ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf76m10 |
|---|---|
| Clone Library Name | barley_pub |
>O93209:POL_FFV Pro-Pol polyprotein - Feline foamy virus (FFV) (Feline syncytial| virus) Length = 1156 Score = 125 bits (315), Expect = 7e-28 Identities = 70/233 (30%), Positives = 110/233 (47%) Frame = +1 Query: 436 EAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMNYSLVI 615 EA+ HAG +Q ++WP + KD F+ +C+ C+ + + + P Sbjct: 812 EAHNISHAGREAVLLKIQENYWWPKMKKDISSFLSTCNVCKMVNPLNLKPISPQAIVHPT 871 Query: 616 KPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFG 795 KPFD DY+GP P S GY HVLV VD T + PTK +IK+L Sbjct: 872 KPFDKFYMDYIGPLPPSEGYVHVLVVVDAATGFTWLYPTKAQTSKATIKVLN--HLTGLA 929 Query: 796 VPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVNR 975 +P+ L +D GS F F + + ++ ++PYHPQSSG+VE N EIK +L K++ Sbjct: 930 IPKVLHSDQGSAFTSEEFAQWAKERNIQLEFSTPYHPQSSGKVERKNSEIKKLLTKLLVG 989 Query: 976 SRKNWSSKLDDALWAYGTAYKNPMGMSPYKMVYGKACYFPLELEHKAYWAIKE 1134 W + + A + +P+++++G C P + W +E Sbjct: 990 RPLKWYNLISSVQLALNNTHVVSTKYTPHQLMFGIDCNLPFANKDTLDWTREE 1042
>P27401:POL_SFV3L Pro-Pol polyprotein - Simian foamy virus type 3 (strain LK3) (SFVagm)| (SFV-3) Length = 1143 Score = 120 bits (302), Expect = 2e-26 Identities = 67/222 (30%), Positives = 105/222 (47%) Frame = +1 Query: 412 TDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEM 591 +D ++ +A+ H G + + S ++WP L KD K + C +C T Sbjct: 802 SDRPQIILQAHNIAHTGRDSTFLKVSSKYWWPNLRKDVVKVIRQCKQCLVTNAATLAAPP 861 Query: 592 PMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK 771 + +KPFD DY+GP P SNGY HVLV VD +T +V PTK ++K L Sbjct: 862 ILRPERPVKPFDKFFIDYIGPLPPSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKALN 921 Query: 772 *VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKL 951 + VP+ + +D G+ F F + ++PYHPQSSG+VE N +IK Sbjct: 922 --MLTSIAVPKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKR 979 Query: 952 ILQKIVNRSRKNWSSKLDDALWAYGTAYKNPMGMSPYKMVYG 1077 +L K++ W L A +Y +P+++++G Sbjct: 980 LLTKLLVGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFG 1021
>P23074:POL_SFV1 Pro-Pol polyprotein - Simian foamy virus type 1 (SFVmac) (SFV-1)| Length = 1149 Score = 117 bits (294), Expect = 2e-25 Identities = 69/222 (31%), Positives = 107/222 (48%), Gaps = 1/222 (0%) Frame = +1 Query: 415 DPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMP 594 D ++ A+ H G + S ++WP L KD K + C +C + N T P Sbjct: 803 DREKIISTAHNIAHTGRDATFLKVSSKYWWPNLRKDVVKSIRQCKQCL-VTNATNLTSPP 861 Query: 595 MNYSLV-IKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK 771 + + +KPFD DY+GP P SNGY HVLV VD +T +V PTK ++K L Sbjct: 862 ILRPVKPLKPFDKFYIDYIGPLPPSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKALN 921 Query: 772 *VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKL 951 + +P+ L +D G+ F F + + ++PYHPQSSG+VE N +IK Sbjct: 922 --MLTSIAIPKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKR 979 Query: 952 ILQKIVNRSRKNWSSKLDDALWAYGTAYKNPMGMSPYKMVYG 1077 +L K++ W L A +Y +P+++++G Sbjct: 980 LLTKLLIGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFG 1021
>P10394:POL4_DROME Retrovirus-related Pol polyprotein from transposon 412 [Includes:| Protease - Drosophila melanogaster (Fruit fly) Length = 1237 Score = 107 bits (266), Expect = 3e-22 Identities = 84/344 (24%), Positives = 158/344 (45%), Gaps = 2/344 (0%) Frame = +1 Query: 445 GGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMNYSLVIK-P 621 GG+ +T KV + +YW + K +++V C +CQ+ TK + PM + + Sbjct: 907 GGHTGITKTLAKVKRH-YYWKNMSKYIKEYVRKCQKCQK-AKTTKHTKTPMTITETPEHA 964 Query: 622 FDVSGFDYMGPFPSS-NGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGV 798 FD D +GP P S NG + + + +TK++ AIP N T K + ++G Sbjct: 965 FDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANKSAKTVAKAIFESFILKYGP 1024 Query: 799 PRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVNRS 978 + +TD G+ + + + + + + ++ +H Q+ G VE S+R + ++ ++ Sbjct: 1025 MKTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHRTLNEYIRSYISTD 1084 Query: 979 RKNWSSKLDDALWAYGTAYKNPMGMSPYKMVYGKACYFPLELEHKAYWAIKELNFDFKLA 1158 + +W L ++ + T PY++V+G+ P +K + N D Sbjct: 1085 KTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHF-NKLHSIEPIYNIDDYAK 1143 Query: 1159 GEKWLFDISSLDEWRTQAYENAKLFKEKVKRWHDKRIQKREFNVGDYVLLYNSRLRFFAG 1338 K+ +++ +A + + KEK K +D +++ E VGD VLL N Sbjct: 1144 ESKYRLEVA-----YARARKLLEAHKEKNKENYDLKVKDIELEVGDKVLLRNE----VGH 1194 Query: 1339 RLLSKWEGPYVIEEVYRSGAIKINNTEGNFPRVVNGQRIKHYIS 1470 +L K+ GPY IE + + I + T N ++V+ R+K + S Sbjct: 1195 KLDFKYTGPYKIESIGDNNNITL-LTNKNKKQIVHKDRLKKFHS 1237
>P14350:POL_FOAMV Pro-Pol polyprotein - Human spumaretrovirus (SFVcpz(hu)) (Human foamy| virus) Length = 1143 Score = 105 bits (261), Expect = 1e-21 Identities = 59/222 (26%), Positives = 102/222 (45%) Frame = +1 Query: 412 TDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEM 591 +D ++ +A+ H G + + ++WP + KD K + C +C K Sbjct: 803 SDRQKIVLQAHNLAHTGREATLLKIANLYWWPNMRKDVVKQLGRCQQCLITNASNKASGP 862 Query: 592 PMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK 771 + KPFD DY+GP P S GY +VLV VD +T + PTK ++K L Sbjct: 863 ILRPDRPQKPFDKFFIDYIGPLPPSQGYLYVLVVVDGMTGFTWLYPTKAPSTSATVKSLN 922 Query: 772 *VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKL 951 + +P+ + +D G+ F F + + ++ ++PYHPQS +VE N +IK Sbjct: 923 --VLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKR 980 Query: 952 ILQKIVNRSRKNWSSKLDDALWAYGTAYKNPMGMSPYKMVYG 1077 +L K++ W L A Y + +P+++++G Sbjct: 981 LLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQLLFG 1022
>Q9TTC1:POL_KORV Pro-Pol polyprotein - Koala retrovirus (KoRV)| Length = 1127 Score = 96.7 bits (239), Expect = 4e-19 Identities = 92/310 (29%), Positives = 141/310 (45%), Gaps = 3/310 (0%) Frame = +1 Query: 454 HAG-DRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDV 630 H G D+ V ++ F+ P L R+ C C +T +E P +P Sbjct: 783 HLGPDKLLQLVGRTSFHIPNLQSVVREITSKCQVCAVTNAVTTYRE-PGRRQRGDRPGVY 841 Query: 631 SGFDYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYL 810 D+ P G ++LV +D + WVEA PTK T K + I PRFG+P+ L Sbjct: 842 WEVDFTEVKPGRYGNRYLLVFIDTFSGWVEAFPTKTETALTVCKKILEEILPRFGIPKVL 901 Query: 811 MTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI-VNRSRKN 987 +D+G F+ V + + + ++ ++ Y PQSSGQVE NR IK L K+ + K+ Sbjct: 902 GSDNGPAFVAQVSQGLATQLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKD 961 Query: 988 WSSKLDDALWAYGTAYKNPMGMSPYKMVYGKACYFPLELEHKAYWAIKELNFDFKLAGEK 1167 W + L AL G++PY++++G P L A + N DF Sbjct: 962 WVTLLPLALLRARNT-PGQFGLTPYEILHGGP---PPVL---ASGEVVGSNGDFFPV--- 1011 Query: 1168 WLF-DISSLDEWRTQAYENAKLFKEKVKRWHDKRIQKREFNVGDYVLLYNSRLRFFAGRL 1344 LF + +L+ RTQ ++ K + R I F VGD VL+ R +G L Sbjct: 1012 -LFTHLKALEVVRTQIWDQIK----EAYRPGTVAI-PHPFQVGDRVLVRRHR----SGSL 1061 Query: 1345 LSKWEGPYVI 1374 +W+GPY++ Sbjct: 1062 EPRWKGPYLV 1071
>P26808:POL_MLVFP Pol polyprotein [Contains: Protease - Friend murine leukemia virus| (isolate PVC-211) (FrMLV) Length = 1204 Score = 95.1 bits (235), Expect = 1e-18 Identities = 74/246 (30%), Positives = 116/246 (47%), Gaps = 1/246 (0%) Frame = +1 Query: 640 DYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTD 819 D+ P GY ++LV VD + WVEA PTK K L IFPRFG+P+ L TD Sbjct: 921 DFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTD 980 Query: 820 DGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI-VNRSRKNWSS 996 +G F+ V + + V+ ++ Y PQSSGQVE NR IK L K+ + ++W Sbjct: 981 NGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVL 1040 Query: 997 KLDDALWAYGTAYKNPMGMSPYKMVYGKACYFPLELEHKAYWAIKELNFDFKLAGEKWLF 1176 L AL+ P G++PY+++YG P L + + ++ + L Sbjct: 1041 LLPLALYRARNT-PGPHGLTPYEILYGA----PPPLVNFPDPDMAKVTHNPSLQAHLQAL 1095 Query: 1177 DISSLDEWRTQAYENAKLFKEKVKRWHDKRIQKREFNVGDYVLLYNSRLRFFAGRLLSKW 1356 + + WR A ++E++ D+ + F VGD V + + + L +W Sbjct: 1096 YLVQHEVWRPL----AAAYQEQL----DRPVVPHPFRVGDTVWVRRHQTK----NLEPRW 1143 Query: 1357 EGPYVI 1374 +GPY + Sbjct: 1144 KGPYTV 1149
>P26810:POL_MLVF5 Pol polyprotein [Contains: Protease - Friend murine leukemia virus| (isolate 57) (FrMLV) Length = 1204 Score = 95.1 bits (235), Expect = 1e-18 Identities = 74/246 (30%), Positives = 116/246 (47%), Gaps = 1/246 (0%) Frame = +1 Query: 640 DYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTD 819 D+ P GY ++LV VD + WVEA PTK K L IFPRFG+P+ L TD Sbjct: 921 DFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTD 980 Query: 820 DGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI-VNRSRKNWSS 996 +G F+ V + + V+ ++ Y PQSSGQVE NR IK L K+ + ++W Sbjct: 981 NGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVL 1040 Query: 997 KLDDALWAYGTAYKNPMGMSPYKMVYGKACYFPLELEHKAYWAIKELNFDFKLAGEKWLF 1176 L AL+ P G++PY+++YG P L + + ++ + L Sbjct: 1041 LLPLALYRARNT-PGPHGLTPYEILYGA----PPPLVNFPDPDMAKVTHNPSLQAHLQAL 1095 Query: 1177 DISSLDEWRTQAYENAKLFKEKVKRWHDKRIQKREFNVGDYVLLYNSRLRFFAGRLLSKW 1356 + + WR A ++E++ D+ + F VGD V + + + L +W Sbjct: 1096 YLVQHEVWRPL----AAAYQEQL----DRPVVPHPFRVGDTVWVRRHQTK----NLEPRW 1143 Query: 1357 EGPYVI 1374 +GPY + Sbjct: 1144 KGPYTV 1149
>P03360:POL_AVIRE Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -| Avian reticuloendotheliosis virus Length = 473 Score = 95.1 bits (235), Expect = 1e-18 Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 1/209 (0%) Frame = +1 Query: 454 HAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMNYSLV-IKPFDV 630 H G+ ++++ + +++ AR C C ++ E +N + P + Sbjct: 132 HLGESKLTELVRKHYPICGIYRAARDITTRCVACAQVNPRAAPVEKGLNSRIRGAAPGEH 191 Query: 631 SGFDYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYL 810 D+ + GY ++LV VD + WVEA P K IK L I PRFG+P + Sbjct: 192 WEVDFTEMITAKGGYKYLLVLVDTFSGWVEAYPAKRETSQVVIKHLILDIIPRFGLPVQI 251 Query: 811 MTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVNRSRKNW 990 +D+G F+ V +++ +V+ ++ Y PQSSGQVE NR +K + K+ +R R+ Sbjct: 252 GSDNGPAFVAKVTQQLCEALNVSWKLHCAYRPQSSGQVERMNRTLKKAIAKLEDRDRRGL 311 Query: 991 SSKLDDALWAYGTAYKNPMGMSPYKMVYG 1077 +A GT Y G+SP++++YG Sbjct: 312 GLPPPSG-FAPGTVYPGREGLSPFEILYG 339
>P26809:POL_MLVFF Pol polyprotein [Contains: Protease - Friend murine leukemia virus| (isolate FB29) (FrMLV) Length = 1204 Score = 94.7 bits (234), Expect = 2e-18 Identities = 73/246 (29%), Positives = 116/246 (47%), Gaps = 1/246 (0%) Frame = +1 Query: 640 DYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTD 819 D+ P GY ++LV +D + WVEA PTK K L IFPRFG+P+ L TD Sbjct: 921 DFTEVKPGLYGYKYLLVFIDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTD 980 Query: 820 DGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI-VNRSRKNWSS 996 +G F+ V + + V+ ++ Y PQSSGQVE NR IK L K+ + ++W Sbjct: 981 NGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVL 1040 Query: 997 KLDDALWAYGTAYKNPMGMSPYKMVYGKACYFPLELEHKAYWAIKELNFDFKLAGEKWLF 1176 L AL+ P G++PY+++YG P L + + ++ + L Sbjct: 1041 LLPLALYRARNT-PGPHGLTPYEILYGA----PPPLVNFPDPDMAKVTHNPSLQAHLQAL 1095 Query: 1177 DISSLDEWRTQAYENAKLFKEKVKRWHDKRIQKREFNVGDYVLLYNSRLRFFAGRLLSKW 1356 + + WR A ++E++ D+ + F VGD V + + + L +W Sbjct: 1096 YLVQHEVWRPL----AAAYQEQL----DRPVVPHPFRVGDTVWVRRHQTK----NLEPRW 1143 Query: 1357 EGPYVI 1374 +GPY + Sbjct: 1144 KGPYTV 1149
>P31792:POL_FENV1 Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -| Feline endogenous virus ECE1 Length = 1046 Score = 92.0 bits (227), Expect = 1e-17 Identities = 54/147 (36%), Positives = 79/147 (53%), Gaps = 1/147 (0%) Frame = +1 Query: 640 DYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTD 819 D+ P GY ++LV VD + WVEA PT+ H K + IFPRFG+P+ + +D Sbjct: 768 DFTEVKPHYAGYKYLLVFVDTFSGWVEAYPTRQETAHMVAKKILEEIFPRFGLPKVIGSD 827 Query: 820 DGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI-VNRSRKNWSS 996 +G F+ V + + +N ++ Y PQSSGQVE NR IK L K+ + K+W Sbjct: 828 NGPAFVSQVSQGLARTLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRR 887 Query: 997 KLDDALWAYGTAYKNPMGMSPYKMVYG 1077 L AL N G++PY+++YG Sbjct: 888 LLSLALLRARNT-PNRFGLTPYEILYG 913
>P31795:POL_MLVRK Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -| Radiation murine leukemia virus (strain Kaplan) Length = 581 Score = 91.7 bits (226), Expect = 1e-17 Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 1/246 (0%) Frame = +1 Query: 640 DYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTD 819 D+ P GY ++LV VD + WVEA PTK+ K L IFPRFG+P+ L TD Sbjct: 301 DFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTD 360 Query: 820 DGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI-VNRSRKNWSS 996 +G F+ V + + ++ ++ Y PQSSGQVE NR IK L K+ + ++W Sbjct: 361 NGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVL 420 Query: 997 KLDDALWAYGTAYKNPMGMSPYKMVYGKACYFPLELEHKAYWAIKELNFDFKLAGEKWLF 1176 L AL+ P G++PY+++YG P L + + + L Sbjct: 421 LLPLALYRARNT-PGPHGLTPYEILYGA----PPPLVNFHDPEMSKFTNSPSLQAHLQAL 475 Query: 1177 DISSLDEWRTQAYENAKLFKEKVKRWHDKRIQKREFNVGDYVLLYNSRLRFFAGRLLSKW 1356 + W+ A +++++ D+ + F VGD V + + + L +W Sbjct: 476 QAVQREVWKPL----AAAYQDQL----DQPVIPHPFRVGDTVWVRRHQTK----NLEPRW 523 Query: 1357 EGPYVI 1374 +GPY + Sbjct: 524 KGPYTV 529
