgggacaaatgaagcagggtggtgaattcacaaccaaacaaattggggaa 466 |||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||||| Sbjct: 9865122 caggttagagtgggacaactgaacgagggtggtgaagtcacaaccaaacaaattggggtg 9865181 Query: 467 catcatgatcgtgcacataagatggctctcgaaccgggaagtcctcacatactttacagc 526 || ||||||||||||||||| |||| | ||||| ||||||||| ||||| ||||||| Sbjct: 9865182 cacgatgatcgtgcacataagttggccattgaaccaggaagtccttacatattttacagt 9865241 Query: 527 tgtggagaggatggcttggtacaaca 552 || || || ||||| ||||||||||| Sbjct: 9865242 tgcggggaagatggtttggtacaaca 9865267 Score = 85.7 bits (43), Expect = 6e-13 Identities = 154/191 (80%) Strand = Plus / Plus Query: 1284 tgacgctttcatcagacgtcatgatgcgtgtcttaagattgcaaagcagacgatctgaat 1343 ||||||||||||| ||| |||| |||| ||| || || ||||| || |||| ||||||| Sbjct: 9866169 tgacgctttcatccgacctcatcatgcatgttttgaggttgcagaggagacagtctgaat 9866228 Query: 1344 tgtatgcaaatcatgaaccatctgctgccgattttgcaactggtggtgatgagactttct 1403 |||| | ||||||||| || |||| ||||| |||| || || ||||||| |||||| Sbjct: 9866229 tgtacagggagcatgaaccagctactgcagatttggcaagtgatgatgatgagtctttct 9866288 Query: 1404 tcattgggcttggtgatggtgataggaaccaaagatcgaactctgatcccagggaatgca 1463 || |||| ||| ||||| ||||||| |||||| ||||||||||| |||||||||| Sbjct: 9866289 tcgctgggtttgatgatgccaataggaatgtaagatctaactctgatccaagggaatgca 9866348 Query: 1464 ttgtgacatga 1474 ||||||||||| Sbjct: 9866349 ttgtgacatga 9866359 Score = 69.9 bits (35), Expect = 3e-08 Identities = 77/91 (84%) Strand = Plus / Plus Query: 68 cgggcggccagctgcttcttcgaggtccgcaagcgcgagatcggctcatccagctcccgc 127 |||||||| ||||||||||| |||||| ||| || ||||||||||| |||| | | ||| Sbjct: 9863652 cgggcggctagctgcttctttgaggtcggcaggcaagagatcggctcctccaccccgcgc 9863711 Query: 128 gcttcctcgtcccaaatcagcggctccgagg 158 || |||||| || ||||||||||||||||| Sbjct: 9863712 gcctcctcgcgccgaatcagcggctccgagg 9863742 Score = 46.1 bits (23), Expect = 0.48 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1641 taaccgaacaaggccttaagtgg 1663 ||||||||||||||||||||||| Sbjct: 15123428 taaccgaacaaggccttaagtgg 15123406 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 17838334 gggattaaccgaacaaggcct 17838314 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 29563588 gggattaaccgaacaaggcct 29563568 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1638 gattaaccgaacaaggcctta 1658 ||||||||||||||||||||| Sbjct: 29581505 gattaaccgaacaaggcctta 29581485
>gb|AC137074.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0022M22, from chromosome 3, complete sequence Length = 124166 Score = 396 bits (200), Expect = e-106 Identities = 529/638 (82%), Gaps = 3/638 (0%) Strand = Plus / Plus Query: 554 tttgacctgcgcagtgattcaccaataaagcttctcacctgctattcattctcaaataga 613 |||||| |||| | |||||||||||| ||||| ||| ||||||||||||||||||||| Sbjct: 29618 tttgacttgcggaatgattcaccaatgaagctcttcagctgctattcattctcaaatagc 29677 Query: 614 aggcgccgtgtacgactgaataccattgccattgacccacagaaccctaattatttttcg 673 ||||| |||||| | || |||||||||||||||||||| ||||||||||||| |||| Sbjct: 29678 aggcgtcgtgtaaggcttaataccattgccattgacccttggaaccctaattatctttca 29737 Query: 674 attggtggctccgatgagtatgtacggctgtatgattttaggaaaataaacttggactct 733 |||||||| || ||||||||||| ||| | |||||||| |||| ||| | |||| || Sbjct: 29738 attggtggttctgatgagtatgtgcgggtatatgatttgaggagaatccagttgggtgct 29797 Query: 734 tcaagcaatatggacctaccagttgataccttctgccctaagcaccttcttatgggtggg 793 |||| | ||| ||| ||| || |||||||||||||||||||||||| ||||||||| Sbjct: 29798 tcaaatgacatgaaccaacctgtagataccttctgccctaagcacctt---atgggtggg 29854 Query: 794 aaggtccacgtcactggtattgcatactcgtattcaagcgagatacttgtctcatacaat 853 ||||||||| | ||||||||||||||||| || |||| |||||||||||||| |||||| Sbjct: 29855 aaggtccacataactggtattgcatactcctacgcaagggagatacttgtctcttacaat 29914 Query: 854 gatgagcttatctacctgttccagaactatatgggtcttggtccaaatcctgaatcaaca 913 ||||| | |||||| | ||||| ||| ||||||||||||||||||||||||||||| | Sbjct: 29915 gatgaacatatctatttattccaaaacaatatgggtcttggtccaaatcctgaatcagcg 29974 Query: 914 cagccagagcatttggacaagctcgagcagctacaatcatactctggtcacagaaatttc 973 || ||||| ||||||| ||| ||||||| ||| ||||| | || |||||||||||| Sbjct: 29975 caagcagagttcttggacaggcttgagcagccacaggcatacacaggccacagaaatttc 30034 Query: 974 agaactgttaaaggagtcagtttctttggacccaataatgaatatgttttgagtgggtca 1033 |||||||||| ||||||||||| |||||||| || |||||||||| |||||||| || Sbjct: 30035 cgaactgttaagggagtcagtttttttggaccgaacgatgaatatgtcttgagtggatcg 30094 Query: 1034 gactgcgggcatgtgttcatttggaggaaaaagggaggtaagttgatgaggatgatgcgt 1093 || || ||| |||| || | ||||| || ||||||||| | | |||||||||||| | Sbjct: 30095 gattgtgggaatgtatttgtatggagaaagaagggaggtgaactattgaggatgatgcat 30154 Query: 1094 ggcgataaatacgtcgttaattgcatcgaaccccatcctcattttccgtttctagctact 1153 || || ||| || ||||||||||| ||||||||||| ||||||||||| ||||||||| Sbjct: 30155 ggtgacaaaagtgtagttaattgcattgaaccccatccacattttccgttcctagctact 30214 Query: 1154 agtgggatcgacaaaagcataaagacttggacaccttc 1191 |||||||| ||||||| | |||| |||||||||||| Sbjct: 30215 agtgggattgacaaaactgtcaagatttggacaccttc 30252 Score = 260 bits (131), Expect = 2e-65 Identities = 206/231 (89%) Strand = Plus / Plus Query: 182 tatggaaagttgcgaggccatagtggctgtgttaatactgtaagcttcaatcctgctggt 241 ||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||| Sbjct: 28645 tatggaaagttgcgaggccatgatggttgtgttaatactgtcagcttcaatcctgctggt 28704 Query: 242 gacctccttgtgtctggttcagacgacacagacatcatactatgggactggcttgctaaa 301 ||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||||| Sbjct: 28705 aacctccttgtgtctggttcggacgacatggacatcatattatgggattggcttgctaaa 28764 Query: 302 actaaaaaactaacttacccttctggacatcaacaaaatgtctttcatgctcgtgtgatg 361 || ||| || | |||||||||||| |||||| ||||||| || ||||||||||| ||| Sbjct: 28765 acacaaaggctcatttacccttctggccatcaagaaaatgttttccatgctcgtgtaatg 28824 Query: 362 ccattcacagatgatagcaccattgtgaccgttgctgctgatggtcaggtt 412 ||||| |||||||||||| ||||||| || ||||||||||||||||||||| Sbjct: 28825 ccatttacagatgatagcgccattgtaactgttgctgctgatggtcaggtt 28875 Score = 123 bits (62), Expect = 3e-24 Identities = 125/146 (85%) Strand = Plus / Plus Query: 407 caggttagggtgggacaaatgaagcagggtggtgaattcacaaccaaacaaattggggaa 466 |||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||||| Sbjct: 29390 caggttagagtgggacaactgaacgagggtggtgaagtcacaaccaaacaaattggggtg 29449 Query: 467 catcatgatcgtgcacataagatggctctcgaaccgggaagtcctcacatactttacagc 526 || ||||||||||||||||| |||| | ||||| ||||||||| ||||| ||||||| Sbjct: 29450 cacgatgatcgtgcacataagttggccattgaaccaggaagtccttacatattttacagt 29509 Query: 527 tgtggagaggatggcttggtacaaca 552 || || || ||||| ||||||||||| Sbjct: 29510 tgcggggaagatggtttggtacaaca 29535 Score = 85.7 bits (43), Expect = 6e-13 Identities = 154/191 (80%) Strand = Plus / Plus Query: 1284 tgacgctttcatcagacgtcatgatgcgtgtcttaagattgcaaagcagacgatctgaat 1343 ||||||||||||| ||| |||| |||| ||| || || ||||| || |||| ||||||| Sbjct: 30437 tgacgctttcatccgacctcatcatgcatgttttgaggttgcagaggagacagtctgaat 30496 Query: 1344 tgtatgcaaatcatgaaccatctgctgccgattttgcaactggtggtgatgagactttct 1403 |||| | ||||||||| || |||| ||||| |||| || || ||||||| |||||| Sbjct: 30497 tgtacagggagcatgaaccagctactgcagatttggcaagtgatgatgatgagtctttct 30556 Query: 1404 tcattgggcttggtgatggtgataggaaccaaagatcgaactctgatcccagggaatgca 1463 || |||| ||| ||||| ||||||| |||||| ||||||||||| |||||||||| Sbjct: 30557 tcgctgggtttgatgatgccaataggaatgtaagatctaactctgatccaagggaatgca 30616 Query: 1464 ttgtgacatga 1474 ||||||||||| Sbjct: 30617 ttgtgacatga 30627 Score = 69.9 bits (35), Expect = 3e-08 Identities = 77/91 (84%) Strand = Plus / Plus Query: 68 cgggcggccagctgcttcttcgaggtccgcaagcgcgagatcggctcatccagctcccgc 127 |||||||| ||||||||||| |||||| ||| || ||||||||||| |||| | | ||| Sbjct: 27920 cgggcggctagctgcttctttgaggtcggcaggcaagagatcggctcctccaccccgcgc 27979 Query: 128 gcttcctcgtcccaaatcagcggctccgagg 158 || |||||| || ||||||||||||||||| Sbjct: 27980 gcctcctcgcgccgaatcagcggctccgagg 28010