>P11227:POL_MLVRD Pol polyprotein [Contains: Protease - Radiation murine leukemia virus| Length = 1196 Score = 91.7 bits (226), Expect = 1e-17 Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 1/246 (0%) Frame = +1 Query: 640 DYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTD 819 D+ P GY ++LV VD + WVEA PTK+ K L IFPRFG+P+ L TD Sbjct: 916 DFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTD 975 Query: 820 DGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI-VNRSRKNWSS 996 +G F+ V + + ++ ++ Y PQSSGQVE NR IK L K+ + ++W Sbjct: 976 NGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVL 1035 Query: 997 KLDDALWAYGTAYKNPMGMSPYKMVYGKACYFPLELEHKAYWAIKELNFDFKLAGEKWLF 1176 L AL+ P G++PY+++YG P L + + + L Sbjct: 1036 LLPLALYRARNT-PGPHGLTPYEILYGA----PPPLVNFHDPEMSKFTNSPSLQAHLQAL 1090 Query: 1177 DISSLDEWRTQAYENAKLFKEKVKRWHDKRIQKREFNVGDYVLLYNSRLRFFAGRLLSKW 1356 + W+ A +++++ D+ + F VGD V + + + L +W Sbjct: 1091 QAVQREVWKPL----AAAYQDQL----DQPVIPHPFRVGDTVWVRRHQTK----NLEPRW 1138 Query: 1357 EGPYVI 1374 +GPY + Sbjct: 1139 KGPYTV 1144
>P10272:POL_BAEVM Pol polyprotein [Contains: Protease - Baboon endogenous virus (strain| M7) Length = 1189 Score = 91.7 bits (226), Expect = 1e-17 Identities = 54/147 (36%), Positives = 79/147 (53%), Gaps = 1/147 (0%) Frame = +1 Query: 640 DYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTD 819 D+ P GY ++LV VD + WVEA PT+ H K + IFPRFG+P+ + +D Sbjct: 911 DFTEVKPHYAGYKYLLVFVDTFSGWVEAFPTRQETAHIVAKKILEEIFPRFGLPKVIGSD 970 Query: 820 DGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI-VNRSRKNWSS 996 +G F+ V + + +N ++ Y PQSSGQVE NR IK L K+ + K+W Sbjct: 971 NGPAFVSQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRR 1030 Query: 997 KLDDALWAYGTAYKNPMGMSPYKMVYG 1077 L AL N G++PY+++YG Sbjct: 1031 LLSLALLRARNT-PNRFGLTPYEILYG 1056
>P08361:POL_MLVCB Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -| Cas-Br-E murine leukemia virus Length = 282 Score = 91.3 bits (225), Expect = 2e-17 Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 1/246 (0%) Frame = +1 Query: 640 DYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTD 819 D+ P GY ++LV VD + W+EA PTK K L IFPRFG+P+ L TD Sbjct: 2 DFTEVKPRLYGYKYLLVFVDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTD 61 Query: 820 DGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI-VNRSRKNWSS 996 +G F+ V + + ++ ++ Y PQSSGQVE NR IK L K+ + ++W Sbjct: 62 NGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVL 121 Query: 997 KLDDALWAYGTAYKNPMGMSPYKMVYGKACYFPLELEHKAYWAIKELNFDFKLAGEKWLF 1176 L AL+ P G++PY+++YG P L + + + L Sbjct: 122 LLPLALYRARNT-PGPHGLTPYEILYGA----PPPLVNFPDPDMTRVTNSPSLQAHLQAL 176 Query: 1177 DISSLDEWRTQAYENAKLFKEKVKRWHDKRIQKREFNVGDYVLLYNSRLRFFAGRLLSKW 1356 + + WR A ++E++ D+ + + VGD V + + + L +W Sbjct: 177 YLVQHEVWRPL----AAAYQEQL----DRPVVPHPYRVGDTVWVRRHQTK----NLEPRW 224 Query: 1357 EGPYVI 1374 +GPY + Sbjct: 225 KGPYTV 230
>P03356:POL_MLVAV Pol polyprotein [Contains: Protease - AKV murine leukemia virus (AKR| (endogenous) murine leukemia virus) Length = 1196 Score = 91.3 bits (225), Expect = 2e-17 Identities = 72/246 (29%), Positives = 110/246 (44%), Gaps = 1/246 (0%) Frame = +1 Query: 640 DYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTD 819 D+ P GY ++LV VD + WVEA PTK K L IFPRFG+P+ L +D Sbjct: 916 DFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGMPQVLGSD 975 Query: 820 DGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI-VNRSRKNWSS 996 +G F V + + ++ ++ Y PQSSGQVE NR IK L K+ + ++W Sbjct: 976 NGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAGTRDWVL 1035 Query: 997 KLDDALWAYGTAYKNPMGMSPYKMVYGKACYFPLELEHKAYWAIKELNFDFKLAGEKWLF 1176 L AL+ P G++PY+++YG P L + + EL L Sbjct: 1036 LLPLALYRARNT-PGPHGLTPYEILYGA----PPPLVNFHDPDMSELTNSPSLQAHLQAL 1090 Query: 1177 DISSLDEWRTQAYENAKLFKEKVKRWHDKRIQKREFNVGDYVLLYNSRLRFFAGRLLSKW 1356 + W+ A E + D+ + F +GD V + + + L +W Sbjct: 1091 QTVQREIWKPLA--------EAYRDQLDQPVIPHPFRIGDSVWVRRHQTK----NLEPRW 1138 Query: 1357 EGPYVI 1374 +GPY + Sbjct: 1139 KGPYTV 1144
>P03355:POL_MLVMO Pol polyprotein [Contains: Protease - Moloney murine leukemia virus| (MoMLV) Length = 1199 Score = 90.9 bits (224), Expect = 2e-17 Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 1/240 (0%) Frame = +1 Query: 658 PSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFI 837 P GY ++LV +D + W+EA PTK K L IFPRFG+P+ L TD+G F+ Sbjct: 922 PGLYGYKYLLVFIDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFV 981 Query: 838 HGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI-VNRSRKNWSSKLDDAL 1014 V + + ++ ++ Y PQSSGQVE NR IK L K+ + ++W L AL Sbjct: 982 SKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLAL 1041 Query: 1015 WAYGTAYKNPMGMSPYKMVYGKACYFPLELEHKAYWAIKELNFDFKLAGEKWLFDISSLD 1194 + P G++PY+++YG P L + + + L + + Sbjct: 1042 YRARNT-PGPHGLTPYEILYGA----PPPLVNFPDPDMTRVTNSPSLQAHLQALYLVQHE 1096 Query: 1195 EWRTQAYENAKLFKEKVKRWHDKRIQKREFNVGDYVLLYNSRLRFFAGRLLSKWEGPYVI 1374 WR A ++E++ D+ + + VGD V + + + L +W+GPY + Sbjct: 1097 VWRPL----AAAYQEQL----DRPVVPHPYRVGDTVWVRRHQTK----NLEPRWKGPYTV 1144
>Q9UR07:RT23_SCHPO Retrotransposable element Tf2 155 kDa protein type 3 -| Schizosaccharomyces pombe (Fission yeast) Length = 1333 Score = 89.7 bits (221), Expect = 5e-17 Identities = 79/347 (22%), Positives = 151/347 (43%), Gaps = 6/347 (1%) Frame = +1 Query: 454 HAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMN-YSLVIKPFDV 630 H G ++ F W + K +++V +C CQ + + P+ +P++ Sbjct: 927 HPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWES 986 Query: 631 SGFDYMGPFPSSNGYTHVLVAVDYVTKWVEAIP-TKNADHHTSIKMLK*VIFPRFGVPRY 807 D++ P S+GY + V VD +K +P TK+ + +M + FG P+ Sbjct: 987 LSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKE 1046 Query: 808 LMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVNRSRKN 987 ++ D+ F ++ KY+ + + PY PQ+ GQ E +N+ ++ +L+ + + Sbjct: 1047 IIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNT 1106 Query: 988 WSSKLDDALWAYGTAYKNPMGMSPYKMVYG-KACYFPLELEHKAYWAIKELNFDFKLAGE 1164 W + +Y A + M+P+++V+ PLEL +F K Sbjct: 1107 WVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELP----------SFSDKTDEN 1156 Query: 1165 KWLFDISSLDEWRTQAYENAKLFKEKVKRWHDKRIQK-REFNVGDYVLLYNSRLRFF--A 1335 ++ ++T E+ K+K++ D +IQ+ EF GD V++ ++ F + Sbjct: 1157 SQ----ETIQVFQT-VKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKS 1211 Query: 1336 GRLLSKWEGPYVIEEVYRSGAIKINNTEGNFPRVVNGQRIKHYISGT 1476 +L + GP+ + + +SG NN E + P IKH S T Sbjct: 1212 NKLAPSFAGPFYV--LQKSGP---NNYELDLP-----DSIKHMFSST 1248
>Q9C0R2:RT22_SCHPO Retrotransposable element Tf2 155 kDa protein type 2 -| Schizosaccharomyces pombe (Fission yeast) Length = 1333 Score = 89.7 bits (221), Expect = 5e-17 Identities = 79/347 (22%), Positives = 151/347 (43%), Gaps = 6/347 (1%) Frame = +1 Query: 454 HAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMN-YSLVIKPFDV 630 H G ++ F W + K +++V +C CQ + + P+ +P++ Sbjct: 927 HPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWES 986 Query: 631 SGFDYMGPFPSSNGYTHVLVAVDYVTKWVEAIP-TKNADHHTSIKMLK*VIFPRFGVPRY 807 D++ P S+GY + V VD +K +P TK+ + +M + FG P+ Sbjct: 987 LSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKE 1046 Query: 808 LMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVNRSRKN 987 ++ D+ F ++ KY+ + + PY PQ+ GQ E +N+ ++ +L+ + + Sbjct: 1047 IIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNT 1106 Query: 988 WSSKLDDALWAYGTAYKNPMGMSPYKMVYG-KACYFPLELEHKAYWAIKELNFDFKLAGE 1164 W + +Y A + M+P+++V+ PLEL +F K Sbjct: 1107 WVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELP----------SFSDKTDEN 1156 Query: 1165 KWLFDISSLDEWRTQAYENAKLFKEKVKRWHDKRIQK-REFNVGDYVLLYNSRLRFF--A 1335 ++ ++T E+ K+K++ D +IQ+ EF GD V++ ++ F + Sbjct: 1157 SQ----ETIQVFQT-VKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKS 1211 Query: 1336 GRLLSKWEGPYVIEEVYRSGAIKINNTEGNFPRVVNGQRIKHYISGT 1476 +L + GP+ + + +SG NN E + P IKH S T Sbjct: 1212 NKLAPSFAGPFYV--LQKSGP---NNYELDLP-----DSIKHMFSST 1248
>Q05654:RT21_SCHPO Retrotransposable element Tf2 155 kDa protein type 1 -| Schizosaccharomyces pombe (Fission yeast) Length = 1333 Score = 89.7 bits (221), Expect = 5e-17 Identities = 79/347 (22%), Positives = 151/347 (43%), Gaps = 6/347 (1%) Frame = +1 Query: 454 HAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMN-YSLVIKPFDV 630 H G ++ F W + K +++V +C CQ + + P+ +P++ Sbjct: 927 HPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWES 986 Query: 631 SGFDYMGPFPSSNGYTHVLVAVDYVTKWVEAIP-TKNADHHTSIKMLK*VIFPRFGVPRY 807 D++ P S+GY + V VD +K +P TK+ + +M + FG P+ Sbjct: 987 LSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKE 1046 Query: 808 LMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVNRSRKN 987 ++ D+ F ++ KY+ + + PY PQ+ GQ E +N+ ++ +L+ + + Sbjct: 1047 IIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNT 1106 Query: 988 WSSKLDDALWAYGTAYKNPMGMSPYKMVYG-KACYFPLELEHKAYWAIKELNFDFKLAGE 1164 W + +Y A + M+P+++V+ PLEL +F K Sbjct: 1107 WVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELP----------SFSDKTDEN 1156 Query: 1165 KWLFDISSLDEWRTQAYENAKLFKEKVKRWHDKRIQK-REFNVGDYVLLYNSRLRFF--A 1335 ++ ++T E+ K+K++ D +IQ+ EF GD V++ ++ F + Sbjct: 1157 SQ----ETIQVFQT-VKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKS 1211 Query: 1336 GRLLSKWEGPYVIEEVYRSGAIKINNTEGNFPRVVNGQRIKHYISGT 1476 +L + GP+ + + +SG NN E + P IKH S T Sbjct: 1212 NKLAPSFAGPFYV--LQKSGP---NNYELDLP-----DSIKHMFSST 1248
>P21414:POL_GALV Pol polyprotein [Contains: Protease - Gibbon ape leukemia virus| (GALV) Length = 1165 Score = 88.2 bits (217), Expect = 2e-16 Identities = 85/293 (29%), Positives = 131/293 (44%), Gaps = 3/293 (1%) Frame = +1 Query: 505 PTLFKDARKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHV 684 P L R+ C C +T +E +P D+ P G ++ Sbjct: 839 PNLQSAVREVTSQCQACAMTNAVTTYRETGKRQR-GDRPGVYWEVDFTEIKPGRYGNKYL 897 Query: 685 LVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLA 864 LV +D + WVEA PTK K + I PRFG+P+ L +D+G F+ V + + Sbjct: 898 LVFIDTFSGWVEAFPTKTETALIVCKKILEEILPRFGIPKVLGSDNGPAFVAQVSQGLAT 957 Query: 865 KYDVNHRVASPYHPQSSGQVELSNREIKLILQKI-VNRSRKNWSSKLDDALWAYGTAYKN 1041 + +N ++ Y PQSSGQVE NR IK L K+ + K+W + L AL A Sbjct: 958 QLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVTLLPLALL---RARNT 1014 Query: 1042 P--MGMSPYKMVYGKACYFPLELEHKAYWAIKELNFDFKLAGEKWLFDISSLDEWRTQAY 1215 P G++PY+++YG P LE + + L D + + + +L+ RTQ + Sbjct: 1015 PGRFGLTPYEILYGGP---PPILE-----SGETLGPDDRFLPVLFT-HLKALEIVRTQIW 1065 Query: 1216 ENAKLFKEKVKRWHDKRIQKREFNVGDYVLLYNSRLRFFAGRLLSKWEGPYVI 1374 + K +V + I F VGD VL+ R L +W+GPY++ Sbjct: 1066 DQIK----EVYKPGTVTI-PHPFQVGDQVLVRRHR----PSSLEPRWKGPYLV 1109
>P34431:YL52_CAEEL Uncharacterized protein F44E2.2 - Caenorhabditis elegans| Length = 2186 Score = 86.7 bits (213), Expect = 4e-16 Identities = 72/312 (23%), Positives = 134/312 (42%), Gaps = 7/312 (2%) Frame = +1 Query: 454 HAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDVS 633 H G + +++ FYWP + V +C +C + +K Y + P ++ Sbjct: 1480 HFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCANDHSKLTSSLTPYRMTF-PLEIV 1538 Query: 634 GFDYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIK-MLK*VIFPRFGVPRYL 810 D M S G ++L +D TK+ A+P + T +K ++ +P L Sbjct: 1539 ACDLMDVGLSVQGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKL 1598 Query: 811 MTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVNRSRKNW 990 +TD G F++G+F + + H Y+ +++G VE N+ I I++K W Sbjct: 1599 LTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKK-KTAVPMEW 1657 Query: 991 SSKLDDALWAYGTAYKNPMGMSPYKMVYGKACYFPLELEHKAYWAIKELNFD-FKLAGEK 1167 ++ A++AY G +P +++G+ PLE+ + I + D +K + Sbjct: 1658 DDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPLEMSGEDAVGINYADMDEYKHLLTQ 1717 Query: 1168 WLFDISSLDEWRTQAYENAKLFKEKVKRWHDKRIQKREFNV---GDYVLLY--NSRLRFF 1332 L + + A E+A +E K D++ ++ G VLL + +L Sbjct: 1718 ELLKVQKI------AKEHAMREQESYKSLFDQKYASKKHRFPQPGSRVLLEIPSEKLGAQ 1771 Query: 1333 AGRLLSKWEGPY 1368 +L++KW GPY Sbjct: 1772 CPKLVNKWSGPY 1783
>P92516:M750_ARATH Uncharacterized mitochondrial protein AtMg00750 - Arabidopsis| thaliana (Mouse-ear cress) Length = 119 Score = 77.8 bits (190), Expect = 2e-13 Identities = 35/56 (62%), Positives = 41/56 (73%) Frame = +1 Query: 481 VLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDVSGFDYM 648 VLQ+GFYWPT FKDA FV SCD CQR GN TKR EMP ++ L ++ FDV G +M Sbjct: 35 VLQAGFYWPTTFKDAHGFVSSCDACQRKGNFTKRNEMPQHFILEVEVFDVWGIYFM 90
>Q7LHG5:YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein - Saccharomyces cerevisiae| (Baker's yeast) Length = 1498 Score = 77.0 bits (188), Expect = 4e-13 Identities = 83/373 (22%), Positives = 161/373 (43%), Gaps = 10/373 (2%) Frame = +1 Query: 448 GYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKR-----QEMPMNYSLV 612 G H G + +YWP L +++ +C +CQ I + R Q +P+ Sbjct: 1136 GGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEG-- 1193 Query: 613 IKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEAIPT-KNADHHTSIKMLK*VIFPR 789 + D+S G P+SN +LV VD +K I T K D I +L IF Sbjct: 1194 -RWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSY 1252 Query: 790 FGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIV 969 G PR + +D ++++ + + ++S HPQ+ GQ E + + + +L+ V Sbjct: 1253 HGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYV 1312 Query: 970 NRSRKNWSSKLDDALWAYGTAYKNPMGMSPYKMVYGKACYFPLELEHKAYWAIKELNFDF 1149 + + +NW L + Y + +G SP+++ G Y P K+ + +F Sbjct: 1313 STNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLG---YLPNTPAIKSDDEVNARSF-- 1367 Query: 1150 KLAGEKWLFDISSLDEWRTQAYENAKLFKEKVKRWHDKRIQKREFNVGDYVLLYNSRLRF 1329 + + +L + E+A++ +++ +++R + N+GD+VL++ F Sbjct: 1368 --TAVELAKHLKALTIQTKEQLEHAQI---EMETNNNQRRKPLLLNIGDHVLVHRDAY-F 1421 Query: 1330 FAG---RLLSKWEGPYVIEEVYRSGAIKIN-NTEGNFPRVVNGQRIKHYISGTPINVETY 1497 G ++ + GP+ + + A +++ N+ RV+N Q +K + + T Sbjct: 1422 KKGAYMKVQQIYVGPFRVVKKINDNAYELDLNSHKKKHRVINVQFLKSLYT---VQTRTQ 1478 Query: 1498 IINVVTPEEYIRD 1536 IN P +R+ Sbjct: 1479 RINQSAPLRELRE 1491
>P03359:POL_WMSV Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -| Woolly monkey sarcoma virus (WMSV) (Smian sarcoma-associated virus) Length = 294 Score = 76.3 bits (186), Expect = 6e-13 Identities = 72/246 (29%), Positives = 115/246 (46%), Gaps = 1/246 (0%) Frame = +1 Query: 640 DYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTD 819 D+ P G ++LV +D + WVEA PTK T++ + K P +P+ L +D Sbjct: 16 DFTEVKPGRYGNRYLLVFIDTFSGWVEAFPTKT---ETALTVCKRNSTP-LRIPKVLGSD 71 Query: 820 DGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI-VNRSRKNWSS 996 +G F+ V + + + +N ++ Y PQSSGQVE NR IK L K+ + K+W + Sbjct: 72 NGPAFVAQVSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVA 131 Query: 997 KLDDALWAYGTAYKNPMGMSPYKMVYGKACYFPLELEHKAYWAIKELNFDFKLAGEKWLF 1176 L AL + G++PY+++YG P + + NF L Sbjct: 132 LLPLALLRAKNT-PSRFGLTPYEILYGG----PPPILESGGTLGPDDNFLPVL-----FT 181 Query: 1177 DISSLDEWRTQAYENAKLFKEKVKRWHDKRIQKREFNVGDYVLLYNSRLRFFAGRLLSKW 1356 + +L+ RTQ ++ K +V + I F VGD VL+ R G L +W Sbjct: 182 HLKALEVVRTQIWDQIK----EVYKPGTVAI-PHPFQVGDQVLVRRHR----PGSLEPRW 232 Query: 1357 EGPYVI 1374 +GPY++ Sbjct: 233 KGPYLV 238
>Q99315:YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein - Saccharomyces cerevisiae| (Baker's yeast) Length = 1547 Score = 75.5 bits (184), Expect = 1e-12 Identities = 77/350 (22%), Positives = 153/350 (43%), Gaps = 10/350 (2%) Frame = +1 Query: 448 GYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKR-----QEMPMNYSLV 612 G H G + +YWP L +++ +C +CQ I + R Q +P+ Sbjct: 1110 GGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEG-- 1167 Query: 613 IKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEAIPT-KNADHHTSIKMLK*VIFPR 789 + D+S G P+SN +LV VD +K I T K D I +L IF Sbjct: 1168 -RWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSY 1226 Query: 790 FGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIV 969 G PR + +D ++++ + + ++S HPQ+ GQ E + + + +L+ Sbjct: 1227 HGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYA 1286 Query: 970 NRSRKNWSSKLDDALWAYGTAYKNPMGMSPYKMVYGKACYFPLELEHKAYWAIKELNFDF 1149 + + +NW L + Y + +G SP+++ G Y P K+ + +F Sbjct: 1287 STNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLG---YLPNTPAIKSDDEVNARSF-- 1341 Query: 1150 KLAGEKWLFDISSLDEWRTQAYENAKLFKEKVKRWHDKRIQKREFNVGDYVLLYNSRLRF 1329 + + +L + E+A++ +++ +++R + N+GD+VL++ F Sbjct: 1342 --TAVELAKHLKALTIQTKEQLEHAQI---EMETNNNQRRKPLLLNIGDHVLVHRDAY-F 1395 Query: 1330 FAG---RLLSKWEGPYVIEEVYRSGAIKIN-NTEGNFPRVVNGQRIKHYI 1467 G ++ + GP+ + + A +++ N+ RV+N Q +K ++ Sbjct: 1396 KKGAYMKVQQIYVGPFRVVKKINDNAYELDLNSHKKKHRVINVQFLKKFV 1445
>Q09575:YRD6_CAEEL Uncharacterized protein K02A2.6 - Caenorhabditis elegans| Length = 1268 Score = 65.1 bits (157), Expect = 1e-09 Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 2/211 (0%) Frame = +1 Query: 454 HAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMN-YSLVIKPFDV 630 H G + +S +W L D V C+ CQ N + +P+N + + P+ Sbjct: 794 HPGIVQMKQKARSFVFWRGLDSDIENMVRHCNNCQE--NSKMPRVVPLNPWPVPEAPWKR 851 Query: 631 SGFDYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYL 810 D+ GP NG ++LV VD TK+ E T++ T+I +L+ IF G P + Sbjct: 852 IHIDFAGPL---NG-CYLLVVVDAKTKYAEVKLTRSISAVTTIDLLE-EIFSIHGYPETI 906 Query: 811 MTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVNRSRKNW 990 ++D+G+ +F +M + + H+ ++ Y+P+S+G E +K + KI N Sbjct: 907 ISDNGTQLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAERFVDTLKRGIAKIKGEGSVN- 965 Query: 991 SSKLDDALWAY-GTAYKNPMGMSPYKMVYGK 1080 L+ L +Y T + G +P + +G+ Sbjct: 966 QQILNKFLISYRNTPHSALNGSTPAECHFGR 996
>Q79666:POL_HV1MV Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| MVP5180 group O) (HIV-1) Length = 1446 Score = 51.6 bits (122), Expect = 2e-05 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + + L S F P + A++ + SC +C G T Q Sbjct: 1152 GIDQAQEDHEKY-------HSNWRALASDFGLPPIV--AKEIIASCPKCHIKGEATHGQ- 1201 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++YS I D + + G ++VAV + ++EA IP + T+ Sbjct: 1202 --VDYSPEIWQMDCTHLE--GKI--------IIVAVHVASDFIEAEVIPAETGQE-TAYF 1248 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+G +F + + H PY+PQS G VE N+E Sbjct: 1249 LLK--LAARWPV-KVIHTDNGPNFTSAAMKAACWWTGIQHEFGIPYNPQSQGVVEAMNKE 1305 Query: 943 IKLILQKI 966 +K I+Q++ Sbjct: 1306 LKSIIQQV 1313
>Q9Q720:POL_HV1V9 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| VI991 group M subtype H) (HIV-1) Length = 1436 Score = 51.2 bits (121), Expect = 2e-05 Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+V E Y + + + S F P + A++ V SCD+CQ G Q Sbjct: 1152 GIDKAQVQHEKY-------HSNWRAMASDFNLPPIV--AKEIVASCDKCQLKGEAMHGQ- 1201 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + G +LVAV + ++EA IP + T+ Sbjct: 1202 --VDCSPGIWQLDCTHLE--GKI--------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1248 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F + D++ PY+PQS G VE N+E Sbjct: 1249 ILK--LAGRWPV-KMIHTDNGSNFTSAAVKAACWWADIHQEFGIPYNPQSQGVVESMNKE 1305 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1306 LKKIIGQV 1313
>Q9QC07:POK7_HUMAN HERV-K_1q23.3 provirus ancestral Pol protein - Homo sapiens (Human)| Length = 812 Score = 50.4 bits (119), Expect = 4e-05 Identities = 40/150 (26%), Positives = 62/150 (41%) Frame = +1 Query: 514 FKDARKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVA 693 +K A+ V C +CQ + T QE +N + + +M Y HV V Sbjct: 614 WKQAKDIVQHCTQCQVLDLPT--QEAGVNPEVCVLMHYGKWMSHMYLHLGRLSYVHVTVD 671 Query: 694 VDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYD 873 Y T + H +L F GVP + TD+G + F+K L+++ Sbjct: 672 T-YSHFMCATCQTGESTSHVKKHLLS--CFAVMGVPEKIKTDNGPGYCSKAFQKFLSQWK 728 Query: 874 VNHRVASPYHPQSSGQVELSNREIKLILQK 963 ++H PY+ Q VE +NR +K L K Sbjct: 729 ISHTTGIPYNSQGQAIVERTNRTLKTQLVK 758
>O91080:POL_HV1YF Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| YBF30 group N) (HIV-1) Length = 1449 Score = 50.1 bits (118), Expect = 5e-05 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 2/186 (1%) Frame = +1 Query: 415 DPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMP 594 D E + E + YH+ K + S F P + A++ V SCD+CQ G Q Sbjct: 1160 DGIEKAQEDHDRYHSN----WKAMASDFNLPPIV--AKEIVASCDKCQLKGEAMHGQ--- 1210 Query: 595 MNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIKML 768 +N S + D + + G +LVAV + ++EA IP + T+ +L Sbjct: 1211 VNCSPGVWQLDCTHLE--GKI--------ILVAVHVASGYLEAEVIPAETGQE-TAYFIL 1259 Query: 769 K*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIK 948 K + R+ V + + TD+GS+F + ++ PY+PQS G VE N+E+K Sbjct: 1260 K--LAGRWPV-KVIHTDNGSNFTSATVKAACWWANIKQEFGIPYNPQSQGAVESMNKELK 1316 Query: 949 LILQKI 966 I+ +I Sbjct: 1317 KIIGQI 1322
>P03363:POL_HTLV2 Gag-Pro-Pol polyprotein - Human T-cell leukemia virus 2 (HTLV-2)| Length = 1461 Score = 50.1 bits (118), Expect = 5e-05 Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 10/194 (5%) Frame = +1 Query: 517 KDARKFVLSCDECQRIGNITKRQEMPMNY---SLV---IKPFDVSGFDYMGPFPSSNGYT 678 ++A+ V +C CQ I + + MP Y L+ I DV+ + Y Y Sbjct: 1190 REAKSLVQTCHTCQTINS---QHHMPRGYIRRGLLPNHIWQGDVTHYKY-------KKYK 1239 Query: 679 HVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VI--FPRFGVPRYLMTDDGSHFIHGVFR 852 + L +V + A+ TS + + V+ G P ++ TD+G F+ F+ Sbjct: 1240 YCLHV--WVDTFSGAVSVSCKKKETSCETISAVLQAISLLGKPLHINTDNGPAFLSQEFQ 1297 Query: 853 KMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQK-IVNRSRKNWSSKLDDALWAYGT 1029 + Y + H PY+P SSG VE +N IK +L K +++ + + ALW Sbjct: 1298 EFCTSYRIKHSTHIPYNPTSSGLVERTNGVIKNLLNKYLLDCPNLPLDNAIHKALWTLNQ 1357 Query: 1030 A-YKNPMGMSPYKM 1068 NP G + +++ Sbjct: 1358 LNVMNPSGKTRWQI 1371
>Q1A249:POL_SIVEK Gag-Pol polyprotein - Simian immunodeficiency virus (isolate EK505)| (SIV-cpz) (Chimpanzee immunodeficiency virus) Length = 1448 Score = 49.3 bits (116), Expect = 8e-05 Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + K + S F P + A++ V SCD+CQ G Q Sbjct: 1160 GIDKAQEEHERY-------HSNWKAMASDFNLPPIV--AKEIVASCDKCQLKGEAIHGQ- 1209 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 +N S + D + + G +LVAV + ++EA IP + T+ Sbjct: 1210 --INCSPGVWQLDCTHLE--GKI--------ILVAVHVASGYLEAEVIPAETGQE-TAYF 1256 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F + ++ PY+PQS G VE N+E Sbjct: 1257 ILK--LAGRWPV-KVIHTDNGSNFTSATVKAACWWANIQQEFGIPYNPQSQGAVESMNKE 1313 Query: 943 IKLILQKI 966 +K I+ +I Sbjct: 1314 LKKIIGQI 1321
>Q9IDV9:POL_HV1YB Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| YBF106 group N) (HIV-1) Length = 1449 Score = 49.3 bits (116), Expect = 8e-05 Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 2/186 (1%) Frame = +1 Query: 415 DPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMP 594 D E + E + YH+ K + S F P + A++ V SCD+CQ G Q Sbjct: 1160 DGIEKAQEEHERYHSN----WKAMASDFNLPPIV--AKEIVASCDKCQLKGEAMHGQ--- 1210 Query: 595 MNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIKML 768 +N S + D + + G +LVAV + ++EA IP + T+ +L Sbjct: 1211 INCSPGVWQLDCTHLE--GKI--------ILVAVHVASGYLEAEVIPAETGQE-TAYFIL 1259 Query: 769 K*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIK 948 K + R+ V + + TD+G +FI + + PY+PQS G VE N+E+K Sbjct: 1260 K--LAGRWPV-KVIHTDNGPNFISATVKAACWWAGIKQEFGIPYNPQSQGAVESMNKELK 1316 Query: 949 LILQKI 966 I+ +I Sbjct: 1317 KIIGQI 1322
>P63133:POK6_HUMAN HERV-K_8p23.1 provirus ancestral Pol protein - Homo sapiens (Human)| Length = 956 Score = 49.3 bits (116), Expect = 8e-05 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 1/151 (0%) Frame = +1 Query: 514 FKDARKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVA 693 +K A+ V C +CQ + T QE +N + P + D + PS ++V V Sbjct: 614 WKQAKDIVQHCTQCQVLHLPT--QEAGVN-PRGLCPNALWQMD-VTHVPSFGRLSYVHVT 669 Query: 694 VDYVTKWVEAI-PTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKY 870 VD + ++ A T + H +L F GVP + TD+G + F+K L+++ Sbjct: 670 VDTYSHFIWATCQTGESTSHVKKHLLS--CFAVMGVPEKIKTDNGPGYCSKAFQKFLSQW 727 Query: 871 DVNHRVASPYHPQSSGQVELSNREIKLILQK 963 ++H PY+ Q VE +NR +K L K Sbjct: 728 KISHTTGIPYNSQGQAIVERTNRTLKTQLVK 758
>P63132:POK5_HUMAN HERV-K_19p13.11 provirus ancestral Pol protein - Homo sapiens (Human)| Length = 956 Score = 49.3 bits (116), Expect = 8e-05 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 1/151 (0%) Frame = +1 Query: 514 FKDARKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVA 693 +K A+ V C +CQ + T QE +N + P + D + PS ++V V Sbjct: 614 WKQAKDIVQHCTQCQVLHLPT--QEAGVN-PRGLCPNALWQMD-VTHVPSFGRLSYVHVT 669 Query: 694 VDYVTKWVEAI-PTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKY 870 VD + ++ A T + H +L F GVP + TD+G + F+K L+++ Sbjct: 670 VDTYSHFIWATCQTGESTSHVKKHLLS--CFAVMGVPEKIKTDNGPGYCSKAFQKFLSQW 727 Query: 871 DVNHRVASPYHPQSSGQVELSNREIKLILQK 963 ++H PY+ Q VE +NR +K L K Sbjct: 728 KISHTTGIPYNSQGQAIVERTNRTLKTQLVK 758
>Q9BXR3:POK2_HUMAN HERV-K_7p22.1 provirus ancestral Pol protein - Homo sapiens (Human)| Length = 956 Score = 49.3 bits (116), Expect = 8e-05 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 1/151 (0%) Frame = +1 Query: 514 FKDARKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVA 693 +K A+ V C +CQ + T QE +N + P + D + PS ++V V Sbjct: 614 WKQAKDIVQHCTQCQVLHLPT--QEAGVN-PRGLCPNALWQMD-VTHVPSFGRLSYVHVT 669 Query: 694 VDYVTKWVEAI-PTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKY 870 VD + ++ A T + H +L F GVP + TD+G + F+K L+++ Sbjct: 670 VDTYSHFIWATCQTGESTSHVKKHLLS--CFAVMGVPEKIKTDNGPGYCSKAFQKFLSQW 727 Query: 871 DVNHRVASPYHPQSSGQVELSNREIKLILQK 963 ++H PY+ Q VE +NR +K L K Sbjct: 728 KISHTTGIPYNSQGQAIVERTNRTLKTQLVK 758