>gb|AC134232.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0013D02, complete sequence Length = 131883 Score = 396 bits (200), Expect = e-106 Identities = 529/638 (82%), Gaps = 3/638 (0%) Strand = Plus / Minus Query: 554 tttgacctgcgcagtgattcaccaataaagcttctcacctgctattcattctcaaataga 613 |||||| |||| | |||||||||||| ||||| ||| ||||||||||||||||||||| Sbjct: 7268 tttgacttgcggaatgattcaccaatgaagctcttcagctgctattcattctcaaatagc 7209 Query: 614 aggcgccgtgtacgactgaataccattgccattgacccacagaaccctaattatttttcg 673 ||||| |||||| | || |||||||||||||||||||| ||||||||||||| |||| Sbjct: 7208 aggcgtcgtgtaaggcttaataccattgccattgacccttggaaccctaattatctttca 7149 Query: 674 attggtggctccgatgagtatgtacggctgtatgattttaggaaaataaacttggactct 733 |||||||| || ||||||||||| ||| | |||||||| |||| ||| | |||| || Sbjct: 7148 attggtggttctgatgagtatgtgcgggtatatgatttgaggagaatccagttgggtgct 7089 Query: 734 tcaagcaatatggacctaccagttgataccttctgccctaagcaccttcttatgggtggg 793 |||| | ||| ||| ||| || |||||||||||||||||||||||| ||||||||| Sbjct: 7088 tcaaatgacatgaaccaacctgtagataccttctgccctaagcacctt---atgggtggg 7032 Query: 794 aaggtccacgtcactggtattgcatactcgtattcaagcgagatacttgtctcatacaat 853 ||||||||| | ||||||||||||||||| || |||| |||||||||||||| |||||| Sbjct: 7031 aaggtccacataactggtattgcatactcctacgcaagggagatacttgtctcttacaat 6972 Query: 854 gatgagcttatctacctgttccagaactatatgggtcttggtccaaatcctgaatcaaca 913 ||||| | |||||| | ||||| ||| ||||||||||||||||||||||||||||| | Sbjct: 6971 gatgaacatatctatttattccaaaacaatatgggtcttggtccaaatcctgaatcagcg 6912 Query: 914 cagccagagcatttggacaagctcgagcagctacaatcatactctggtcacagaaatttc 973 || ||||| ||||||| ||| ||||||| ||| ||||| | || |||||||||||| Sbjct: 6911 caagcagagttcttggacaggcttgagcagccacaggcatacacaggccacagaaatttc 6852 Query: 974 agaactgttaaaggagtcagtttctttggacccaataatgaatatgttttgagtgggtca 1033 |||||||||| ||||||||||| |||||||| || |||||||||| |||||||| || Sbjct: 6851 cgaactgttaagggagtcagtttttttggaccgaacgatgaatatgtcttgagtggatcg 6792 Query: 1034 gactgcgggcatgtgttcatttggaggaaaaagggaggtaagttgatgaggatgatgcgt 1093 || || ||| |||| || | ||||| || ||||||||| | | |||||||||||| | Sbjct: 6791 gattgtgggaatgtatttgtatggagaaagaagggaggtgaactattgaggatgatgcat 6732 Query: 1094 ggcgataaatacgtcgttaattgcatcgaaccccatcctcattttccgtttctagctact 1153 || || ||| || ||||||||||| ||||||||||| ||||||||||| ||||||||| Sbjct: 6731 ggtgacaaaagtgtagttaattgcattgaaccccatccacattttccgttcctagctact 6672 Query: 1154 agtgggatcgacaaaagcataaagacttggacaccttc 1191 |||||||| ||||||| | |||| |||||||||||| Sbjct: 6671 agtgggattgacaaaactgtcaagatttggacaccttc 6634 Score = 260 bits (131), Expect = 2e-65 Identities = 206/231 (89%) Strand = Plus / Minus Query: 182 tatggaaagttgcgaggccatagtggctgtgttaatactgtaagcttcaatcctgctggt 241 ||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||| Sbjct: 8241 tatggaaagttgcgaggccatgatggttgtgttaatactgtcagcttcaatcctgctggt 8182 Query: 242 gacctccttgtgtctggttcagacgacacagacatcatactatgggactggcttgctaaa 301 ||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||||| Sbjct: 8181 aacctccttgtgtctggttcggacgacatggacatcatattatgggattggcttgctaaa 8122 Query: 302 actaaaaaactaacttacccttctggacatcaacaaaatgtctttcatgctcgtgtgatg 361 || ||| || | |||||||||||| |||||| ||||||| || ||||||||||| ||| Sbjct: 8121 acacaaaggctcatttacccttctggccatcaagaaaatgttttccatgctcgtgtaatg 8062 Query: 362 ccattcacagatgatagcaccattgtgaccgttgctgctgatggtcaggtt 412 ||||| |||||||||||| ||||||| || ||||||||||||||||||||| Sbjct: 8061 ccatttacagatgatagcgccattgtaactgttgctgctgatggtcaggtt 8011 Score = 123 bits (62), Expect = 3e-24 Identities = 125/146 (85%) Strand = Plus / Minus Query: 407 caggttagggtgggacaaatgaagcagggtggtgaattcacaaccaaacaaattggggaa 466 |||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||||| Sbjct: 7496 caggttagagtgggacaactgaacgagggtggtgaagtcacaaccaaacaaattggggtg 7437 Query: 467 catcatgatcgtgcacataagatggctctcgaaccgggaagtcctcacatactttacagc 526 || ||||||||||||||||| |||| | ||||| ||||||||| ||||| ||||||| Sbjct: 7436 cacgatgatcgtgcacataagttggccattgaaccaggaagtccttacatattttacagt 7377 Query: 527 tgtggagaggatggcttggtacaaca 552 || || || ||||| ||||||||||| Sbjct: 7376 tgcggggaagatggtttggtacaaca 7351 Score = 85.7 bits (43), Expect = 6e-13 Identities = 154/191 (80%) Strand = Plus / Minus Query: 1284 tgacgctttcatcagacgtcatgatgcgtgtcttaagattgcaaagcagacgatctgaat 1343 ||||||||||||| ||| |||| |||| ||| || || ||||| || |||| ||||||| Sbjct: 6449 tgacgctttcatccgacctcatcatgcatgttttgaggttgcagaggagacagtctgaat 6390 Query: 1344 tgtatgcaaatcatgaaccatctgctgccgattttgcaactggtggtgatgagactttct 1403 |||| | ||||||||| || |||| ||||| |||| || || ||||||| |||||| Sbjct: 6389 tgtacagggagcatgaaccagctactgcagatttggcaagtgatgatgatgagtctttct 6330 Query: 1404 tcattgggcttggtgatggtgataggaaccaaagatcgaactctgatcccagggaatgca 1463 || |||| ||| ||||| ||||||| |||||| ||||||||||| |||||||||| Sbjct: 6329 tcgctgggtttgatgatgccaataggaatgtaagatctaactctgatccaagggaatgca 6270 Query: 1464 ttgtgacatga 1474 ||||||||||| Sbjct: 6269 ttgtgacatga 6259 Score = 69.9 bits (35), Expect = 3e-08 Identities = 77/91 (84%) Strand = Plus / Minus Query: 68 cgggcggccagctgcttcttcgaggtccgcaagcgcgagatcggctcatccagctcccgc 127 |||||||| ||||||||||| |||||| ||| || ||||||||||| |||| | | ||| Sbjct: 8966 cgggcggctagctgcttctttgaggtcggcaggcaagagatcggctcctccaccccgcgc 8907 Query: 128 gcttcctcgtcccaaatcagcggctccgagg 158 || |||||| || ||||||||||||||||| Sbjct: 8906 gcctcctcgcgccgaatcagcggctccgagg 8876
>emb|AJ865073.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone SQ004T7A05 Length = 258 Score = 182 bits (92), Expect = 3e-42 Identities = 125/136 (91%) Strand = Plus / Plus Query: 1517 aggccttgttcggtttcttcaaaattggaggggtttggaagggattgggagggattaaat 1576 |||||||||||| || || |||||||| ||||||||||| |||||||||||||||||||| Sbjct: 117 aggccttgttcgattcctccaaaattgaaggggtttggaggggattgggagggattaaat 176 Query: 1577 cccctacaagtcaaattccacctcaatcccctgcattcctctctaatcccctcctcggtg 1636 ||||||||||| ||||| |||||||||||||| || |||||| |||||||||||||||| Sbjct: 177 cccctacaagttaaatttcacctcaatcccctccaatcctcttcaatcccctcctcggtg 236 Query: 1637 ggattaaccgaacaag 1652 |||||||||||||||| Sbjct: 237 ggattaaccgaacaag 252 Score = 42.1 bits (21), Expect = 7.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 1559 gattgggagggattaaatcccctacaagtcaaattcc 1595 ||||| ||||||||||||||| | |||||||||||| Sbjct: 45 gattgtgagggattaaatcccatgtaagtcaaattcc 81
>emb|AJ865072.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone SQ004T7B08 Length = 258 Score = 182 bits (92), Expect = 3e-42 Identities = 125/136 (91%) Strand = Plus / Plus Query: 1517 aggccttgttcggtttcttcaaaattggaggggtttggaagggattgggagggattaaat 1576 |||||||||||| || || |||||||| ||||||||||| |||||||||||||||||||| Sbjct: 117 aggccttgttcgattcctccaaaattgaaggggtttggaggggattgggagggattaaat 176 Query: 1577 cccctacaagtcaaattccacctcaatcccctgcattcctctctaatcccctcctcggtg 1636 ||||||||||| ||||| |||||||||||||| || |||||| |||||||||||||||| Sbjct: 177 cccctacaagttaaatttcacctcaatcccctccaatcctcttcaatcccctcctcggtg 236 Query: 1637 ggattaaccgaacaag 1652 |||||||||||||||| Sbjct: 237 ggattaaccgaacaag 252 Score = 42.1 bits (21), Expect = 7.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 1559 gattgggagggattaaatcccctacaagtcaaattcc 1595 ||||| ||||||||||||||| | |||||||||||| Sbjct: 45 gattgtgagggattaaatcccatgtaagtcaaattcc 81
>gb|DQ995511.1| Hordeum vulgare clone 509d02_c-84 genomic sequence Length = 13774 Score = 176 bits (89), Expect = 2e-40 Identities = 123/133 (92%), Gaps = 1/133 (0%) Strand = Plus / Plus Query: 1521 cttgttcggtttcttcaaaattggaggggtttggaagggattgggagggattaaatcccc 1580 ||||||||||| || |||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 8223 cttgttcggttcctccaaaattgaaggggtttggaagggattggaagggattaaatcccc 8282 Query: 1581 tacaagtcaaattccacctcaat-cccctgcattcctctctaatcccctcctcggtggga 1639 ||||||||||||||||||||||| ||||| || |||||| ||||||||||||| ||||| Sbjct: 8283 tacaagtcaaattccacctcaatccccctccaatcctcttcaatcccctcctcgatggga 8342 Query: 1640 ttaaccgaacaag 1652 ||||||||||||| Sbjct: 8343 ttaaccgaacaag 8355