>Q9UQG0:POK20_HUMAN HERV-K_3q27.3 provirus ancestral Pol protein [Includes: Reverse| transcriptase - Homo sapiens (Human) Length = 969 Score = 49.3 bits (116), Expect = 8e-05 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 1/151 (0%) Frame = +1 Query: 514 FKDARKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVA 693 +K A+ V C +CQ + T QE +N + P + D + PS ++V V Sbjct: 614 WKQAKDIVQHCTQCQVLHLPT--QEAGVN-PRGLCPNALWQMD-VTHVPSFGRLSYVHVT 669 Query: 694 VDYVTKWVEAI-PTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKY 870 VD + ++ A T + H +L F GVP + TD+G + F+K L+++ Sbjct: 670 VDTYSHFIWATCQTGESTSHVKKHLLS--CFAVMGVPEKIKTDNGPGYCSKAFQKFLSQW 727 Query: 871 DVNHRVASPYHPQSSGQVELSNREIKLILQK 963 ++H PY+ Q VE +NR +K L K Sbjct: 728 KISHTTGIPYNSQGQAIVERTNRTLKTQLVK 758
>P63135:POK12_HUMAN HERV-K_1q22 provirus ancestral Pol protein - Homo sapiens (Human)| Length = 1459 Score = 49.3 bits (116), Expect = 8e-05 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 1/151 (0%) Frame = +1 Query: 514 FKDARKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVA 693 +K A+ V C +CQ + T QE +N + P + D + PS ++V V Sbjct: 614 WKQAKDIVQHCTQCQILHLPT--QEAGVN-PRGLCPNALWQMD-VTHVPSFGRLSYVHVT 669 Query: 694 VDYVTKWVEAI-PTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKY 870 VD + ++ A T + H +L F GVP + TD+G + F+K L+++ Sbjct: 670 VDTYSHFIWATCQTGESTSHVKKHLLS--CFAVMGVPEKIKTDNGPGYCSKAFQKFLSQW 727 Query: 871 DVNHRVASPYHPQSSGQVELSNREIKLILQK 963 ++H PY+ Q VE +NR +K L K Sbjct: 728 KISHTTGIPYNSQGQAIVERTNRTLKTQLVK 758
>P10266:POK10_HUMAN HERV-K_5q33.3 provirus ancestral Pol protein - Homo sapiens (Human)| Length = 1014 Score = 49.3 bits (116), Expect = 8e-05 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 1/151 (0%) Frame = +1 Query: 514 FKDARKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVA 693 +K A+ V C +CQ + T QE +N + P + D + PS ++V V Sbjct: 614 WKQAKDIVQHCTQCQVLHLPT--QEAGVN-PRGLCPNALWQMD-VTHVPSFGRLSYVHVT 669 Query: 694 VDYVTKWVEAI-PTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKY 870 VD + ++ A T + H +L F GVP + TD+G + F+K L+++ Sbjct: 670 VDTYSHFIWATCQTGESTSHVKKHLLS--CFAVMGVPEKIKTDNGPGYCSKAFQKFLSQW 727 Query: 871 DVNHRVASPYHPQSSGQVELSNREIKLILQK 963 ++H PY+ Q VE +NR +K L K Sbjct: 728 KISHTTGIPYNSQGQAIVERTNRTLKTQLVK 758
>Q9WC54:POL_HV1S2 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| SE9280 group M subtype J) (HIV-1) Length = 1432 Score = 48.5 bits (114), Expect = 1e-04 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + + + S F P + A++ V SCD+CQ G Q Sbjct: 1148 GIDKAQEDHEKY-------HSNWRAMASDFNLPPVV--AKEIVASCDKCQLKGEAMHGQ- 1197 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + +LVAV + ++EA IP + + Sbjct: 1198 --VDCSPGIWQLDCTHLEGKV----------ILVAVHVASGYIEAEVIPAETGQE-AAFF 1244 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F G + D+ PY+PQS G VE N+E Sbjct: 1245 ILK--LAGRWPV-KVIHTDNGSNFTSGAVKAACWWADIKQEFGIPYNPQSQGVVESMNKE 1301 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1302 LKKIIGQV 1309
>O93215:POL_HV190 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| 90CF056 group M subtype H) (HIV-1) Length = 1435 Score = 48.1 bits (113), Expect = 2e-04 Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + + S F P + A++ V SCD+CQ G Q Sbjct: 1151 GIDKAQEEHERY-------HNNWRAVASDFNLPPIV--AKEIVASCDKCQLKGEAMHGQ- 1200 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + +LVAV + ++EA IP + T+ Sbjct: 1201 --VDCSPGIWQLDCTHLEGQV----------ILVAVHVASGYIEAEVIPAETGKE-TAYF 1247 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F + D+ PY+PQS G VE N+E Sbjct: 1248 LLK--LASRWPV-KVIHTDNGSNFTSAAVKAACWWADIQQEFGIPYNPQSQGVVESMNKE 1304 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1305 LKKIIGQV 1312
>P63136:POK17_HUMAN HERV-K_11q22.1 provirus ancestral Pol protein [Includes: Reverse| transcriptase - Homo sapiens (Human) Length = 954 Score = 48.1 bits (113), Expect = 2e-04 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 1/103 (0%) Frame = +1 Query: 658 PSSNGYTHVLVAVDYVTKWVEAI-PTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHF 834 PS ++V V VD + ++ A T + H +L F GVP + TD+G + Sbjct: 656 PSFGRLSYVHVTVDTYSHFIWATCHTGESTSHVKKHLLS--CFAVMGVPEKIKTDNGPGY 713 Query: 835 IHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQK 963 F+K L+++ ++H PY+ Q VE +NR +K L K Sbjct: 714 CSKAFQKFLSQWKISHTTGIPYNSQGQAIVERTNRTLKTQLVK 756
>P0C211:POL_HTL1L Gag-Pro-Pol polyprotein - Human T-cell leukemia virus 1 (isolate| Melanesia mel5 subtype C) (HTLV-1) Length = 1462 Score = 47.8 bits (112), Expect = 2e-04 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = +1 Query: 787 RFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQK- 963 + G P Y+ TD+G +I F M + H PY+P SSG VE SN +K +L K Sbjct: 1277 QLGKPSYINTDNGPAYISQDFLSMCTSLAIRHTTHVPYNPTSSGLVERSNGILKTLLYKY 1336 Query: 964 IVNRSRKNWSSKLDDALW 1017 +R + L ALW Sbjct: 1337 FTDRPDLPMDNALSIALW 1354
>P31623:POL_JSRV Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -| Sheep pulmonary adenomatosis virus (Jaagsiekte sheep retrovirus) (JSRV) Length = 870 Score = 47.4 bits (111), Expect = 3e-04 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 1/148 (0%) Frame = +1 Query: 523 ARKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDY 702 AR+ V SC C + + + P ++P + D + P +V V++D Sbjct: 620 ARQIVKSCSTCPQFFVLPQYGVNPRG----LRPNHLWQTD-VTHIPQFGRLKYVHVSIDT 674 Query: 703 VTKWVEA-IPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVN 879 + ++ A + T + H +L F G+P+ L TD+G + F++ + ++ Sbjct: 675 FSNFLMASLHTGESTRHCIQHLL--FCFSTSGIPQTLKTDNGPGYTSRSFQRFCLSFQIH 732 Query: 880 HRVASPYHPQSSGQVELSNREIKLILQK 963 H+ PY+PQ G VE +++ IK L K Sbjct: 733 HKTGIPYNPQGQGIVERAHQRIKHQLLK 760
>Q9WC63:POL_HV1S9 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| SE9173 group M subtype J) (HIV-1) Length = 1432 Score = 47.0 bits (110), Expect = 4e-04 Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 3/189 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E + YH+ R + S F P + A++ V SCD+CQ G Q Sbjct: 1148 GIDKAQ---EEHEKYHSNWRA----MASDFNLPPVV--AKEIVASCDKCQLKGEAMHGQ- 1197 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + +LVAV + ++EA IP + Sbjct: 1198 --VDCSPGIWQLDCTHLEGKV----------ILVAVHVASGYIEAEVIPAETGQEAAFF- 1244 Query: 763 MLK*VIFPRFGVP-RYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNR 939 ++ G P + + TD+GS+F G + D+ PY+PQS G VE N+ Sbjct: 1245 ----ILKLAGGWPVKAIHTDNGSNFTSGAVKAACWWADIKQEFGIPYNPQSQGVVESMNK 1300 Query: 940 EIKLILQKI 966 E+K I+ ++ Sbjct: 1301 ELKKIIGQV 1309
>Q9WJR5:POK3_HUMAN HERV-K_19q12 provirus ancestral Pol protein - Homo sapiens (Human)| Length = 959 Score = 47.0 bits (110), Expect = 4e-04 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 5/155 (3%) Frame = +1 Query: 514 FKDARKFVLSCDECQRIGNITKRQEMPMN----YSLVIKPFDVSGFDYMGPFPSSNGYTH 681 +K A+ V C +CQ + T QE +N + DV+ G ++ Sbjct: 617 WKQAKDIVQHCTQCQVLHLPT--QEAGVNPRGLCPNALWQMDVTHVSSFGRL------SY 668 Query: 682 VLVAVDYVTKWVEAI-PTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKM 858 + V VD + ++ A T + H +L F GVP + TD+G + F+K Sbjct: 669 IHVTVDTYSHFIWATCQTGESTSHVKKHLLS--CFAVMGVPEKIKTDNGPGYCSKAFQKF 726 Query: 859 LAKYDVNHRVASPYHPQSSGQVELSNREIKLILQK 963 L+++ ++H PY+ Q VE +NR +K L K Sbjct: 727 LSQWKISHTTGIPYNSQGQAIVERTNRTLKTQLVK 761
>P12894:POL_IPMAI Probable Pol polyprotein [Contains: Integrase - Mouse intracisternal| a-particle IL3 (IAP-IL3) Length = 814 Score = 46.6 bits (109), Expect = 5e-04 Identities = 50/178 (28%), Positives = 72/178 (40%), Gaps = 2/178 (1%) Frame = +1 Query: 436 EAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMNYSLVI 615 EA +H + L+S F K+AR V C C + P I Sbjct: 510 EAARNFHNNFHVTAETLRSRFSLTR--KEARDIVTQCQSCCEFLPVPHVGINPRG----I 563 Query: 616 KPFDVSGFDYMGPFPSSNGYTHVL-VAVDYVTKWVEAIP-TKNADHHTSIKMLK*VIFPR 789 +P V D SS G L V++D + + A P T H L+ + Sbjct: 564 RPLQVWQMDVT--HVSSFGKLQYLHVSIDTCSGIMFASPLTGEKASHVIQHCLE--AWSA 619 Query: 790 FGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQK 963 +G PR L TD+G + F++ + DV H PY+PQ G VE ++R +K L K Sbjct: 620 WGKPRLLKTDNGPAYTSQKFQQFCRQMDVTHLTGLPYNPQGQGIVERAHRTLKAYLIK 677
>P03362:POL_HTL1A Gag-Pro-Pol polyprotein - Human T-cell leukemia virus 1 (strain Japan| ATK-1 subtype A) (HTLV-1) Length = 1462 Score = 46.6 bits (109), Expect = 5e-04 Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 7/173 (4%) Frame = +1 Query: 520 DARKFVLSCDECQRIGNITKRQEMPMNY---SLV---IKPFDVSGFDYMGPFPSSNGYTH 681 +A + SC C R GN + +MP + L+ I D++ F Y N Sbjct: 1192 EASNILRSCHAC-RGGN--PQHQMPRGHIRRGLLPNHIWQGDITHFKY------KNTLYR 1242 Query: 682 VLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKML 861 + V VD + + A + +I L I G P Y+ TD+G +I F M Sbjct: 1243 LHVWVDTFSGAISATQKRKETSSEAISSLLQAI-AHLGKPSYINTDNGPAYISQDFLNMC 1301 Query: 862 AKYDVNHRVASPYHPQSSGQVELSNREIKLILQK-IVNRSRKNWSSKLDDALW 1017 + H PY+P SSG VE SN +K +L K ++ + L ALW Sbjct: 1302 TSLAIRHTTHVPYNPTSSGLVERSNGILKTLLYKYFTDKPDLPMDNALSIALW 1354
>P14078:POL_HTL1C Gag-Pro-Pol polyprotein - Human T-cell leukemia virus 1 (isolate| Caribbea HS-35 subtype A) (HTLV-1) Length = 1462 Score = 46.2 bits (108), Expect = 7e-04 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +1 Query: 793 GVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQK-IV 969 G P Y+ TD+G +I F M + H PY+P SSG VE SN +K +L K Sbjct: 1279 GKPSYINTDNGPAYISQDFLNMCTSLAIRHTTHVPYNPTSSGLVERSNGILKTLLYKYFT 1338 Query: 970 NRSRKNWSSKLDDALW 1017 ++ + L ALW Sbjct: 1339 DKPDLPMDNALSIALW 1354
>P51517:POL_SRV2 Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -| Simian retrovirus SRV-2 Length = 867 Score = 45.8 bits (107), Expect = 9e-04 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Frame = +1 Query: 679 HVLVAVDYVTKWVEA-IPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRK 855 +V V++D + ++ A + T A H +L F G P ++ TD+G + FR Sbjct: 669 YVHVSIDTFSGFLVATLQTGEATKHVIAHLLH--CFSIIGQPIHIKTDNGPGYTSSNFRA 726 Query: 856 MLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI 966 +K + H PY+PQ G VE ++ +K L+KI Sbjct: 727 FCSKLHIKHTFGIPYNPQGQGIVERAHLSLKNTLEKI 763
>Q9QSR3:POL_HV1VI Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| VI850 group M subtype F1) (HIV-1) Length = 1430 Score = 45.8 bits (107), Expect = 9e-04 Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + + S F P + A++ V SCD+CQ G Q Sbjct: 1146 GIDKAQEEHEKY-------HNNWRAMASDFNLPPIV--AKEIVASCDKCQLKGEAMHGQ- 1195 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + +LVAV ++++EA IP + T+ Sbjct: 1196 --VDCSPGIWQLDCTHLEGKV----------ILVAVHVASEYIEAEVIPAETGQE-TAYF 1242 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F + + PY+PQS G VE N+E Sbjct: 1243 ILK--LAGRWPV-KIIHTDNGSNFTSAAVKASCWWAGIQQEFGIPYNPQSQGVVESINKE 1299 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1300 LKKIIGQV 1307
>P04588:POL_HV1MA Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| MAL group M subtype A) (HIV-1) Length = 1440 Score = 45.8 bits (107), Expect = 9e-04 Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E + YH+ R + S F P + A++ V SCD+CQ G Q Sbjct: 1156 GIDKAQ---EEHEKYHSNWRA----MASDFNLPPIV--AKEIVASCDKCQLKGEAMHGQ- 1205 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + G ++VAV + ++EA IP + T+ Sbjct: 1206 --VDCSPGIWQLDCTHLE--GKI--------IIVAVHVASGYIEAEVIPAETGQE-TAYF 1252 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F + ++ PY+PQS G VE N+E Sbjct: 1253 ILK--LAGRWPV-KVVHTDNGSNFTSAAVKAACWWANIKQEFGIPYNPQSQGVVESMNKE 1309 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1310 LKKIIGQV 1317
>O41798:POL_HV19N Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| 92NG083 group M subtype G) (HIV-1) Length = 1435 Score = 45.8 bits (107), Expect = 9e-04 Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E + YH+ R + S F P + A++ V SCD+CQ G Q Sbjct: 1151 GIDKAQ---EEHERYHSNWRA----MASDFNLPPVV--AKEIVASCDKCQLKGEAMHGQ- 1200 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + G ++VAV + ++EA IP + T+ Sbjct: 1201 --VDCSPGIWQLDCTHLE--GKI--------IIVAVHVASGYIEAEVIPAETGQE-TAYF 1247 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+G +FI + ++ PY+PQS G VE N+E Sbjct: 1248 ILK--LAGRWPV-KVIHTDNGPNFISAAVKAACWWANITQEFGIPYNPQSQGVVESMNKE 1304 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1305 LKKIIGQV 1312
>Q9QBZ1:POL_HV1M2 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| MP257 group M subtype F2) (HIV-1) Length = 1434 Score = 45.4 bits (106), Expect = 0.001 Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E + YH+ R + S F P + A++ V SCD+CQ G Q Sbjct: 1150 GIDKAQ---EEHEKYHSNWRA----MASDFNLPPVV--AKEIVASCDKCQLKGEAMHGQ- 1199 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + G +LVAV + ++EA IP + + Sbjct: 1200 --VDCSPGIWQLDCTHLE--GKI--------ILVAVHVASGYIEAEVIPAETGQE-AAYF 1246 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F V + + PY+PQS G VE N+E Sbjct: 1247 ILK--LAGRWPV-KIIHTDNGSNFTSAVVKAACWWAGIQQEFGIPYNPQSQGVVESMNKE 1303 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1304 LKKIIGQV 1311
>P04585:POL_HV1H2 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| HXB2 group M subtype B) (HIV-1) Length = 1435 Score = 45.4 bits (106), Expect = 0.001 Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + + + S F P + A++ V SCD+CQ G Q Sbjct: 1151 GIDKAQDEHEKY-------HSNWRAMASDFNLPPVV--AKEIVASCDKCQLKGEAMHGQ- 1200 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + +LVAV + ++EA IP + T+ Sbjct: 1201 --VDCSPGIWQLDCTHLEGKV----------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1247 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F R + PY+PQS G VE N+E Sbjct: 1248 LLK--LAGRWPV-KTIHTDNGSNFTGATVRAACWWAGIKQEFGIPYNPQSQGVVESMNKE 1304 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1305 LKKIIGQV 1312
>P04587:POL_HV1B5 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| BH5 group M subtype B) (HIV-1) Length = 1447 Score = 45.4 bits (106), Expect = 0.001 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E + YH+ R + S F P + A++ V SCD+CQ G Q Sbjct: 1163 GIDKAQ---EEHEKYHSNWRA----MASDFNLPPVV--AKEIVASCDKCQLKGEAMHGQ- 1212 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + +LVAV + ++EA IP + T+ Sbjct: 1213 --VDCSPGIWQLDCTHLEGKV----------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1259 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F + + PY+PQS G VE N+E Sbjct: 1260 LLK--LAGRWPV-KTIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKE 1316 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1317 LKKIIGQV 1324
>Q77373:POL_HV1AN Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| ANT70 group O) (HIV-1) Length = 1435 Score = 45.4 bits (106), Expect = 0.001 Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + K L S F P + A++ + SC +C G Q Sbjct: 1150 GIDQAQEDHEKY-------HSNWKALASEFGLPPVV--AKEIIASCPKCHIKGEAIHGQ- 1199 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S + D + + G ++VAV + ++EA IP + T+ Sbjct: 1200 --VDCSPEVWQIDCTHME--GKI--------IIVAVHVASGFIEAEVIPAETGQE-TAYF 1246 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+G +F + ++ H PY+PQS G VE N+E Sbjct: 1247 LLK--LAARWPV-KVIHTDNGPNFTSTTMKAACWWANIQHEFGIPYNPQSQGVVEAMNKE 1303 Query: 943 IKLILQKI 966 +K I+Q++ Sbjct: 1304 LKSIIQQV 1311
>Q9QBY3:POL_HV196 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| 96CM-MP535 group M subtype K) (HIV-1) Length = 1430 Score = 45.4 bits (106), Expect = 0.001 Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + + S F P + A++ V SCD+CQ G Q Sbjct: 1146 GIDKAQEEHEKY-------HNNWRAMASDFNLPPIV--AKEIVASCDKCQLKGEAIHGQ- 1195 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + G +LVAV + ++EA IP + T+ Sbjct: 1196 --VDCSPGIWQLDCTHLE--GKI--------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1242 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+G++F V + V PY+PQS G VE N+E Sbjct: 1243 ILK--LAGRWPV-KVIHTDNGTNFTSTVVKAACWWAGVKQEFGIPYNPQSQGVVESMNKE 1299 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1300 LKKIIGQV 1307
>P11368:POL_IPMA Putative Pol polyprotein [Contains: Integrase - Mouse| intracisternal a-particle MIA14 (IAP-MIA14) Length = 867 Score = 45.1 bits (105), Expect = 0.001 Identities = 22/58 (37%), Positives = 32/58 (55%) Frame = +1 Query: 790 FGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQK 963 +G PR L TD+G + F++ + DV H PY+PQ G VE ++R +K L K Sbjct: 702 WGKPRLLKTDNGPAYTSQKFQQFCRQMDVTHLTGLPYNPQGQGIVERAHRTLKTYLIK 759
>Q9QBZ5:POL_HV1MP Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| MP255 group M subtype F2) (HIV-1) Length = 1430 Score = 45.1 bits (105), Expect = 0.001 Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + + S F P + A++ V +CD+CQ G Q Sbjct: 1146 GIDKAQEEHEKY-------HNNWRAMASDFNLPPVV--AKEIVANCDKCQLKGEAMHGQ- 1195 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + G +LVAV + ++EA IP + T+ Sbjct: 1196 --VDCSPGIWQLDCTHLE--GKI--------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1242 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F V + + PY+PQS G VE N+E Sbjct: 1243 ILK--LAGRWPV-KIIHTDNGSNFTSTVVKAACWWAGIQQEFGVPYNPQSQGVVESMNKE 1299 Query: 943 IKLILQKI 966 +K I+ +I Sbjct: 1300 LKKIIGQI 1307
>P03975:IGEB_MOUSE IgE-binding protein - Mus musculus (Mouse)| Length = 557 Score = 45.1 bits (105), Expect = 0.001 Identities = 22/58 (37%), Positives = 32/58 (55%) Frame = +1 Query: 790 FGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQK 963 +G PR L TD+G + F++ + DV H PY+PQ G VE ++R +K L K Sbjct: 432 WGKPRLLKTDNGPAYTSQKFQQFCRQMDVTHLTGLPYNPQGQGIVERAHRTLKAYLIK 489
>P35963:POL_HV1Y2 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| YU-2 group M subtype B) (HIV-1) Length = 1435 Score = 44.7 bits (104), Expect = 0.002 Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E + YH+ R + S F P + A++ V SCD+CQ G Q Sbjct: 1151 GIDKAQ---EEHEKYHSNWRA----MASDFNLPPVV--AKEIVASCDKCQLKGEAMHGQ- 1200 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + +LVAV + ++EA IP + T+ Sbjct: 1201 --VDCSPGIWQLDCTHLEGKV----------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1247 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + TD+GS+F + + PY+PQS G VE N+E Sbjct: 1248 LLK--LAGRWPVTT-IHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKE 1304 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1305 LKKIIGQV 1312
>P18802:POL_HV1ND Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| NDK group M subtype D) (HIV-1) Length = 1432 Score = 44.7 bits (104), Expect = 0.002 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + + S F P + A++ V SCD+CQ G Q Sbjct: 1148 GIDKAQEEHEKY-------HNNWRAMASDFNLPPVV--AKEIVASCDKCQLKGEAMHGQ- 1197 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + +LVAV + ++EA IP + T+ Sbjct: 1198 --VDCSPGIWQLDCTHLEGKV----------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1244 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F + + PY+PQS G VE N+E Sbjct: 1245 LLK--LAGRWPV-KVVHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKE 1301 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1302 LKKIIGQV 1309
>P04589:POL_HV1EL Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| ELI group M subtype D) (HIV-1) Length = 1435 Score = 44.7 bits (104), Expect = 0.002 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + + S F P + A++ V SCD+CQ G Q Sbjct: 1151 GIDKAQEEHEKY-------HNNWRAMASDFNLPPVV--AKEIVASCDKCQLKGEAMHGQ- 1200 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + +LVAV + ++EA IP + T+ Sbjct: 1201 --VDCSPGIWQLDCTHLEGKV----------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1247 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F + + PY+PQS G VE N+E Sbjct: 1248 LLK--LAGRWPV-KVVHTDNGSNFTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKE 1304 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1305 LKKIIGQV 1312
>P03366:POL_HV1B1 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| BH10 group M subtype B) (HIV-1) Length = 1447 Score = 44.7 bits (104), Expect = 0.002 Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + + + S F P + A++ V SCD+CQ G Q Sbjct: 1163 GIDKAQDEHEKY-------HSNWRAMASDFNLPPVV--AKEIVASCDKCQLKGEAMHGQ- 1212 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + +LVAV + ++EA IP + T+ Sbjct: 1213 --VDCSPGIWQLDCTHLEGKV----------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1259 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F + + PY+PQS G VE N+E Sbjct: 1260 LLK--LAGRWPV-KTIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKE 1316 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1317 LKKIIGQV 1324
>P12499:POL_HV1Z2 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| Z2/CDC-Z34 group M subtype D) (HIV-1) Length = 1436 Score = 44.3 bits (103), Expect = 0.003 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + + S F P + A++ V SCD+CQ G Q Sbjct: 1152 GIDKAQEEHEKY-------HNNWRAMASDFNLPPVV--AKEIVASCDKCQLKGEAMHGQ- 1201 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + +LVAV + ++EA IP + T+ Sbjct: 1202 --VDCSPGIWQLDCTHLEGKV----------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1248 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F + + PY+PQS G VE N+E Sbjct: 1249 ILK--LAGRWPV-KIVHTDNGSNFTSAAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKE 1305 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1306 LKKIIGQV 1313
>P24740:POL_HV1U4 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| U455 group M subtype A) (HIV-1) Length = 1428 Score = 44.3 bits (103), Expect = 0.003 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y H R + S F P + A++ V SC++CQ G Q Sbjct: 1144 GIDKAQEDHEKY---HCNWRA----MASDFNLPPVV--AKEIVASCNKCQLKGEAMHGQ- 1193 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + +LVAV + ++EA IP + T+ Sbjct: 1194 --VDCSPGIWQLDCTHLEGKV----------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1240 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F + + ++ PY+PQS G VE N+E Sbjct: 1241 ILK--LAGRWPV-KVIHTDNGSNFTSAAVKAVCWWANIQQEFGIPYNPQSQGVVESMNKE 1297 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1298 LKKIIGQV 1305
>O89940:POL_HV1SE Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| SE6165 group M subtype G) (HIV-1) Length = 1433 Score = 44.3 bits (103), Expect = 0.003 Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + + S F P + A++ V SCD+CQ G Q Sbjct: 1149 GIDKAQEEHERY-------HNNWRAMASDFNLPPIV--AKEIVASCDKCQLKGEAMHGQ- 1198 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + G ++VAV + ++EA IP + T+ Sbjct: 1199 --VDCSPGIWQLDCTHLE--GKI--------IIVAVHVASGYIEAEVIPAETGQE-TAYF 1245 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + TD+GS+F + ++ PY+PQS G VE N+E Sbjct: 1246 ILK--LAGRWPVT-VIHTDNGSNFTSAAVKAACWWANITQEFGIPYNPQSQGVVESMNKE 1302 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1303 LKKIIGQV 1310
>P20875:POL_HV1JR Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| JRCSF group M subtype B) (HIV-1) Length = 1439 Score = 44.3 bits (103), Expect = 0.003 Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + + + S F P + A++ V SCD+CQ G Q Sbjct: 1155 GIDKAQEDHEKY-------HSNWRAMASDFNLPPIV--AKEIVASCDKCQLKGEAMHGQ- 1204 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + G +LVAV + ++EA IP + T+ Sbjct: 1205 --VDCSPGIWQLDCTHLE--GKI--------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1251 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + TD+GS+F + + PY+PQS G VE N+E Sbjct: 1252 LLK--LAGRWPVTT-IHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKE 1308 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1309 LKKIIGQV 1316
>P03369:POL_HV1A2 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| ARV2/SF2 group M subtype B) (HIV-1) Length = 1437 Score = 44.3 bits (103), Expect = 0.003 Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E + YH+ R + S F P + A++ V SCD+CQ G Q Sbjct: 1153 GIDKAQ---EEHEKYHSNWRA----MASDFNLPPVV--AKEIVASCDKCQLKGEAMHGQ- 1202 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + G +LVAV + ++EA IP + T+ Sbjct: 1203 --VDCSPGIWQLDCTHLE--GKI--------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1249 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F + + PY+PQS G VE N E Sbjct: 1250 LLK--LAGRWPV-KTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNE 1306 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1307 LKKIIGQV 1314
>Q1A267:POL_SIVMB Gag-Pol polyprotein - Simian immunodeficiency virus (isolate MB66)| (SIV-cpz) (Chimpanzee immunodeficiency virus) Length = 1437 Score = 43.9 bits (102), Expect = 0.003 Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + + S F P + A++ V +CD+CQ G Q Sbjct: 1149 GIDKAQEEHEKY-------HNNWRAMASDFNLPPIV--AKEIVANCDKCQLKGEAIHGQ- 1198 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + G +LVAV + ++EA IP + T+ Sbjct: 1199 --VDCSPGIWQLDCTHLE--GKI--------ILVAVHVASGYMEAEVIPAETGQE-TAYF 1245 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F + + PY+PQS G VE N+E Sbjct: 1246 ILK--LAGRWPV-KVIHTDNGSNFTSSTVKAACWWAGIQQEFGIPYNPQSQGVVESMNKE 1302 Query: 943 IKLILQKI 966 +K I+ +I Sbjct: 1303 LKKIIGQI 1310
>P12451:POL_HV2SB Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| SBLISY subtype A) (HIV-2) Length = 1462 Score = 43.9 bits (102), Expect = 0.003 Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 2/183 (1%) Frame = +1 Query: 424 EVSFEAYGGYHAGDRT-AHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMN 600 E + E +G YH+ + AHK F P L AR+ V +C +CQ+ G Q +N Sbjct: 1175 EPAQEEHGKYHSNVKELAHK-----FGLPNLV--ARQIVNTCAQCQQKGEAIHGQ---VN 1224 Query: 601 YSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA-IPTKNADHHTSIKMLK*V 777 L D + + G ++VAV + ++EA + + + T++ +LK Sbjct: 1225 AELGTWQMDCTHLE--GKI--------IIVAVHVASGFIEAEVIPQESGRQTALFLLK-- 1272 Query: 778 IFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLIL 957 + R+ + +L TD+G++F + + + PY+PQS G VE N +K + Sbjct: 1273 LASRWPIT-HLHTDNGANFTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQI 1331 Query: 958 QKI 966 ++I Sbjct: 1332 ERI 1334