>emb|AJ865074.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone SQ004T7C02 Length = 258 Score = 167 bits (84), Expect = 2e-37 Identities = 123/136 (90%) Strand = Plus / Plus Query: 1517 aggccttgttcggtttcttcaaaattggaggggtttggaagggattgggagggattaaat 1576 |||||||||||| || || |||||||| ||||||||||| |||||||||||||||||||| Sbjct: 117 aggccttgttcgattcctccaaaattgaaggggtttggaggggattgggagggattaaat 176 Query: 1577 cccctacaagtcaaattccacctcaatcccctgcattcctctctaatcccctcctcggtg 1636 ||||||||||| ||||| |||||||||||||| || |||||| ||||||||||||||| Sbjct: 177 cccctacaagttaaatttcacctcaatcccctccaatcctcttcgatcccctcctcggtg 236 Query: 1637 ggattaaccgaacaag 1652 ||||||||| |||||| Sbjct: 237 ggattaacccaacaag 252
>gb|AY112169.1| Zea mays CL6349_1 mRNA sequence Length = 1114 Score = 157 bits (79), Expect = 2e-34 Identities = 244/301 (81%), Gaps = 6/301 (1%) Strand = Plus / Plus Query: 758 gataccttctgccctaagcaccttcttatgggtgggaa------ggtccacgtcactggt 811 |||||||||||||||||||||||| ||| ||||| || ||||||| |||| || Sbjct: 199 gataccttctgccctaagcaccttattaagggtgcgagtgcgagggtccacatcaccagt 258 Query: 812 attgcatactcgtattcaagcgagatacttgtctcatacaatgatgagcttatctacctg 871 |||||||| || ||| |||| ||||||||||| || |||||||||||||||||||| || Sbjct: 259 attgcatattcctatgcaagggagatacttgtatcctacaatgatgagcttatctatttg 318 Query: 872 ttccagaactatatgggtcttggtccaaatcctgaatcaacacagccagagcatttggac 931 ||||| || |||||||||||||||||||||||| || ||| |||||||| || Sbjct: 319 ttccaacacaatatgggtcttggtccaaatcctgtgtcgacagagccagagnnnnncaac 378 Query: 932 aagctcgagcagctacaatcatactctggtcacagaaatttcagaactgttaaaggagtc 991 | ||| || |||| |||| ||||| || ||||| ||||| |||||||||| |||||| Sbjct: 379 atgcttgatcagccacaagcatacagagggcacaggaattttcgaactgttaagggagtc 438 Query: 992 agtttctttggacccaataatgaatatgttttgagtgggtcagactgcgggcatgtgttc 1051 ||||||||||||| || ||||||||||| ||||||| ||||| |||||| |||| ||| Sbjct: 439 agtttctttggacaacatgatgaatatgttgtgagtggatcagattgcgggaatgtattc 498 Query: 1052 a 1052 | Sbjct: 499 a 499 Score = 58.0 bits (29), Expect = 1e-04 Identities = 74/89 (83%) Strand = Plus / Plus Query: 569 gattcaccaataaagcttctcacctgctattcattctcaaatagaaggcgccgtgtacga 628 |||||| ||| ||||||| ||||||||| ||| |||| ||| || ||||||||| | Sbjct: 10 gattcagcaacaaagcttttcacctgctgttctttcttgaatgacagacgccgtgtaaaa 69 Query: 629 ctgaataccattgccattgacccacagaa 657 ||||||| ||||| ||||||||||||||| Sbjct: 70 ctgaatagcattgtcattgacccacagaa 98 Score = 42.1 bits (21), Expect = 7.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 1109 gttaattgcatcgaaccccatcctcattttccgtttctagctactagtgggat 1161 ||||| ||||| |||||||| || ||||| || ||| | |||||||||||||| Sbjct: 556 gttaactgcattgaaccccacccgcatttcccatttatggctactagtgggat 608
>gb|AY972619.1| Hordeum vulgare subsp. vulgare cultivar Morex subclone NRG098 cyclic nucleotide-gated ion channel 4 (Nec1) gene, complete cds Length = 9090 Score = 113 bits (57), Expect = 2e-21 Identities = 93/105 (88%) Strand = Plus / Plus Query: 1514 tttaggccttgttcggtttcttcaaaattggaggggtttggaagggattgggagggatta 1573 |||||||||||||||||||||| | ||||| ||||||||||| |||||| |||||||| Sbjct: 3669 tttaggccttgttcggtttcttgagaattgaaggggtttggaggggattacaagggatta 3728 Query: 1574 aatcccctacaagtcaaattccacctcaatcccctgcattcctct 1618 |||||||||||||||| || |||||||||||||| || |||||| Sbjct: 3729 aatcccctacaagtcatttttcacctcaatccccttcaatcctct 3773
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 85.7 bits (43), Expect = 6e-13 Identities = 71/79 (89%), Gaps = 1/79 (1%) Strand = Plus / Plus Query: 1514 tttaggccttgttcggtttcttcaaaattggaggggtttggaagggattgggagggatta 1573 |||||||||||||||||| |||||||||| || ||||| || ||||||||||| ||||| Sbjct: 56350 tttaggccttgttcggttccttcaaaattaaagaggtttagaggggattgggagagatta 56409 Query: 1574 aatcccctacaagtcaaat 1592 ||| ||||||||||||||| Sbjct: 56410 aat-ccctacaagtcaaat 56427
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 79.8 bits (40), Expect = 3e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 1545 aggggtttggaagggattgggagggattaaatcccctacaagtcaaattccacctcaatc 1604 ||||| ||||| |||||||| |||||||||||||| |||||||| ||||| |||||| Sbjct: 831 aggggattggagtggattggggaggattaaatcccctgtaagtcaaaatccacttcaatc 772 Query: 1605 ccctgcattcctctctaatcccctcctcggtgggattaaccgaacaag 1652 |||| || ||||||| |||||||| | | ||||||||||||||||| Sbjct: 771 ccctccaatcctctccaatccccttgtggtggggattaaccgaacaag 724
>gb|DQ175800.1| Hordeum vulgare clone DsA18 Ds insertion site flanking region genomic sequence Length = 540 Score = 79.8 bits (40), Expect = 3e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 1545 aggggtttggaagggattgggagggattaaatcccctacaagtcaaattccacctcaatc 1604 ||||| ||||| |||||||| |||||||||||||| |||||||| ||||| |||||| Sbjct: 171 aggggattggagtggattggggaggattaaatcccctgtaagtcaaaatccacttcaatc 112 Query: 1605 ccctgcattcctctctaatcccctcctcggtgggattaaccgaacaag 1652 |||| || ||||||| |||||||| | | ||||||||||||||||| Sbjct: 111 ccctccaatcctctccaatccccttgtggtggggattaaccgaacaag 64
>emb|AJ865018.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone SQ004T7A11 Length = 144 Score = 71.9 bits (36), Expect = 8e-09 Identities = 84/100 (84%) Strand = Plus / Plus Query: 1559 gattgggagggattaaatcccctacaagtcaaattccacctcaatcccctgcattcctct 1618 |||||||| |||||||||||| | ||||||||||| ||||||||||||| || |||| | Sbjct: 45 gattgggaaggattaaatcccgtgtaagtcaaattcgacctcaatcccctccaatccttt 104 Query: 1619 ctaatcccctcctcggtgggattaaccgaacaaggcctta 1658 | ||||| || | | ||||||||||||||||| ||||| Sbjct: 105 ccaatcctcttgtggtggggattaaccgaacaagccctta 144
>emb|AJ865016.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone SQ004T7F04 Length = 144 Score = 71.9 bits (36), Expect = 8e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 1517 aggccttgttcggtttcttcaaaattggaggggtttggaagggattgggagggattaaat 1576 ||||||||||||||| | || | ||| ||||| |||||| |||||||| ||||||||| Sbjct: 3 aggccttgttcggttgcaacagatttgaaggggattggaatggattggggaggattaaat 62 Query: 1577 cccctacaagtcaaattccacctcaatc 1604 ||||| ||||||||||| ||||||||| Sbjct: 63 cccctgtaagtcaaattcgacctcaatc 90
>emb|AJ865019.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone SQ004T7D01 Length = 144 Score = 60.0 bits (30), Expect = 3e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 1551 ttggaagggattgggagggattaaatcccctacaagtcaaattccacctcaatcccct 1608 |||||| ||||||||| ||||||||| | | ||||||||||||||||||||||||| Sbjct: 37 ttggaatggattgggaaggattaaattctgtgtaagtcaaattccacctcaatcccct 94
>emb|AJ865021.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone SQ004T7E07 Length = 144 Score = 58.0 bits (29), Expect = 1e-04 Identities = 38/41 (92%) Strand = Plus / Plus Query: 1568 ggattaaatcccctacaagtcaaattccacctcaatcccct 1608 ||||||||||||| |||| ||||||||| |||||||||||| Sbjct: 54 ggattaaatcccccacaaatcaaattcctcctcaatcccct 94
>gb|AY555142.1| Zea mays BAC clone c573F08, complete sequence Length = 181627 Score = 58.0 bits (29), Expect = 1e-04 Identities = 44/49 (89%) Strand = Plus / Minus Query: 1557 gggattgggagggattaaatcccctacaagtcaaattccacctcaatcc 1605 ||||||| | |||||| |||||||||||||||||| ||| ||||||||| Sbjct: 29465 gggattgagggggattgaatcccctacaagtcaaaatccccctcaatcc 29417
>emb|AJ865017.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone SQ004T7E08 Length = 114 Score = 54.0 bits (27), Expect = 0.002 Identities = 36/39 (92%) Strand = Plus / Plus Query: 1567 gggattaaatcccctacaagtcaaattccacctcaatcc 1605 ||||||||||||||| |||||||| ||||||||||||| Sbjct: 33 gggattaaatcccctgtaagtcaaaatccacctcaatcc 71
>emb|AJ865033.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone SQ004T7E02 Length = 135 Score = 52.0 bits (26), Expect = 0.008 Identities = 62/74 (83%) Strand = Plus / Plus Query: 1545 aggggtttggaagggattgggagggattaaatcccctacaagtcaaattccacctcaatc 1604 ||||||||| |||||||| || |||| |||||||||||||||||| |||| ||||| Sbjct: 32 aggggtttgacagggattgagatggatataatcccctacaagtcaaaactcaccacaatc 91 Query: 1605 ccctgcattcctct 1618 |||| || |||||| Sbjct: 92 ccctccaatcctct 105