>P20892:POL_HV1OY Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| OYI group M subtype B) (HIV-1) Length = 1434 Score = 43.9 bits (102), Expect = 0.003 Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E + YH+ R + S F P + A++ V SCD+CQ G Q Sbjct: 1150 GIDKAQ---EEHEKYHSNWRA----MASDFNLPPVV--AKEIVASCDKCQLKGEAMHGQ- 1199 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + G +LVAV + ++EA IP + T+ Sbjct: 1200 --VDCSPGIWQLDCTHLE--GKI--------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1246 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F + + PY+PQS G VE N E Sbjct: 1247 ILK--LAGRWPV-KTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNE 1303 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1304 LKKIIGQV 1311
>P12497:POL_HV1N5 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| NY5 group M subtype B) (HIV-1) Length = 1435 Score = 43.9 bits (102), Expect = 0.003 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E + YH+ R + S F P + A++ V SCD+CQ G Q Sbjct: 1151 GIDKAQ---EEHEKYHSNWRA----MASDFNLPPVV--AKEIVASCDKCQLKGEAMHGQ- 1200 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + +LVAV + ++EA IP + T+ Sbjct: 1201 --VDCSPGIWQLDCTHLEGKV----------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1247 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F + + PY+PQS G +E N+E Sbjct: 1248 LLK--LAGRWPV-KTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKE 1304 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1305 LKKIIGQV 1312
>Q75002:POL_HV1ET Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| ETH2220 group M subtype C) (HIV-1) Length = 1439 Score = 43.9 bits (102), Expect = 0.003 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 2/149 (1%) Frame = +1 Query: 526 RKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYV 705 ++ V CD+CQ G Q +N S I D + + G +LVAV Sbjct: 1185 KEIVACCDKCQLKGEAIHGQ---VNCSPGIWQLDCTHLE--GKI--------ILVAVHVA 1231 Query: 706 TKWVEA--IPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVN 879 + ++EA IP + T+ +LK + R+ V R + TD+GS+F + + Sbjct: 1232 SGYIEAEVIPAETGQE-TAYFLLK--LAGRWPV-RVIHTDNGSNFTSNAVKAACWWAGIQ 1287 Query: 880 HRVASPYHPQSSGQVELSNREIKLILQKI 966 PY+PQS G VE N+E+K I+ ++ Sbjct: 1288 QEFGIPYNPQSQGVVESMNKELKKIIGQV 1316
>P03367:POL_HV1BR Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| BRU/LAI group M subtype B) (HIV-1) Length = 1447 Score = 43.9 bits (102), Expect = 0.003 Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + + + S F P + A++ V SCD+CQ G Q Sbjct: 1163 GIDKAQDEHEKY-------HSNWRAMASDFNLPPVV--AKEIVASCDKCQLKGEAMHGQ- 1212 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + +LVAV + ++EA IP + T+ Sbjct: 1213 --VDCSPGIWQLDCTHLEGKV----------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1259 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F + + PY+PQS G VE N+E Sbjct: 1260 LLK--LAGRWPV-KTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKE 1316 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1317 LKKIIGQV 1324
>Q73368:POL_HV1B9 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (strain| 89.6 group M subtype B) (HIV-1) Length = 1435 Score = 43.9 bits (102), Expect = 0.003 Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y T + + S F P + A++ V SC++CQ G Q Sbjct: 1151 GIDKAQEEHEKY-------HTNWRAMASDFNLPPVV--AKEIVASCNKCQLKGEAMHGQ- 1200 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + +LVAV + ++EA IP + T+ Sbjct: 1201 --VDCSPGIWQLDCTHLEGKV----------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1247 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F + + PY+PQS G VE N+E Sbjct: 1248 LLK--LAGRWPV-KTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKE 1304 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1305 LKKIIGQV 1312
>P25059:POL_BLVAU Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -| Bovine leukemia virus (isolate Australian) (BLV) Length = 852 Score = 43.9 bits (102), Expect = 0.003 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 8/176 (4%) Frame = +1 Query: 520 DARKFVLSCDECQRIGNI------TKRQEMPMNYSLVIKPFDVSGFDYMGPFPSSNGYTH 681 D R C+ CQR+ T ++ N+ I D++ + Y +T+ Sbjct: 588 DPRSPATLCETCQRLNPTGGGKMRTIQRGWAPNH---IWQADITHYKY-------KQFTY 637 Query: 682 VL-VAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKM 858 L V VD + A + T+I+ L I G P+ L TD G+++ F + Sbjct: 638 ALHVFVDTYSGATHASAKRGLTTQTTIEGLLEAIV-HLGRPKKLNTDQGANYTSKTFVRF 696 Query: 859 LAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI-VNRSRKNWSSKLDDALWAY 1023 ++ ++ PY+P SSG VE +N +KL+L K ++ + L ALW + Sbjct: 697 CQQFGISLSHHVPYNPTSSGLVERTNGLLKLLLSKYHLDEPHLPMTQALSRALWTH 752
>P04026:POL_IPHA Putative Pol polyprotein [Contains: Integrase - Hamster| intracisternal a-particle H18 (IAP-H18) Length = 863 Score = 43.5 bits (101), Expect = 0.004 Identities = 41/149 (27%), Positives = 62/149 (41%) Frame = +1 Query: 517 KDARKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAV 696 K+AR+ V C C P I+P + D + PS +V V+V Sbjct: 570 KEAREIVTQCQNCCEFLPTPHMGINPRG----IRPLQMWQMD-VTHIPSFGRLQYVHVSV 624 Query: 697 DYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDV 876 D + + A P I+ + +G PR + TD+G + FR+ + DV Sbjct: 625 DTCSGVMFATPLTGEKASYVIQHCL-EAWSAWGKPR-IKTDNGPAYTSQKFRQFCRQMDV 682 Query: 877 NHRVASPYHPQSSGQVELSNREIKLILQK 963 H PY+PQ G VE ++R +K L K Sbjct: 683 THLTGLPYNPQGQGIVERAHRTLKSYLIK 711
>O89290:POL_HV193 Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| 93BR020 group M subtype F1) (HIV-1) Length = 1430 Score = 43.5 bits (101), Expect = 0.004 Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + + S F P + A++ V SCD+CQ G Q Sbjct: 1146 GIDKAQEEHEKY-------HNNWRAMASDFNIPAVV--AKEIVASCDKCQLKGEAMHGQ- 1195 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + G +LVAV + ++EA IP + T+ Sbjct: 1196 --VDCSPGIWQLDCTHLE--GKI--------ILVAVHVASGYLEAEVIPAETGQE-TAYF 1242 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+G++F + + PY+PQS G VE N+E Sbjct: 1243 LLK--LAGRWPV-KTIHTDNGTNFTSATVKAACWWAGIQQEFGIPYNPQSQGVVESMNKE 1299 Query: 943 IKLILQKI 966 +K I+ +I Sbjct: 1300 LKKIIGQI 1307
>P27973:POL_SIVV1 Pol polyprotein [Contains: Protease - Simian immunodeficiency virus| agm.vervet (isolate AGM155) (SIV-agm.ver) (Simian immunodeficiency virus African green monkey vervet) Length = 1047 Score = 43.1 bits (100), Expect = 0.006 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Frame = +1 Query: 682 VLVAVDYVTKWVEA-IPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKM 858 V+VAV + ++EA + + T+ +LK I R+ + +L TD+G +F M Sbjct: 823 VIVAVHVASGFIEAEVIPRETGKETAKFLLK--IIGRWPIT-HLHTDNGPNFTSQEVAAM 879 Query: 859 LAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI 966 V H PY+PQS G +E N+++K I+ KI Sbjct: 880 CWWGKVEHTTGVPYNPQSQGSIESMNKQLKEIIGKI 915
>P22382:POL_SIVGB Pol polyprotein [Contains: Protease - Simian immunodeficiency virus| (isolate GB1) (SIV-mnd) (Simian immunodeficiency virus mandrill) Length = 1009 Score = 43.1 bits (100), Expect = 0.006 Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 1/182 (0%) Frame = +1 Query: 424 EVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMNY 603 E + E + YH+ + L+ F+ P L A++ V SC +C G K Q + Sbjct: 730 EPAQEEHEKYHSNEAQ----LREKFHLPALV--AKQIVQSCSKCCHHGEPIKGQT---DA 780 Query: 604 SLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA-IPTKNADHHTSIKMLK*VI 780 SL + D + + ++VAV + +++A + T T+ +LK + Sbjct: 781 SLGVWQIDCTHLENQ----------IIIVAVHVASGFMKAEVITAETGKKTAEFLLK--L 828 Query: 781 FPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQ 960 ++ + + L TD+G +F M + H PY+PQS G VE N+ +K +++ Sbjct: 829 AAQWPISK-LHTDNGPNFTSQEVETMCWWLGIEHTFGIPYNPQSQGVVENKNKYLKELIE 887 Query: 961 KI 966 KI Sbjct: 888 KI 889
>Q02836:POL_SIVG1 Pol polyprotein [Contains: Protease - Simian immunodeficiency virus| agm.grivet (isolate AGM gr-1) (SIV-agm.gri) (Simian immunodeficiency virus African green monkey grivet) Length = 1057 Score = 43.1 bits (100), Expect = 0.006 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Frame = +1 Query: 682 VLVAVDYVTKWVEA-IPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKM 858 ++VAV + ++EA + + T+ +LK + R+ V ++L TD+G +F + Sbjct: 827 IIVAVHVASGFIEAEVIPRETGKETAHFLLK--LLARWPV-KHLHTDNGPNFTSQNVAAV 883 Query: 859 LAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI 966 ++ H PY+PQS G VE NR++K I+ +I Sbjct: 884 CWWGNIEHTTGIPYNPQSQGSVESMNRQLKEIISQI 919
>P17283:POL_SIVCZ Pol polyprotein [Contains: Protease - Simian immunodeficiency virus| (isolate CPZ GAB1) (SIV-cpz) (Chimpanzee immunodeficiency virus) Length = 1027 Score = 43.1 bits (100), Expect = 0.006 Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + K + S F P + A++ V CD+CQ G Q Sbjct: 743 GIDRAQEEHERY-------HSNWKAMASDFNLPPIV--AKEIVAHCDKCQVKGEAMHGQ- 792 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 D S + G ++VAV + ++EA IP + T+ Sbjct: 793 -----------VDCSPGIWQVDCTHLEGKV-IIVAVHVASGYIEAEVIPAETGQE-TAYF 839 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+G +F + D+ PY+PQS G VE N+E Sbjct: 840 LLK--LAGRWPV-KTIHTDNGPNFTSAAVKAACWWADIKQEFGIPYNPQSQGVVESLNKE 896 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 897 LKKIIGQV 904
>P05959:POL_HV1RH Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate| RF/HAT3 group M subtype B) (HIV-1) Length = 1436 Score = 43.1 bits (100), Expect = 0.006 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + + + S F P + A++ V SCD+CQ G Q Sbjct: 1152 GIDKAQDEHEKY-------HSNWRAMASDFNLPPVV--AKEIVASCDKCQLKGEAMHGQ- 1201 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + G +LVAV + ++EA IP + T+ Sbjct: 1202 --VDCSPGIWQLDCTHLE--GKI--------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1248 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+GS+F + + PY+PQS G VE N++ Sbjct: 1249 ILK--LAGRWPV-KVIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKQ 1305 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1306 LKQIIGQV 1313
>P03371:POL_EIAVY Pol polyprotein [Contains: Protease - Equine infectious anemia virus| (strain Wyoming) (EIAV) Length = 1145 Score = 43.1 bits (100), Expect = 0.006 Identities = 24/70 (34%), Positives = 39/70 (55%) Frame = +1 Query: 751 TSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVEL 930 TS+ +L+ + R P+ L TD+G++F+ +L + H PYHP+S G VE Sbjct: 971 TSLAILE---WARLFSPKSLHTDNGTNFVAEPVVNLLKFLKIAHTTGIPYHPESQGIVER 1027 Query: 931 SNREIKLILQ 960 +NR +K +Q Sbjct: 1028 ANRTLKEKIQ 1037
>P32542:POL_EIAVC Pol polyprotein [Contains: Protease - Equine infectious anemia virus| (isolate CL22) (EIAV) Length = 1146 Score = 43.1 bits (100), Expect = 0.006 Identities = 24/70 (34%), Positives = 39/70 (55%) Frame = +1 Query: 751 TSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVEL 930 TS+ +L+ + R P+ L TD+G++F+ +L + H PYHP+S G VE Sbjct: 972 TSLAILE---WARLFSPKSLHTDNGTNFVAEPVVNLLKFLKIAHTTGIPYHPESQGIVER 1028 Query: 931 SNREIKLILQ 960 +NR +K +Q Sbjct: 1029 ANRTLKEKIQ 1038
>P11204:POL_EIAV9 Pol polyprotein [Contains: Protease - Equine infectious anemia virus| (isolate 1369) (EIAV) Length = 1146 Score = 43.1 bits (100), Expect = 0.006 Identities = 24/70 (34%), Positives = 39/70 (55%) Frame = +1 Query: 751 TSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVEL 930 TS+ +L+ + R P+ L TD+G++F+ +L + H PYHP+S G VE Sbjct: 972 TSLAILE---WARLFSPKSLHTDNGTNFVAEPVVNLLKFLKIAHTTGIPYHPESQGIVER 1028 Query: 931 SNREIKLILQ 960 +NR +K +Q Sbjct: 1029 ANRTLKEKIQ 1038
>P37007:YAGA_ECOLI Uncharacterized protein yagA - Escherichia coli| Length = 384 Score = 42.7 bits (99), Expect = 0.007 Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 5/108 (4%) Frame = +1 Query: 640 DYMGPFPSSNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTD 819 D+ G FP G H L +D +++ + + +++ +F R+G+P + D Sbjct: 148 DFKGHFPFGGGRCHPLTLLDDHSRFSLCLAHCTDERRETVQQQLVSVFERYGLPDRMTMD 207 Query: 820 DGSHF--IHGVFRKM---LAKYDVNHRVASPYHPQSSGQVELSNREIK 948 +GS + G + + L + + + PYHPQ+ G++E +R +K Sbjct: 208 NGSPWGDTTGTWTALELWLMRLGIRVGHSRPYHPQTQGKLERFHRSLK 255
>P03365:POL_MMTVB Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -| Mouse mammary tumor virus (strain BR6) Length = 899 Score = 42.7 bits (99), Expect = 0.007 Identities = 18/62 (29%), Positives = 35/62 (56%) Frame = +1 Query: 781 FPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQ 960 F G+P+ + TD+ ++ ++ LA++ ++H PY+PQ VE +++ IK L Sbjct: 690 FAYMGIPQKIKTDNAPAYVSRSIQEFLARWKISHVTGIPYNPQGQAIVERTHQNIKAQLN 749 Query: 961 KI 966 K+ Sbjct: 750 KL 751
>P27980:POL_SIVVG Pol polyprotein [Contains: Protease - Simian immunodeficiency virus| agm.vervet (isolate AGM3) (SIV-agm.ver) (Simian immunodeficiency virus African green monkey vervet) Length = 1046 Score = 42.4 bits (98), Expect = 0.010 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Frame = +1 Query: 682 VLVAVDYVTKWVEA-IPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKM 858 ++VAV + ++EA + + T+ +LK I R+ + + L TD+G +F M Sbjct: 828 IIVAVHVASGFIEAEVIPRETGKETAKFLLK--ILSRWPITQ-LHTDNGPNFTSQEVAAM 884 Query: 859 LAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI 966 + H PY+PQS G +E N+++K I+ KI Sbjct: 885 CWWGKIEHTTGVPYNPQSQGSIESMNKQLKEIIGKI 920