>emb|AJ865032.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone SQ004T7D07 Length = 135 Score = 52.0 bits (26), Expect = 0.008 Identities = 62/74 (83%) Strand = Plus / Plus Query: 1545 aggggtttggaagggattgggagggattaaatcccctacaagtcaaattccacctcaatc 1604 ||||||||| |||||||| || |||| |||||||||||||||||| |||| ||||| Sbjct: 32 aggggtttgacagggattgagatggatataatcccctacaagtcaaaactcaccacaatc 91 Query: 1605 ccctgcattcctct 1618 |||| || |||||| Sbjct: 92 ccctccaatcctct 105
>gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0027P09, complete sequence Length = 171861 Score = 50.1 bits (25), Expect = 0.031 Identities = 25/25 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggccttaag 1660 ||||||||||||||||||||||||| Sbjct: 55368 gggattaaccgaacaaggccttaag 55392
>gb|AF544118.1| Zea mays subsp. mays cultivar Ki9 endosperm-specific sucrose synthase (shrunken1) gene, partial sequence Length = 6724 Score = 50.1 bits (25), Expect = 0.031 Identities = 34/37 (91%) Strand = Plus / Plus Query: 1556 agggattgggagggattaaatcccctacaagtcaaat 1592 |||||||| | ||||| |||||||||||||||||||| Sbjct: 2525 agggattgagggggatcaaatcccctacaagtcaaat 2561
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 50.1 bits (25), Expect = 0.031 Identities = 25/25 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggccttaag 1660 ||||||||||||||||||||||||| Sbjct: 15645687 gggattaaccgaacaaggccttaag 15645711 Score = 48.1 bits (24), Expect = 0.12 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggccttaa 1659 |||||||||||||||||||||||| Sbjct: 24191927 gggattaaccgaacaaggccttaa 24191904 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 17255357 gggattaaccgaacaaggcct 17255337
>gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1504_G04, complete sequence Length = 88812 Score = 48.1 bits (24), Expect = 0.12 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1635 tgggattaaccgaacaaggcctta 1658 |||||||||||||||||||||||| Sbjct: 68644 tgggattaaccgaacaaggcctta 68621
>gb|AC118346.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0039F06, complete sequence Length = 133022 Score = 48.1 bits (24), Expect = 0.12 Identities = 24/24 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggccttaa 1659 |||||||||||||||||||||||| Sbjct: 13499 gggattaaccgaacaaggccttaa 13522
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 48.1 bits (24), Expect = 0.12 Identities = 27/28 (96%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggccttaagtgg 1663 ||||||||||||||||||||| |||||| Sbjct: 23314391 gggattaaccgaacaaggcctaaagtgg 23314418 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggcctt 1657 |||||||||||||||||||||| Sbjct: 7232348 gggattaaccgaacaaggcctt 7232327 Score = 44.1 bits (22), Expect = 1.9 Identities = 28/30 (93%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggccttaagtggaa 1665 ||||||||| ||||||||||||||| |||| Sbjct: 24635151 gggattaacagaacaaggccttaagaggaa 24635122 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 4457143 gggattaaccgaacaaggcct 4457163 Score = 42.1 bits (21), Expect = 7.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1637 ggattaaccgaacaaggccttaagtggaa 1665 |||||||||||| ||||||| |||||||| Sbjct: 5384049 ggattaaccgaataaggcctaaagtggaa 5384077 Score = 42.1 bits (21), Expect = 7.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1637 ggattaaccgaacaaggccttaagtggaa 1665 |||||||||||| ||||||| |||||||| Sbjct: 5465347 ggattaaccgaataaggcctaaagtggaa 5465319 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggccttaag 1660 ||||||||||||||| ||||||||| Sbjct: 17699193 gggattaaccgaacatggccttaag 17699217 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 28537961 gggattaaccgaacaaggcct 28537981
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 48.1 bits (24), Expect = 0.12 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1635 tgggattaaccgaacaaggcctta 1658 |||||||||||||||||||||||| Sbjct: 2790318 tgggattaaccgaacaaggcctta 2790295 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1662 ggaagaaaactgtttggtagtg 1683 |||||||||||||||||||||| Sbjct: 16410024 ggaagaaaactgtttggtagtg 16410003 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 24159468 gggattaaccgaacaaggcct 24159448 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 24159532 gggattaaccgaacaaggcct 24159552
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 48.1 bits (24), Expect = 0.12 Identities = 36/40 (90%) Strand = Plus / Minus Query: 1591 attccacctcaatcccctgcattcctctctaatcccctcc 1630 ||||| |||||||||||| || |||||| ||||||||||| Sbjct: 10161515 attccccctcaatcccctccaatcctctttaatcccctcc 10161476 Score = 48.1 bits (24), Expect = 0.12 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggccttaa 1659 |||||||||||||||||||||||| Sbjct: 36119177 gggattaaccgaacaaggccttaa 36119154 Score = 46.1 bits (23), Expect = 0.48 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1637 ggattaaccgaacaaggccttaa 1659 ||||||||||||||||||||||| Sbjct: 6322767 ggattaaccgaacaaggccttaa 6322745 Score = 44.1 bits (22), Expect = 1.9 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggccttaagtggaa 1665 |||||||| |||||||||||||||| |||| Sbjct: 10161568 gggattaaacgaacaaggccttaagaggaa 10161597 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1641 taaccgaacaaggccttaagtggaa 1665 ||||||||||||||||||| ||||| Sbjct: 174470 taaccgaacaaggccttaattggaa 174446 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1511 atatttaggccttgttcggtt 1531 ||||||||||||||||||||| Sbjct: 174755 atatttaggccttgttcggtt 174735 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1642 aaccgaacaaggccttaagtg 1662 ||||||||||||||||||||| Sbjct: 4280350 aaccgaacaaggccttaagtg 4280330 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 23701110 gggattaaccgaacaaggcct 23701090 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 29360435 gggattaaccgaacaaggcct 29360455
>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence Length = 140234 Score = 48.1 bits (24), Expect = 0.12 Identities = 24/24 (100%) Strand = Plus / Plus Query: 1635 tgggattaaccgaacaaggcctta 1658 |||||||||||||||||||||||| Sbjct: 77222 tgggattaaccgaacaaggcctta 77245 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 77126 gggattaaccgaacaaggcct 77106
>emb|AJ430054.1|OSA430054 Oryza sativa partial myb15 gene for transcription factor, exons 1-4 Length = 1586 Score = 48.1 bits (24), Expect = 0.12 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggccttaa 1659 |||||||||||||||||||||||| Sbjct: 803 gggattaaccgaacaaggccttaa 780
>dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0581F09 Length = 154248 Score = 48.1 bits (24), Expect = 0.12 Identities = 36/40 (90%) Strand = Plus / Minus Query: 1591 attccacctcaatcccctgcattcctctctaatcccctcc 1630 ||||| |||||||||||| || |||||| ||||||||||| Sbjct: 108984 attccccctcaatcccctccaatcctctttaatcccctcc 108945 Score = 44.1 bits (22), Expect = 1.9 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggccttaagtggaa 1665 |||||||| |||||||||||||||| |||| Sbjct: 109037 gggattaaacgaacaaggccttaagaggaa 109066
>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0498A12 Length = 159749 Score = 48.1 bits (24), Expect = 0.12 Identities = 36/40 (90%) Strand = Plus / Minus Query: 1591 attccacctcaatcccctgcattcctctctaatcccctcc 1630 ||||| |||||||||||| || |||||| ||||||||||| Sbjct: 26829 attccccctcaatcccctccaatcctctttaatcccctcc 26790 Score = 44.1 bits (22), Expect = 1.9 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggccttaagtggaa 1665 |||||||| |||||||||||||||| |||| Sbjct: 26882 gggattaaacgaacaaggccttaagaggaa 26911
>dbj|AP003241.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0408C03 Length = 141273 Score = 48.1 bits (24), Expect = 0.12 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggccttaa 1659 |||||||||||||||||||||||| Sbjct: 131902 gggattaaccgaacaaggccttaa 131879
>dbj|AP003804.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1065_B06 Length = 113170 Score = 48.1 bits (24), Expect = 0.12 Identities = 27/28 (96%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggccttaagtgg 1663 ||||||||||||||||||||| |||||| Sbjct: 69649 gggattaaccgaacaaggcctaaagtgg 69676
>gb|AF466646.1| Zea mays putative transposase (Z195D10.1) gene, partial cds; glycyl-tRNA synthetase (Z195D10.2), ornithine carbamoyltransferase (Z195D10.3), putative gag protein (Z195D10.5), putative SET-domain transcriptional regulator (Z195D10.7), putative oxysterol-binding protein (Z195D10.8), putative polyprotein (Z195D10.9), putative oxysterol-binding protein (Z195D10.10), putative gag-pol polyprotein (Z195D10.11), putative phosphatidylinositol-4-phosphate-5-kinase (Z195D10.12), hypothetical protein (Z195D10.15), putative gag-pol polyprotein (Z195D10.16), putative polyprotein (Z195D10.17), putative retrotransposon protein (Z195D10.18), and prpol (Z195D10.19) genes, complete cds; and putative teosinte branched2 (Z195D10.20) gene, partial cds Length = 141939 Score = 48.1 bits (24), Expect = 0.12 Identities = 24/24 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggccttaa 1659 |||||||||||||||||||||||| Sbjct: 112300 gggattaaccgaacaaggccttaa 112323 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1641 taaccgaacaaggccttaagtg 1662 |||||||||||||||||||||| Sbjct: 130438 taaccgaacaaggccttaagtg 130417 Score = 42.1 bits (21), Expect = 7.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 1557 gggattgggagggattaaatcccctacaagtcaaatt 1593 ||||||||| ||| ||||||||| |||||||||||| Sbjct: 112222 gggattgggtgggtttaaatcccaaacaagtcaaatt 112258
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004B13 Length = 142268 Score = 48.1 bits (24), Expect = 0.12 Identities = 36/40 (90%) Strand = Plus / Minus Query: 1591 attccacctcaatcccctgcattcctctctaatcccctcc 1630 ||||| |||||||||||| || |||||| ||||||||||| Sbjct: 86114 attccccctcaatcccctccaatcctctttaatcccctcc 86075 Score = 44.1 bits (22), Expect = 1.9 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggccttaagtggaa 1665 |||||||| |||||||||||||||| |||| Sbjct: 86167 gggattaaacgaacaaggccttaagaggaa 86196
>gb|AF377837.1| Zea mays subsp. mays isolate NC258 RFLP marker umc230 sequence Length = 660 Score = 46.1 bits (23), Expect = 0.48 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcctta 1658 ||||||||||||||||||||||| Sbjct: 247 gggattaaccgaacaaggcctta 269
>gb|AF377836.1| Zea mays subsp. mays isolate Mo17 RFLP marker umc230 sequence Length = 659 Score = 46.1 bits (23), Expect = 0.48 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcctta 1658 ||||||||||||||||||||||| Sbjct: 247 gggattaaccgaacaaggcctta 269
>gb|AY518220.1| Oryza sativa (indica cultivar-group) NBS-LRR-like protein A (NL-A), NBS-LRR-like protein B (NL-B), NBS-LRR-like protein C (NL-C), and NBS-LRR-like protein D (NL-D) genes, complete cds Length = 73617 Score = 46.1 bits (23), Expect = 0.48 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcctta 1658 ||||||||||||||||||||||| Sbjct: 22499 gggattaaccgaacaaggcctta 22521
>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence Length = 102433 Score = 46.1 bits (23), Expect = 0.48 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1566 agggattaaatcccctacaagtc 1588 ||||||||||||||||||||||| Sbjct: 81941 agggattaaatcccctacaagtc 81963
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 46.1 bits (23), Expect = 0.48 Identities = 35/39 (89%) Strand = Plus / Minus Query: 1591 attccacctcaatcccctgcattcctctctaatcccctc 1629 ||||| |||||||||||| || |||||| |||||||||| Sbjct: 11159569 attcctcctcaatcccctccaatcctctttaatcccctc 11159531 Score = 46.1 bits (23), Expect = 0.48 Identities = 35/39 (89%) Strand = Plus / Minus Query: 1592 ttccacctcaatcccctgcattcctctctaatcccctcc 1630 |||| ||||||||||||||| |||||| |||||||||| Sbjct: 24201474 ttccccctcaatcccctgcaatcctcttcaatcccctcc 24201436 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1635 tgggattaaccgaacaaggcct 1656 |||||||||||||||||||||| Sbjct: 1043287 tgggattaaccgaacaaggcct 1043308 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1635 tgggattaaccgaacaaggcct 1656 |||||||||||||||||||||| Sbjct: 26383731 tgggattaaccgaacaaggcct 26383710 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1638 gattaaccgaacaaggcctta 1658 ||||||||||||||||||||| Sbjct: 24136258 gattaaccgaacaaggcctta 24136278
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 46.1 bits (23), Expect = 0.48 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1638 gattaaccgaacaaggccttaag 1660 ||||||||||||||||||||||| Sbjct: 33257665 gattaaccgaacaaggccttaag 33257687 Score = 44.1 bits (22), Expect = 1.9 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Plus Query: 1621 aatcccctcctcggtgggattaaccgaacaaggcctta 1658 ||||||||||||| ||||| |||||||||||| ||||| Sbjct: 4246172 aatcccctcctcg-tgggaataaccgaacaagacctta 4246208 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 35412141 gggattaaccgaacaaggcct 35412161
>gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0048F08, from chromosome 3, complete sequence Length = 155790 Score = 46.1 bits (23), Expect = 0.48 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1641 taaccgaacaaggccttaagtgg 1663 ||||||||||||||||||||||| Sbjct: 25879 taaccgaacaaggccttaagtgg 25901
>gb|AC106505.4| Rattus norvegicus 1 BAC CH230-206C20 (Children's Hospital Oakland Research Institute) complete sequence Length = 199167 Score = 46.1 bits (23), Expect = 0.48 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1874 tcatgggaggttgtcagcattga 1896 ||||||||||||||||||||||| Sbjct: 46991 tcatgggaggttgtcagcattga 46969
>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06, complete sequence Length = 151506 Score = 46.1 bits (23), Expect = 0.48 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1638 gattaaccgaacaaggccttaag 1660 ||||||||||||||||||||||| Sbjct: 29926 gattaaccgaacaaggccttaag 29948
>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0515G01 Length = 175072 Score = 46.1 bits (23), Expect = 0.48 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1637 ggattaaccgaacaaggccttaa 1659 ||||||||||||||||||||||| Sbjct: 93833 ggattaaccgaacaaggccttaa 93811
>dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0042E12 Length = 164688 Score = 46.1 bits (23), Expect = 0.48 Identities = 35/39 (89%) Strand = Plus / Minus Query: 1591 attccacctcaatcccctgcattcctctctaatcccctc 1629 ||||| |||||||||||| || |||||| |||||||||| Sbjct: 34391 attcctcctcaatcccctccaatcctctttaatcccctc 34353
>dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1217_C01 Length = 100180 Score = 46.1 bits (23), Expect = 0.48 Identities = 35/39 (89%) Strand = Plus / Minus Query: 1591 attccacctcaatcccctgcattcctctctaatcccctc 1629 ||||| |||||||||||| || |||||| |||||||||| Sbjct: 89475 attcctcctcaatcccctccaatcctctttaatcccctc 89437
>dbj|AP004781.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0691E09 Length = 149859 Score = 46.1 bits (23), Expect = 0.48 Identities = 35/39 (89%) Strand = Plus / Minus Query: 1592 ttccacctcaatcccctgcattcctctctaatcccctcc 1630 |||| ||||||||||||||| |||||| |||||||||| Sbjct: 31563 ttccccctcaatcccctgcaatcctcttcaatcccctcc 31525
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12 Length = 163568 Score = 46.1 bits (23), Expect = 0.48 Identities = 35/39 (89%) Strand = Plus / Minus Query: 1592 ttccacctcaatcccctgcattcctctctaatcccctcc 1630 |||| ||||||||||||||| |||||| |||||||||| Sbjct: 134932 ttccccctcaatcccctgcaatcctcttcaatcccctcc 134894 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1638 gattaaccgaacaaggcctta 1658 ||||||||||||||||||||| Sbjct: 69716 gattaaccgaacaaggcctta 69736
>gb|AF466199.1| Sorghum bicolor putative receptor protein kinase, aminoalcoholphosphotransferase, putative growth-regulating factor 1, putative GAG-POL precursor, putative GAG-POL precursor, putative RIRE2 orf3, putative anthocyanin regulatory C1, putative protein T30F21.6, putative copia polyprotein, putative copia polyprotein, putative protein NP_196765.1, and gb protein genes, complete cds; and putative zinc finger protein gene, partial cds Length = 144159 Score = 46.1 bits (23), Expect = 0.48 Identities = 32/35 (91%) Strand = Plus / Plus Query: 1574 aatcccctacaagtcaaattccacctcaatcccct 1608 |||||||||||||||||| | | |||||||||||| Sbjct: 120708 aatcccctacaagtcaaaattcccctcaatcccct 120742