>P05961:POL_HV1MN Gag-Pol polyprotein - Human immunodeficiency virus type 1 (isolate MN| group M subtype B) (HIV-1) Length = 1441 Score = 42.4 bits (98), Expect = 0.010 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 2/188 (1%) Frame = +1 Query: 409 GTDPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQE 588 G D A+ E Y + + + S F P + A++ V SCD+CQ G Q Sbjct: 1157 GIDKAQEDHEKY-------HSNWRAMASDFNLPPIV--AKEIVASCDKCQLKGEAMHGQ- 1206 Query: 589 MPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA--IPTKNADHHTSIK 762 ++ S I D + + +LVAV + ++EA IP + T+ Sbjct: 1207 --VDCSPGIWQLDCTHLEGKV----------ILVAVHVASGYIEAEVIPAETGQE-TAYF 1253 Query: 763 MLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNRE 942 +LK + R+ V + + TD+G +F + + PY+PQS G +E N+E Sbjct: 1254 LLK--LAGRWPV-KTIHTDNGPNFTSTTVKAACWWTGIKQEFGIPYNPQSQGVIESMNKE 1310 Query: 943 IKLILQKI 966 +K I+ ++ Sbjct: 1311 LKKIIGQV 1318
>Q4U0X6:POL_HTL3P Gag-Pro-Pol polyprotein - Human T-cell leukemia virus 3 (strain| Pyl43) (HTLV-3) Length = 1440 Score = 42.4 bits (98), Expect = 0.010 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = +1 Query: 793 GVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQK-IV 969 G P + TD+G+ ++ F++ + + H PY+P SSG VE +N +K ++ K ++ Sbjct: 1257 GKPHSINTDNGTAYLSQEFQQFCSSLSIKHSTHVPYNPTSSGLVERTNGILKTLISKYLL 1316 Query: 970 NRSRKNWSSKLDDALW 1017 + + + +LW Sbjct: 1317 DNHHLPLETAISKSLW 1332
>P07572:POL_MPMV Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -| Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) Length = 867 Score = 42.0 bits (97), Expect = 0.012 Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 2/152 (1%) Frame = +1 Query: 517 KDARKFVLSCDECQRIGNITKRQEMPMN-YSLVIKPFDVSGFDYMGPFPSSNGYTHVLVA 693 + AR+ V C C + P + +I DV+ + G Y HV + Sbjct: 620 EQARQIVKQCPICVTYLPVPHLGVNPRGLFPNMIWQMDVTHYSEFGNLK----YIHV--S 673 Query: 694 VDYVTKWVEA-IPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKY 870 +D + ++ A + T H +L F G+P+ + TD+G + F++ + Sbjct: 674 IDTFSGFLLATLQTGETTKHVITHLLH--CFSIIGLPKQIKTDNGPGYTSKNFQEFCSTL 731 Query: 871 DVNHRVASPYHPQSSGQVELSNREIKLILQKI 966 + H PY+PQ G VE ++ +K ++KI Sbjct: 732 QIKHITGIPYNPQGQGIVERAHLSLKTTIEKI 763
>P18096:POL_HV2BE Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| BEN subtype A) (HIV-2) Length = 1550 Score = 42.0 bits (97), Expect = 0.012 Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 6/190 (3%) Frame = +1 Query: 415 DPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMP 594 +PA+ E Y + K L F P L AR+ V SC +CQ+ G Q Sbjct: 1176 EPAQEEHEKY-------HSIIKELTHKFGIPLLV--ARQIVNSCAQCQQKGEAIHGQ--- 1223 Query: 595 MNYSLVIKPFDVSGFDYMGPFPSSNGYTH-----VLVAVDYVTKWVEA-IPTKNADHHTS 756 +N + + D YTH ++VAV + ++EA + + + T+ Sbjct: 1224 VNAEIGVWQMD---------------YTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTA 1268 Query: 757 IKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSN 936 + +LK + R+ + +L TD+G +F + + + PY+PQS G VE N Sbjct: 1269 LFLLK--LASRWPIT-HLHTDNGPNFTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMN 1325 Query: 937 REIKLILQKI 966 +K + +I Sbjct: 1326 HHLKNQISRI 1335
>P04025:POL_SRV1 Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -| Simian retrovirus SRV-1 Length = 867 Score = 41.6 bits (96), Expect = 0.016 Identities = 18/62 (29%), Positives = 33/62 (53%) Frame = +1 Query: 781 FPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQ 960 F G+P+ + TD+G + F++ + + H PY+PQ G VE ++ +K ++ Sbjct: 702 FSIIGLPKQIKTDNGPGYTSKNFQEFCSTLQIKHVTGIPYNPQGQGIVERAHLSLKTTIE 761 Query: 961 KI 966 KI Sbjct: 762 KI 763
>P05895:POL_SIVVT Pol polyprotein [Contains: Protease - Simian immunodeficiency virus| agm.vervet (isolate AGM TYO-1) (SIV-agm.ver) (Simian immunodeficiency virus African green monkey vervet) Length = 1061 Score = 41.2 bits (95), Expect = 0.021 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Frame = +1 Query: 682 VLVAVDYVTKWVEA-IPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKM 858 V+VAV + ++EA + + T+ +LK I R+ + + L TD+G +F + Sbjct: 843 VIVAVHVASGFIEAEVIPRETGKETAKFLLK--ILSRWPITQ-LHTDNGPNFTSQEVAAI 899 Query: 859 LAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI 966 + H PY+PQS G +E N+++K I+ KI Sbjct: 900 CWWGKIEHTTGIPYNPQSQGSIESMNKQLKEIIGKI 935
>Q8AII1:POL_SIVTN Gag-Pol polyprotein - Simian immunodeficiency virus (isolate TAN1)| (SIV-cpz) (Chimpanzee immunodeficiency virus) Length = 1459 Score = 41.2 bits (95), Expect = 0.021 Identities = 26/102 (25%), Positives = 55/102 (53%), Gaps = 1/102 (0%) Frame = +1 Query: 682 VLVAVDYVTKWVEA-IPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKM 858 ++VAV + ++EA + + T+ +LK + R+ V + + TD+G +F + Sbjct: 1244 IIVAVHVASGFIEAEVIPEETGRETAYFILK--LAGRWPVKK-IHTDNGPNFTSTAVKAA 1300 Query: 859 LAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVNRSRK 984 + H PY+PQS G VE N+++K I++++ +++ + Sbjct: 1301 CWWAQIQHEFGIPYNPQSQGVVESMNKQLKQIIEQVRDQAEQ 1342
>P03361:POL_BLVJ Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -| Bovine leukemia virus (isolate Japanese BLV-1) (BLV) Length = 852 Score = 41.2 bits (95), Expect = 0.021 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Frame = +1 Query: 673 YTHVL-VAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVF 849 +T+ L V VD + A + T+I+ L I G P+ L TD G+++ F Sbjct: 635 FTYALHVFVDTYSGATHASAKRGLTTQTTIEGLLEAIV-HLGRPKKLNTDQGANYTSKTF 693 Query: 850 RKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI-VNRSRKNWSSKLDDALWAY 1023 + ++ V+ PY+P SSG E +N +KL+L K ++ + L ALW + Sbjct: 694 VRFCQQFGVSLSHHVPYNPTSSGLDERTNGLLKLLLSKYHLDEPHLPMTQALSRALWTH 752
>P05896:POL_SIVM1 Pol polyprotein [Contains: Protease - Simian immunodeficiency virus| (isolate Mm142-83) (SIV-mac) (Simian immunodeficiency virus rhesus monkey) Length = 1056 Score = 40.8 bits (94), Expect = 0.028 Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 1/182 (0%) Frame = +1 Query: 424 EVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMNY 603 E + E + YH+ K L F P L A++ V +CD+C + G Q +N Sbjct: 769 EPAQEEHSKYHSNI----KELVFKFGLPRLV--AKQIVDTCDKCHQKGEAIHGQ---VNS 819 Query: 604 SLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA-IPTKNADHHTSIKMLK*VI 780 L D + + G V+VAV + ++EA + + T++ +LK + Sbjct: 820 DLGTWQMDCTHLE--GKI--------VIVAVHVASGFIEAEVIPQETGRQTALFLLK--L 867 Query: 781 FPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQ 960 R+ + +L TD+G++F + + + H PY+PQS G VE N +K + Sbjct: 868 ASRWPIT-HLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQID 926 Query: 961 KI 966 +I Sbjct: 927 RI 928
>Q76634:POL_HV2UC Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| UC1 subtype B) (HIV-2) Length = 1471 Score = 40.8 bits (94), Expect = 0.028 Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 1/185 (0%) Frame = +1 Query: 415 DPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMP 594 +PA+ E Y G K L F P L A++ V SCD+CQ+ G Q Sbjct: 1176 EPAQEEHEKYHGNV-------KELVHKFGLPQLV--AKQIVNSCDKCQQKGEAVHGQ--- 1223 Query: 595 MNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA-IPTKNADHHTSIKMLK 771 +N L D + + ++VAV + ++EA + + T++ +LK Sbjct: 1224 VNAELGTWQMDCTHLEGKV----------IIVAVHVASGFIEAEVIPQETGRQTALFLLK 1273 Query: 772 *VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKL 951 + R+ + +L TD+G++F + + PY+PQS G VE N +K Sbjct: 1274 --LASRWPIT-HLHTDNGANFTSQDVKMAAWWIGIEQTFGVPYNPQSQGVVEAMNHHLKN 1330 Query: 952 ILQKI 966 + +I Sbjct: 1331 QIDRI 1335
>P18042:POL_HV2G1 Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| Ghana-1 subtype A) (HIV-2) Length = 1464 Score = 40.8 bits (94), Expect = 0.028 Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 1/182 (0%) Frame = +1 Query: 424 EVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMNY 603 E + E + YH+ K L F P L AR+ V +C +CQ+ G Q +N Sbjct: 1177 EPAQEEHEKYHSN----MKELTHKFGIPQLV--ARQIVNTCAQCQQKGEAIHGQ---VNA 1227 Query: 604 SLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA-IPTKNADHHTSIKMLK*VI 780 + + D + + G ++VAV + ++EA + + + T++ +LK + Sbjct: 1228 EIGVWQMDCTHLE--GKI--------IIVAVHVASGFIEAEVIPQESGRQTALFLLK--L 1275 Query: 781 FPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQ 960 R+ + +L TD+GS+F + + + PY+PQS G VE N +K + Sbjct: 1276 ASRWPIT-HLHTDNGSNFTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQIS 1334 Query: 961 KI 966 +I Sbjct: 1335 RI 1336
>P15833:POL_HV2D2 Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| D205 subtype B) (HIV-2) Length = 1465 Score = 40.8 bits (94), Expect = 0.028 Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 1/179 (0%) Frame = +1 Query: 415 DPAEVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMP 594 +PA+ E Y G K L F P L A++ V SCD+CQ+ G Q Sbjct: 1175 EPAQEEHEKYHGNV-------KELVHKFGIPQLV--AKQIVNSCDKCQQKGEAIHGQ--- 1222 Query: 595 MNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA-IPTKNADHHTSIKMLK 771 +N L D + + G ++VAV + ++EA + + T++ +LK Sbjct: 1223 VNADLGTWQMDCTHLE--GKI--------IIVAVHVASGFIEAEVIPQETGRQTALFLLK 1272 Query: 772 *VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIK 948 + R+ + +L TD+G++F + + + PY+PQS G VE N +K Sbjct: 1273 --LASRWPIT-HLHTDNGANFTSPSVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLK 1328
>P04584:POL_HV2RO Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| ROD subtype A) (HIV-2) Length = 1464 Score = 40.4 bits (93), Expect = 0.036 Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 1/182 (0%) Frame = +1 Query: 424 EVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMNY 603 E + E + YH+ K L F P L AR+ V SC +CQ+ G Q +N Sbjct: 1177 EPAQEEHEKYHSNV----KELSHKFGIPNLV--ARQIVNSCAQCQQKGEAIHGQ---VNA 1227 Query: 604 SLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA-IPTKNADHHTSIKMLK*VI 780 L D + + G ++VAV + ++EA + + + T++ +LK + Sbjct: 1228 ELGTWQMDCTHLE--GKI--------IIVAVHVASGFIEAEVIPQESGRQTALFLLK--L 1275 Query: 781 FPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQ 960 R+ + +L TD+G++F + + + PY+PQS G VE N +K + Sbjct: 1276 ASRWPIT-HLHTDNGANFTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQIS 1334 Query: 961 KI 966 +I Sbjct: 1335 RI 1336
>Q0R5R2:POL_HTL32 Gag-Pro-Pol polyprotein - Human T-cell leukemia virus 3 (strain| 2026ND) (HTLV-3) Length = 1440 Score = 40.4 bits (93), Expect = 0.036 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = +1 Query: 793 GVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQK-IV 969 G P+ + TD+G+ ++ F++ + H PY+P SSG VE +N +K ++ K ++ Sbjct: 1257 GKPQNINTDNGAAYLSQEFQQFCNSLAIKHSTHIPYNPTSSGLVERTNGILKTLISKYLL 1316 Query: 970 NRSRKNWSSKLDDALW 1017 + + + +LW Sbjct: 1317 DNHHLPLETAVSKSLW 1332
>P31822:POL_FIVT2 Pol polyprotein [Contains: Protease - Feline immunodeficiency virus| (isolate TM2) (FIV) Length = 1124 Score = 40.4 bits (93), Expect = 0.036 Identities = 32/111 (28%), Positives = 54/111 (48%) Frame = +1 Query: 682 VLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKML 861 V V V+ W + IP + AD ++K L +I L TD+G +F + +L Sbjct: 920 VAVHVESGFLWAQIIPQETAD--CTVKALLQLICAHNVTE--LQTDNGPNFKNQKMEGLL 975 Query: 862 AKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVNRSRKNWSSKLDDAL 1014 + H++ P +PQS VE +N +K+ +QK + ++ LD+AL Sbjct: 976 NYMGIKHKLGIPGNPQSQALVENANNTLKVWIQKFLPE-----TTSLDNAL 1021
>P20876:POL_HV2ST Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate ST| subtype A) (HIV-2) Length = 1463 Score = 39.7 bits (91), Expect = 0.062 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 1/182 (0%) Frame = +1 Query: 424 EVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMNY 603 E + E + YH+ K L F P L AR+ V +C +CQ+ G Q +N Sbjct: 1176 EPAQEEHEKYHSNV----KELSHKFGLPKLV--ARQIVNTCTQCQQKGEAIHGQ---VNA 1226 Query: 604 SLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA-IPTKNADHHTSIKMLK*VI 780 L D + + G ++VAV + ++EA + + + T++ +LK + Sbjct: 1227 ELGTWQMDCTHLE--GKI--------IIVAVHVASGFIEAEVIPQESGRQTALFLLK--L 1274 Query: 781 FPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQ 960 R+ + +L TD+G++F + + + PY+PQS G VE N +K + Sbjct: 1275 ASRWPIT-HLHTDNGANFTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQIS 1333 Query: 961 KI 966 +I Sbjct: 1334 RI 1335
>Q89928:POL_HV2EH Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| EHO subtype B) (HIV-2) Length = 1464 Score = 39.3 bits (90), Expect = 0.081 Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 1/149 (0%) Frame = +1 Query: 523 ARKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDY 702 AR+ V SCD+CQ+ G Q +N L D + + ++VAV Sbjct: 1201 ARQIVNSCDKCQQKGEAIHGQ---VNSELGTWQMDCTHLEGKV----------IIVAVHV 1247 Query: 703 VTKWVEA-IPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVN 879 + ++EA + + T++ +LK + R+ + +L TD+G++F + + Sbjct: 1248 ASGFIEAEVIPQETGRQTALFLLK--LASRWPIT-HLHTDNGANFTSQDVKMAAWWIGIE 1304 Query: 880 HRVASPYHPQSSGQVELSNREIKLILQKI 966 PY+P+S G VE N +K + +I Sbjct: 1305 QTFGVPYNPESQGVVEAMNHHLKNQIDRI 1333