>emb|BX822404.1|CNS0A5X1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB34ZE06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1505 Score = 46.1 bits (23), Expect = 0.48 Identities = 41/47 (87%) Strand = Plus / Plus Query: 995 ttctttggacccaataatgaatatgttttgagtgggtcagactgcgg 1041 ||||||||||| ||| |||||||||| |||||| ||||||||||| Sbjct: 979 ttctttggaccaaatgatgaatatgtcacgagtggttcagactgcgg 1025
>emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02, complete sequence Length = 165745 Score = 46.1 bits (23), Expect = 0.48 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1638 gattaaccgaacaaggccttaag 1660 ||||||||||||||||||||||| Sbjct: 140314 gattaaccgaacaaggccttaag 140336
>ref|XM_001072593.1| PREDICTED: Rattus norvegicus mucin 4 (Muc4), mRNA Length = 8320 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 526 ctgtggagaggatggcttggta 547 |||||||||||||||||||||| Sbjct: 5143 ctgtggagaggatggcttggta 5122
>ref|XM_221384.4| PREDICTED: Rattus norvegicus mucin 4 (Muc4), mRNA Length = 7861 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 526 ctgtggagaggatggcttggta 547 |||||||||||||||||||||| Sbjct: 4684 ctgtggagaggatggcttggta 4663
>gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J17, complete sequence Length = 141598 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1662 ggaagaaaactgtttggtagtg 1683 |||||||||||||||||||||| Sbjct: 50461 ggaagaaaactgtttggtagtg 50440
>gb|AY072300.1| Zea mays cytochrome P450 monooxygenase CYP72A5 gene, complete cds Length = 6588 Score = 44.1 bits (22), Expect = 1.9 Identities = 31/34 (91%) Strand = Plus / Plus Query: 1635 tgggattaaccgaacaaggccttaagtggaagaa 1668 ||||| |||||||||||| ||||||| ||||||| Sbjct: 1796 tgggaataaccgaacaagaccttaagaggaagaa 1829
>gb|AC125375.3| Mus musculus BAC clone RP23-464K21 from chromosome 14, complete sequence Length = 198193 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 413 agggtgggacaaatgaagcagg 434 |||||||||||||||||||||| Sbjct: 99891 agggtgggacaaatgaagcagg 99870
>gb|AC122274.4| Mus musculus BAC clone RP23-228J3 from 14, complete sequence Length = 192135 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 413 agggtgggacaaatgaagcagg 434 |||||||||||||||||||||| Sbjct: 139271 agggtgggacaaatgaagcagg 139292
>ref|NM_080457.1| Mus musculus mucin 4 (Muc4), mRNA gb|AF441786.1| Mus musculus MUC4 (Muc4) mRNA, complete cds Length = 10652 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 526 ctgtggagaggatggcttggta 547 |||||||||||||||||||||| Sbjct: 7636 ctgtggagaggatggcttggta 7615
>gb|AF520422.1|AF520421S2 Mus musculus MUC4 (Muc4) gene, exons 2 through 25 and complete cds Length = 32367 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 526 ctgtggagaggatggcttggta 547 |||||||||||||||||||||| Sbjct: 12550 ctgtggagaggatggcttggta 12529
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1637 ggattaaccgaacaaggcctta 1658 |||||||||||||||||||||| Sbjct: 19201063 ggattaaccgaacaaggcctta 19201084 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggccttaag 1660 |||||||||| |||||||||||||| Sbjct: 2677993 gggattaaccaaacaaggccttaag 2677969
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggccttaagt 1661 |||||||||||||||||| ||||||| Sbjct: 14738710 gggattaaccgaacaaggtcttaagt 14738735 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 11516001 gggattaaccgaacaaggcct 11515981
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 52 caaggcatctggccgccgggcg 73 |||||||||||||||||||||| Sbjct: 4074486 caaggcatctggccgccgggcg 4074465
>emb|AJ865062.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone SQ004T7E11 Length = 134 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1637 ggattaaccgaacaaggcctta 1658 |||||||||||||||||||||| Sbjct: 113 ggattaaccgaacaaggcctta 134
>emb|AJ865020.1| Hordeum vulgare subsp. vulgare transposon MITE Arran, clone SQ004T7D05 Length = 144 Score = 44.1 bits (22), Expect = 1.9 Identities = 49/58 (84%) Strand = Plus / Plus Query: 1568 ggattaaatcccctacaagtcaaattccacctcaatcccctgcattcctctctaatcc 1625 |||||||||||| | |||| |||||||||||||| || || || |||||| |||||| Sbjct: 54 ggattaaatcccttgtaagtgaaattccacctcaagccgctccaatcctctttaatcc 111
>dbj|AP003564.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0062J13 Length = 152837 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1635 tgggattaaccgaacaaggcct 1656 |||||||||||||||||||||| Sbjct: 106160 tgggattaaccgaacaaggcct 106181
>dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0660D08 Length = 146915 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1635 tgggattaaccgaacaaggcct 1656 |||||||||||||||||||||| Sbjct: 19510 tgggattaaccgaacaaggcct 19531
>dbj|AP003565.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0085J13 Length = 130185 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1635 tgggattaaccgaacaaggcct 1656 |||||||||||||||||||||| Sbjct: 81458 tgggattaaccgaacaaggcct 81437
>dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0016A21 Length = 144076 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggcctt 1657 |||||||||||||||||||||| Sbjct: 72832 gggattaaccgaacaaggcctt 72811
>dbj|AP005809.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0039M16 Length = 133229 Score = 44.1 bits (22), Expect = 1.9 Identities = 28/30 (93%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggccttaagtggaa 1665 ||||||||| ||||||||||||||| |||| Sbjct: 91218 gggattaacagaacaaggccttaagaggaa 91189
>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0707C02 Length = 163609 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggccttaagt 1661 |||||||||||||||||| ||||||| Sbjct: 24099 gggattaaccgaacaaggtcttaagt 24124
>dbj|AP005388.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04 Length = 163579 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1637 ggattaaccgaacaaggcctta 1658 |||||||||||||||||||||| Sbjct: 123428 ggattaaccgaacaaggcctta 123449
>dbj|AP005807.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0018H10 Length = 135879 Score = 44.1 bits (22), Expect = 1.9 Identities = 28/30 (93%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggccttaagtggaa 1665 ||||||||| ||||||||||||||| |||| Sbjct: 128445 gggattaacagaacaaggccttaagaggaa 128416
>gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1), unknown (Z438D03.5), epsilon-COP (Z438D03.6), putative kinase (Z438D03.7), unknown (Z438D03.25), and C1-B73 (Z438D03.27) genes, complete cds Length = 185988 Score = 44.1 bits (22), Expect = 1.9 Identities = 49/58 (84%) Strand = Plus / Minus Query: 1568 ggattaaatcccctacaagtcaaattccacctcaatcccctgcattcctctctaatcc 1625 ||||| ||| |||||||||||||| ||| ||||| ||||| || ||||||| ||||| Sbjct: 32974 ggattcaattccctacaagtcaaaatcctcctcagcccccttcaatcctctccaatcc 32917
>emb|AL773505.5| Mouse DNA sequence from clone RP23-209M19 on chromosome 2, complete sequence Length = 190991 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 9 ctctctattctcccaccccacc 30 |||||||||||||||||||||| Sbjct: 152337 ctctctattctcccaccccacc 152316
>gb|AF218265.1|AF218265 Mus musculus mucin Muc4 mRNA, partial cds Length = 4593 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 526 ctgtggagaggatggcttggta 547 |||||||||||||||||||||| Sbjct: 1411 ctgtggagaggatggcttggta 1390
>gb|AY109413.1| Zea mays CL2362_1 mRNA sequence Length = 1714 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1635 tgggattaaccgaacaaggccttaag 1660 ||||| |||||||||||||||||||| Sbjct: 1674 tgggaataaccgaacaaggccttaag 1699
>emb|AL606654.3|OSJN00100 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18, complete sequence Length = 132854 Score = 44.1 bits (22), Expect = 1.9 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Plus Query: 1621 aatcccctcctcggtgggattaaccgaacaaggcctta 1658 ||||||||||||| ||||| |||||||||||| ||||| Sbjct: 89236 aatcccctcctcg-tgggaataaccgaacaagacctta 89272
>gb|AC139244.4| Mus musculus BAC clone RP23-324J8 from 16, complete sequence Length = 209201 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 526 ctgtggagaggatggcttggta 547 |||||||||||||||||||||| Sbjct: 54583 ctgtggagaggatggcttggta 54562
>gb|U06752.1|RNMUCASGP7 Rattus norvegicus Fisher 344 pre-sialomucin complex (pSMC) mRNA, repeat sequences 10-14, partial cds Length = 5795 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 526 ctgtggagaggatggcttggta 547 |||||||||||||||||||||| Sbjct: 2620 ctgtggagaggatggcttggta 2599
>gb|J05212.1|MZEKD18 Maize oleosin KD18 (KD18; L2) gene, complete cds Length = 3101 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1635 tgggattaaccgaacaaggccttaag 1660 ||||| |||||||||||||||||||| Sbjct: 3061 tgggaataaccgaacaaggccttaag 3086
>ref|XM_001017784.1| Tetrahymena thermophila SB210 Protein kinase domain containing protein (TTHERM_00438870) mRNA, complete cds Length = 2511 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 595 ctattcattctcaaatagaag 615 ||||||||||||||||||||| Sbjct: 1753 ctattcattctcaaatagaag 1773
>gb|DQ493646.1| Zea mays cultivar CML258 bz locus region Length = 66062 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 8056 gggattaaccgaacaaggcct 8076
>gb|AC135956.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005H20, complete sequence Length = 135560 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 15135 gggattaaccgaacaaggcct 15155
>gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1579_G03, complete sequence Length = 121466 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 45706 gggattaaccgaacaaggcct 45686 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 45770 gggattaaccgaacaaggcct 45790
>gb|AC150202.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1024A10, complete sequence Length = 157609 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 11597 gggattaaccgaacaaggcct 11577
>gb|AC114896.5| Oryza sativa chromosome 3 BAC OSJNBa0091B22 genomic sequence, complete sequence Length = 115815 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 47322 gggattaaccgaacaaggcct 47342
>gb|AC124749.5| Mus musculus BAC clone RP23-262G23 from chromosome 5, complete sequence Length = 209986 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 232 tcctgctggtgacctccttgtgtct 256 |||||||||||||||||||| |||| Sbjct: 63286 tcctgctggtgacctccttgggtct 63262
>gb|AC008267.6| Homo sapiens BAC clone GS1-124K5 from 7, complete sequence Length = 196954 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1666 gaaaactgtttggtagtgtgt 1686 ||||||||||||||||||||| Sbjct: 43093 gaaaactgtttggtagtgtgt 43113
>gb|AC140411.3| Mus musculus BAC clone RP24-93J6 from chromosome 19, complete sequence Length = 163978 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 297 ctaaaactaaaaaactaacttaccc 321 |||||||||||||| |||||||||| Sbjct: 130398 ctaaaactaaaaaaataacttaccc 130374
>gb|AC122906.4| Mus musculus BAC clone RP23-47D11 from 10, complete sequence Length = 191190 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1387 tggtgatgagactttcttcat 1407 ||||||||||||||||||||| Sbjct: 106800 tggtgatgagactttcttcat 106780
>gb|AC122226.3| Mus musculus BAC clone RP23-131F7 from 5, complete sequence Length = 193861 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 232 tcctgctggtgacctccttgtgtct 256 |||||||||||||||||||| |||| Sbjct: 180692 tcctgctggtgacctccttgggtct 180668
>ref|XM_858602.1| PREDICTED: Canis familiaris similar to ATP-binding cassette, sub-family C, member 11 isoform a, transcript variant 2 (LOC478138), mRNA Length = 4412 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 514 catactttacagctgtggagaggat 538 ||||||| ||||||||||||||||| Sbjct: 3311 catacttcacagctgtggagaggat 3335
>ref|XM_535314.2| PREDICTED: Canis familiaris similar to ATP-binding cassette, sub-family C, member 11 isoform a, transcript variant 1 (LOC478138), mRNA Length = 4529 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 514 catactttacagctgtggagaggat 538 ||||||| ||||||||||||||||| Sbjct: 3311 catacttcacagctgtggagaggat 3335
>gb|AY883527.1| Zea mays subsp. parviglumis cultivar CIMMYT-8783 teosinte glume architecture 1 (tga1) gene, exon 2 and partial cds Length = 619 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 484 gggattaaccgaacaaggcct 504
>gb|AC027588.11| Homo sapiens chromosome 18, clone RP11-257E18, complete sequence Length = 180480 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1045 tgtgttcatttggaggaaaaa 1065 ||||||||||||||||||||| Sbjct: 97932 tgtgttcatttggaggaaaaa 97952
>emb|CR405685.8| Zebrafish DNA sequence from clone DKEY-164B12 in linkage group 25, complete sequence Length = 116349 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 taaaactaaaaaactaactta 318 ||||||||||||||||||||| Sbjct: 25591 taaaactaaaaaactaactta 25611
>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence Length = 147117 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggccttaag 1660 |||||||| |||||||||||||||| Sbjct: 82273 gggattaaacgaacaaggccttaag 82297
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggccttaag 1660 |||||||| |||||||||||||||| Sbjct: 21407260 gggattaaacgaacaaggccttaag 21407284
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1646 gaacaaggccttaagtggaag 1666 ||||||||||||||||||||| Sbjct: 3008033 gaacaaggccttaagtggaag 3008013 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 3875289 gggattaaccgaacaaggcct 3875269 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 11769872 gggattaaccgaacaaggcct 11769852
>emb|CR450821.7| Zebrafish DNA sequence from clone CH211-156B7 in linkage group 3, complete sequence Length = 163751 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 709 ttttaggaaaataaacttgga 729 ||||||||||||||||||||| Sbjct: 26286 ttttaggaaaataaacttgga 26266
>gb|AC021373.7| Homo sapiens, clone RP11-25L6, complete sequence Length = 119794 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1045 tgtgttcatttggaggaaaaa 1065 ||||||||||||||||||||| Sbjct: 47915 tgtgttcatttggaggaaaaa 47935
>emb|AL445532.8| Human DNA sequence from clone RP11-263K15 on chromosome 9 Contains the 3' end of the NTRK2 gene for Neurotrophic tyrosine kinase, receptor, type 2 (TRKB), complete sequence Length = 171629 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1494 caacttcacattcagtgatat 1514 ||||||||||||||||||||| Sbjct: 166759 caacttcacattcagtgatat 166739
>emb|AL359738.7| Human DNA sequence from clone RP11-249D14 on chromosome 1 Contains part of a gene for a novel protein and 3' end of a novel gene, complete sequence Length = 77555 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1539 aattggaggggtttggaaggg 1559 ||||||||||||||||||||| Sbjct: 46909 aattggaggggtttggaaggg 46929
>dbj|AP003330.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F01 Length = 163671 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 78814 gggattaaccgaacaaggcct 78794
>emb|CR380949.1| Candida glabrata strain CBS138 chromosome C complete sequence Length = 558804 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 915 agccagagcatttggacaagc 935 ||||||||||||||||||||| Sbjct: 466305 agccagagcatttggacaagc 466285
>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19, complete sequence Length = 123272 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 36944 gggattaaccgaacaaggcct 36964
>gb|S48688.1| Zea mays transposon Tourist-Zm1 Wx gene, wx-B2 allele, partial sequence Length = 150 Score = 42.1 bits (21), Expect = 7.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 1545 aggggtttggaagggattgggagggattaaatcccct 1581 ||||||||| ||||||||| ||||||||||||||| Sbjct: 120 aggggtttgagagggattggaggggattaaatcccct 84
>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0692C11 Length = 169562 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 139298 gggattaaccgaacaaggcct 139318
>dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0510F09 Length = 138277 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 55497 gggattaaccgaacaaggcct 55517
>gb|AC141636.4| Mus musculus BAC clone RP23-471D17 from chromosome 19, complete sequence Length = 165424 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 297 ctaaaactaaaaaactaacttaccc 321 |||||||||||||| |||||||||| Sbjct: 3862 ctaaaactaaaaaaataacttaccc 3838
>dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1046_F10 Length = 118472 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 35862 gggattaaccgaacaaggcct 35882
>dbj|AP005836.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0013F08 Length = 166989 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 32008 gggattaaccgaacaaggcct 31988
>gb|AC120983.6| Oryza sativa chromosome 3 BAC OSJNBb0011H13 genomic sequence, complete sequence Length = 132782 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1638 gattaaccgaacaaggcctta 1658 ||||||||||||||||||||| Sbjct: 12713 gattaaccgaacaaggcctta 12693
>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1174_D05 Length = 128525 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1642 aaccgaacaaggccttaagtg 1662 ||||||||||||||||||||| Sbjct: 118317 aaccgaacaaggccttaagtg 118297
>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0666G04 Length = 141983 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1642 aaccgaacaaggccttaagtg 1662 ||||||||||||||||||||| Sbjct: 60120 aaccgaacaaggccttaagtg 60100
>dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672D08 Length = 173729 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1641 taaccgaacaaggccttaagtggaa 1665 ||||||||||||||||||| ||||| Sbjct: 172272 taaccgaacaaggccttaattggaa 172248 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1511 atatttaggccttgttcggtt 1531 ||||||||||||||||||||| Sbjct: 172557 atatttaggccttgttcggtt 172537
>dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0436E04 Length = 144644 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1641 taaccgaacaaggccttaagtggaa 1665 ||||||||||||||||||| ||||| Sbjct: 16140 taaccgaacaaggccttaattggaa 16116 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1511 atatttaggccttgttcggtt 1531 ||||||||||||||||||||| Sbjct: 16425 atatttaggccttgttcggtt 16405
>dbj|AP005896.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0032C09 Length = 127263 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1646 gaacaaggccttaagtggaag 1666 ||||||||||||||||||||| Sbjct: 54144 gaacaaggccttaagtggaag 54124
>dbj|AP007224.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0463E12 Length = 161081 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1646 gaacaaggccttaagtggaag 1666 ||||||||||||||||||||| Sbjct: 133672 gaacaaggccttaagtggaag 133652
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0429G06 Length = 158321 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1638 gattaaccgaacaaggcctta 1658 ||||||||||||||||||||| Sbjct: 145951 gattaaccgaacaaggcctta 145971
>dbj|AP005741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470H09 Length = 141257 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggccttaag 1660 |||||||||| |||||||||||||| Sbjct: 56274 gggattaaccaaacaaggccttaag 56250
>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_F08 Length = 134988 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggccttaag 1660 ||||||||||||||| ||||||||| Sbjct: 103226 gggattaaccgaacatggccttaag 103250
>dbj|AP006268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0037D09 Length = 140470 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 103713 gggattaaccgaacaaggcct 103733
>dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1506_G02 Length = 106742 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 96992 gggattaaccgaacaaggcct 97012
>dbj|AP005257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0417F02 Length = 150660 Score = 42.1 bits (21), Expect = 7.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1637 ggattaaccgaacaaggccttaagtggaa 1665 |||||||||||| ||||||| |||||||| Sbjct: 118413 ggattaaccgaataaggcctaaagtggaa 118441
>dbj|AP003817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1167_G06 Length = 112386 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 3919 gggattaaccgaacaaggcct 3939
>dbj|AP004343.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0618H09 Length = 142306 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 95502 gggattaaccgaacaaggcct 95522
>dbj|AP003849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1753_E03 Length = 126734 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggccttaag 1660 ||||||||||||||| ||||||||| Sbjct: 3946 gggattaaccgaacatggccttaag 3970
>dbj|AP004113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1116_A06 Length = 176062 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 131621 gggattaaccgaacaaggcct 131601
>dbj|AP004836.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0030G02 Length = 187265 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 73760 gggattaaccgaacaaggcct 73740
>dbj|AP005310.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0477B05 Length = 142166 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 77762 gggattaaccgaacaaggcct 77742
>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0519E02 Length = 139321 Score = 42.1 bits (21), Expect = 7.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1637 ggattaaccgaacaaggccttaagtggaa 1665 |||||||||||| ||||||| |||||||| Sbjct: 18030 ggattaaccgaataaggcctaaagtggaa 18058 Score = 42.1 bits (21), Expect = 7.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1637 ggattaaccgaacaaggccttaagtggaa 1665 |||||||||||| ||||||| |||||||| Sbjct: 99328 ggattaaccgaataaggcctaaagtggaa 99300
>ref|XM_445390.1| Candida glabrata CBS138, CAGL0C04983g partial mRNA Length = 1017 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 915 agccagagcatttggacaagc 935 ||||||||||||||||||||| Sbjct: 428 agccagagcatttggacaagc 448
>gb|AF153448.1|AF153448 Zea mays nitrate reductase (NR1) gene, complete cds Length = 8043 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1636 gggattaaccgaacaaggcct 1656 ||||||||||||||||||||| Sbjct: 2607 gggattaaccgaacaaggcct 2627
>gb|AC147615.3| Mus musculus BAC clone RP23-408N24 from 10, complete sequence Length = 205962 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1387 tggtgatgagactttcttcat 1407 ||||||||||||||||||||| Sbjct: 83039 tggtgatgagactttcttcat 83019
>emb|AL772338.9| Mouse DNA sequence from clone RP23-47A6 on chromosome 4, complete sequence Length = 235366 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 888 gtcttggtccaaatcctgaat 908 ||||||||||||||||||||| Sbjct: 7811 gtcttggtccaaatcctgaat 7831
>emb|AL732405.8| Mouse DNA sequence from clone RP23-149P4 on chromosome X, complete sequence Length = 193425 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1546 ggggtttggaagggattggga 1566 ||||||||||||||||||||| Sbjct: 24145 ggggtttggaagggattggga 24165
>dbj|AP002969.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0455C04 Length = 147940 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1641 taaccgaacaaggccttaagtggaa 1665 ||||||||||||||||||| ||||| Sbjct: 123016 taaccgaacaaggccttaattggaa 122992 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1511 atatttaggccttgttcggtt 1531 ||||||||||||||||||||| Sbjct: 123301 atatttaggccttgttcggtt 123281 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 362,009,327 Number of extensions: 19171319 Number of successful extensions: 367077 Number of sequences better than 10.0: 142 Number of HSP's gapped: 367051 Number of HSP's successfully gapped: 213 Length of query: 1963 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1940 Effective length of database: 18,503,978,556 Effective search space: 35897718398640 Effective search space used: 35897718398640 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