>P17757:POL_HV2D1 Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| D194 subtype A) (HIV-2) Length = 1462 Score = 38.5 bits (88), Expect = 0.14 Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 1/149 (0%) Frame = +1 Query: 523 ARKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDY 702 AR+ V +C +CQ+ G Q +N + + D + + G ++VAV Sbjct: 1202 ARQIVNTCAQCQQKGEAIHGQ---VNAEIGVWQMDCTHLE--GKI--------IIVAVHV 1248 Query: 703 VTKWVEA-IPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVN 879 + ++EA + + + T++ +LK + R+ + +L TD+G +F + + + Sbjct: 1249 ASGFIEAEVIPQESGRQTALFLLK--LASRWPIT-HLHTDNGPNFTSQEVKMVAWWIGIE 1305 Query: 880 HRVASPYHPQSSGQVELSNREIKLILQKI 966 PY+PQS G VE N +K + +I Sbjct: 1306 QSFGVPYNPQSQGVVEAMNHHLKNQISRI 1334
>P16901:POL_OMVVS Pol polyprotein [Contains: Protease - Ovine maedi visna related virus| (strain South Africa) (SA-OMVV) (Ovine lentivirus) Length = 1086 Score = 38.1 bits (87), Expect = 0.18 Identities = 22/87 (25%), Positives = 43/87 (49%) Frame = +1 Query: 799 PRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVNRS 978 P+ L +D+G F+ + ++ + H P++PQS VE +++ +K ++K V+ Sbjct: 917 PKSLQSDNGPAFVAEPTQLLMKYLGITHTTGIPWNPQSQALVERTHQTLKNTIEKFVSMF 976 Query: 979 RKNWSSKLDDALWAYGTAYKNPMGMSP 1059 ++ S + AL K +G SP Sbjct: 977 -ASFDSAIAAALITLNIKRKGGLGTSP 1002
>P19505:POL_SIVSP Pol polyprotein [Contains: Protease - Simian immunodeficiency virus| (isolate PBj14/BCL-3) (SIV-sm) (Simian immunodeficiency virus sooty mangabey monkey) Length = 1022 Score = 37.7 bits (86), Expect = 0.24 Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 1/149 (0%) Frame = +1 Query: 523 ARKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDY 702 A++ V +CD+C + G Q +N L D + + G ++VAV Sbjct: 762 AKQIVDTCDKCHQKGEAIHGQ---VNAELGTWQMDCTHLE--GKI--------IIVAVHV 808 Query: 703 VTKWVEA-IPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVN 879 + ++EA + + T++ +LK + R+ + +L TD+G++F + + + Sbjct: 809 ASGFIEAEVIPQETGRQTALFLLK--LASRWPIT-HLHTDNGANFTSQEVKMVAWWAGIE 865 Query: 880 HRVASPYHPQSSGQVELSNREIKLILQKI 966 PY+PQS G VE N +K + +I Sbjct: 866 QTFGVPYNPQSQGVVEAMNHHLKTQIDRI 894
>Q8VHN7:GPR98_MOUSE G-protein coupled receptor 98 precursor - Mus musculus (Mouse)| Length = 6298 Score = 37.7 bits (86), Expect = 0.24 Identities = 31/99 (31%), Positives = 46/99 (46%) Frame = -1 Query: 532 TYGHP*REWANRNLIAIPCGQFYLQRGILRRLRMTLLQDLSLFMFSHTSNNTIYSFLIKV 353 TYGH ++++R A+P G Y+ RG S F H N + I V Sbjct: 4425 TYGHVSADFSSRGFSAVPGG--YVLRG-------------SSVTFQHGQNLS----FINV 4465 Query: 352 RIIPKVVSQIKEEFLLLLIGETGWYVFGYDIVCIIGIPR 236 II S+ +++F +LLIG TG + G +V I I + Sbjct: 4466 SIIDDNGSEFEKQFEILLIGATGGAILGRHLVSKITIAK 4504
>P35956:POL_VILVK Pol polyprotein [Contains: Protease - Maedi visna virus (strain| KV1772) (MVV) (Visna lentivirus) Length = 1101 Score = 37.4 bits (85), Expect = 0.31 Identities = 22/87 (25%), Positives = 41/87 (47%) Frame = +1 Query: 799 PRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVNRS 978 P+ L +D+G F+ + ++ + H P++PQS VE +++ +K L+K++ Sbjct: 932 PKSLQSDNGPAFVAESTQLLMKYLGIEHTTGIPWNPQSQALVERTHQTLKNTLEKLIPMF 991 Query: 979 RKNWSSKLDDALWAYGTAYKNPMGMSP 1059 + S L L K +G SP Sbjct: 992 NA-FESALAGTLITLNIKRKGGLGTSP 1017
>P23427:POL_VILV2 Pol polyprotein [Contains: Protease - Maedi visna virus (strain 1514| / clone LV1-1KS2) (MVV) (Visna lentivirus) Length = 1105 Score = 37.4 bits (85), Expect = 0.31 Identities = 22/87 (25%), Positives = 41/87 (47%) Frame = +1 Query: 799 PRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVNRS 978 P+ L +D+G F+ + ++ + H P++PQS VE +++ +K L+K++ Sbjct: 936 PKSLQSDNGPAFVAESTQLLMKYLGIEHTTGIPWNPQSQALVERTHQTLKNTLEKLIPMF 995 Query: 979 RKNWSSKLDDALWAYGTAYKNPMGMSP 1059 + S L L K +G SP Sbjct: 996 NA-FESALAGTLITLNIKRKGGLGTSP 1021
>P23426:POL_VILV1 Pol polyprotein [Contains: Protease - Maedi visna virus (strain 1514| / clone LV1-1KS1) (MVV) (Visna lentivirus) Length = 1105 Score = 37.4 bits (85), Expect = 0.31 Identities = 22/87 (25%), Positives = 41/87 (47%) Frame = +1 Query: 799 PRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVNRS 978 P+ L +D+G F+ + ++ + H P++PQS VE +++ +K L+K++ Sbjct: 936 PKSLQSDNGPAFVAESTQLLMKYLGIEHTTGIPWNPQSQALVERTHQTLKNTLEKLIPMF 995 Query: 979 RKNWSSKLDDALWAYGTAYKNPMGMSP 1059 + S L L K +G SP Sbjct: 996 NA-FESALAGTLITLNIKRKGGLGTSP 1021
>P03370:POL_VILV Pol polyprotein [Contains: Protease - Maedi visna virus (strain 1514)| (MVV) (Visna lentivirus) Length = 1105 Score = 37.4 bits (85), Expect = 0.31 Identities = 22/87 (25%), Positives = 41/87 (47%) Frame = +1 Query: 799 PRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVNRS 978 P+ L +D+G F+ + ++ + H P++PQS VE +++ +K L+K++ Sbjct: 936 PKSLQSDNGPAFVAESTQLLMKYLGIEHTTGIPWNPQSQALVERTHQTLKNTLEKLIPMF 995 Query: 979 RKNWSSKLDDALWAYGTAYKNPMGMSP 1059 + S L L K +G SP Sbjct: 996 NA-FESALAGTLITLNIKRKGGLGTSP 1021
>P03364:POL_SMRVH Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -| Squirrel monkey retrovirus (SMRV-H) (SMRV-HLB) Length = 888 Score = 37.4 bits (85), Expect = 0.31 Identities = 17/58 (29%), Positives = 29/58 (50%) Frame = +1 Query: 793 GVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI 966 G P + TD+G + F+ K + H PY+PQ G VE +++ +K L ++ Sbjct: 711 GKPHTIKTDNGPGYTGKNFQDFCQKLQIKHVTGIPYNPQGQGVVERAHQTLKNALNRL 768
>P12502:POL_SIVS4 Pol polyprotein [Contains: Protease - Simian immunodeficiency virus| (isolate F236/smH4) (SIV-sm) (Simian immunodeficiency virus sooty mangabey monkey) Length = 1019 Score = 37.4 bits (85), Expect = 0.31 Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 1/149 (0%) Frame = +1 Query: 523 ARKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDY 702 A++ V +CD+C + G Q +N L D + + G ++VAV Sbjct: 759 AKQIVDTCDKCHQKGEAIHGQ---VNAELGTWQMDCTHLE--GKI--------IIVAVHV 805 Query: 703 VTKWVEA-IPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVN 879 + ++EA + + T++ +LK + R+ + +L TD+G++F + + + Sbjct: 806 ASGFIEAEVIPQETGRQTALFLLK--LAGRWPIT-HLHTDNGANFTSQEVKMVAWWAGIE 862 Query: 880 HRVASPYHPQSSGQVELSNREIKLILQKI 966 PY+PQS G VE N +K + +I Sbjct: 863 QTFGVPYNPQSQGVVEAMNHHLKTQIDRI 891
>P75440:Y338_MYCPN Uncharacterized protein MG242 homolog - Mycoplasma pneumoniae| Length = 632 Score = 37.0 bits (84), Expect = 0.40 Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 4/151 (2%) Frame = +1 Query: 1210 AYENAKLFKEKVKRWHDKRIQKREFNVGDYVLLYNSRLR--FFAGRLLSKWEGPYVIEEV 1383 A+EN + E +R +D I E N Y+ Y + +R FF G + ++ + Sbjct: 109 AFENNLINNEFAERRYDYLI---EINKHSYLRKYVNAIRISFFLDLRAQILSGSFTLDVI 165 Query: 1384 YRSGAIKINNTEGNFPRVVNGQRIKHYISGT--PINVETYIINVVTPEEYIRDVHQPVPD 1557 + ++ N E F + IKH+IS PI++ ++I D ++ Sbjct: 166 NKQ--LEHQNKEELFQAIYLRSLIKHFISNQLYPISLNSFIFG---------DKNRENKT 214 Query: 1558 PENEEVSVSVRNWTLMLFQ*EISFVLEFLEK 1650 EN+++SV NW + F FV + E+ Sbjct: 215 VENDKLSVLKNNWNQIFFSKYFDFVAKNKEE 245
>O92956:POL_RSVSB Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -| Rous sarcoma virus (strain Schmidt-Ruppin B) (RSV-SRB) Length = 895 Score = 37.0 bits (84), Expect = 0.40 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Frame = +1 Query: 739 ADHH--TSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQS 912 A HH T+I +L G P+ + TD+GS F R+ LA++ + H P + Q Sbjct: 673 AQHHWATAIAVL--------GRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQG 724 Query: 913 SGQVELSNREIK 948 VE +NR +K Sbjct: 725 QAMVERANRLLK 736
>Q04095:POL_RSVSA Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -| Avian leukosis virus RSA (RSV-SRA) (Rous sarcoma virus (strain Schmidt-Ruppin A)) Length = 895 Score = 37.0 bits (84), Expect = 0.40 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Frame = +1 Query: 739 ADHH--TSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQS 912 A HH T+I +L G P+ + TD+GS F R+ LA++ + H P + Q Sbjct: 673 AQHHWATAIAVL--------GRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQG 724 Query: 913 SGQVELSNREIK 948 VE +NR +K Sbjct: 725 QAMVERANRLLK 736
>Q7SQ98:POL_ALV Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -| Avian leukosis virus (ALV) Length = 895 Score = 37.0 bits (84), Expect = 0.40 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Frame = +1 Query: 739 ADHH--TSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQS 912 A HH T+I +L G P+ + TD+GS F R+ LA++ + H P + Q Sbjct: 673 AQHHWATAIAVL--------GRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQG 724 Query: 913 SGQVELSNREIK 948 VE +NR +K Sbjct: 725 QAMVERANRLLK 736
>P34457:YMD3_CAEEL Uncharacterized protein F54H12.3 - Caenorhabditis elegans| Length = 286 Score = 36.6 bits (83), Expect = 0.53 Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 2/186 (1%) Frame = +1 Query: 664 SNGYTHVLVAVDYVTKWVEAIPTKNADHHTSIKMLK*VIFPRFGV-PRYLMTDDGSHFIH 840 ++G T +LV +D ++ + K+ + L+ V F GV P + +DDG F + Sbjct: 8 NDGVTFLLVCIDIYSRRLFVKTLKSKKGQEVAEALQDV-FKEIGVTPMTIYSDDGKEFYN 66 Query: 841 GVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQK-IVNRSRKNWSSKLDDALW 1017 +++LAK VN + SP VE +NR +K L K + + + + L + Sbjct: 67 SHVKELLAKNFVN--LFSPKSEIKCAIVERANRTLKTRLAKYMTQKYNRRYVDVLQQVVN 124 Query: 1018 AYGTAYKNPMGMSPYKMVYGKACYFPLELEHKAYWAIKELNFDFKLAGEKWLFDISSLDE 1197 + +G P + G F + + + ++A ++ FD Sbjct: 125 GINNSVNRGIGKKPVDVERGD---FSTPMPVDSVKIKFRVGDHVRIAAKRGQFDKGYEQG 181 Query: 1198 WRTQAY 1215 W T+ Y Sbjct: 182 WTTEVY 187
>P05962:POL_HV2NZ Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| NIH-Z subtype A) (HIV-2) Length = 1461 Score = 36.6 bits (83), Expect = 0.53 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Frame = +1 Query: 682 VLVAVDYVTKWVEA-IPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKM 858 ++VAV + ++EA + + + T++ +LK + R+ + +L TD+G++F + + Sbjct: 1241 IIVAVHVASGFIEAEVIPQESGRQTALFLLK--LASRWPIT-HLHTDNGANFTSQEVKMV 1297 Query: 859 LAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI 966 + PY+PQS G VE N +K + +I Sbjct: 1298 AWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQIDRI 1333
>Q74120:POL_HV2KR Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate KR| subtype A) (HIV-2) Length = 1463 Score = 36.6 bits (83), Expect = 0.53 Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 1/182 (0%) Frame = +1 Query: 424 EVSFEAYGGYHAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMNY 603 E + E + YH+ K L F P L AR+ V +C +CQ+ G Q ++ Sbjct: 1176 EPAQEEHEKYHSNV----KELSHKFGLPKLV--ARQIVNTCAQCQQKGEAIHGQ---VDA 1226 Query: 604 SLVIKPFDVSGFDYMGPFPSSNGYTHVLVAVDYVTKWVEA-IPTKNADHHTSIKMLK*VI 780 L D + + G ++VAV + ++EA + + T++ +LK + Sbjct: 1227 ELGTWQMDCTHLE--GKI--------IIVAVHVASGFIEAEVIPQETGRQTALFLLK--L 1274 Query: 781 FPRFGVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQ 960 R+ + +L TD+G++F + + + PY+PQS G VE N +K + Sbjct: 1275 ASRWPIT-HLHTDNGANFTSQEVKMVAWWTGIEQSFGVPYNPQSQGVVEAMNHHLKNQIS 1333 Query: 961 KI 966 +I Sbjct: 1334 RI 1335
>P24107:POL_HV2CA Gag-Pol polyprotein - Human immunodeficiency virus type 2 (isolate| CAM2 subtype A) (HIV-2) Length = 1462 Score = 36.6 bits (83), Expect = 0.53 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Frame = +1 Query: 682 VLVAVDYVTKWVEA-IPTKNADHHTSIKMLK*VIFPRFGVPRYLMTDDGSHFIHGVFRKM 858 ++VAV + ++EA + + + T++ +LK + R+ + +L TD+G++F + + Sbjct: 1242 IIVAVHVASGFIEAEVIPQESGRQTALFLLK--LASRWPIT-HLHTDNGANFTSQEVKMV 1298 Query: 859 LAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKI 966 + PY+PQS G VE N +K + +I Sbjct: 1299 AWWVGIEQTFGVPYNPQSQGVVEAMNHHLKNQISRI 1334
>P19560:POL_BIV29 Gag-Pol polyprotein - Bovine immunodeficiency virus (strain R29)| (BIV) (Bovine immunodeficiency-like virus) Length = 1475 Score = 36.6 bits (83), Expect = 0.53 Identities = 62/257 (24%), Positives = 96/257 (37%), Gaps = 7/257 (2%) Frame = +1 Query: 454 HAGDRTAHKVLQSGFYWPTLFKDARKFVLSCDECQRIGNITKRQEMPMNYSLVIKPFDVS 633 H T+ +L F+ P + A++ V C EC+R R P Sbjct: 1208 HERWHTSPDILVRQFHLPK--RIAKEIVARCQECKRTTTSPVRGTNPR------------ 1253 Query: 634 GFDYMGPFPSSNGYTH-----VLVAVDYVTKWVEA--IPTKNADHHTSIKMLK*VIFPRF 792 G F TH + VAV+ + VEA IP + A + + + R+ Sbjct: 1254 -----GRFLWQMDNTHWNKTIIWVAVETNSGLVEAQVIPEETA---LQVALCILQLIQRY 1305 Query: 793 GVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVN 972 V +L +D+G F + + PY+PQS G VE ++R++K L Sbjct: 1306 TV-LHLHSDNGPCFTAHRIENLCKYLGITKTTGIPYNPQSQGVVERAHRDLKDRL-AAYQ 1363 Query: 973 RSRKNWSSKLDDALWAYGTAYKNPMGMSPYKMVYGKACYFPLELEHKAYWAIKELNFDFK 1152 + + L AL + G +PY++ LE EH Y E F K Sbjct: 1364 GDCETVEAALSLALVSLNKKRGGIGGHTPYEIY--------LESEHTKYQDQLEQQFS-K 1414 Query: 1153 LAGEKWLFDISSLDEWR 1203 EKW + + EW+ Sbjct: 1415 QKIEKWCYVRNRRKEWK 1431
>P03354:POL_RSVP Pol polyprotein [Contains: Reverse transcriptase/ribonuclease H -| Rous sarcoma virus (strain Prague C) (RSV-PrC) Length = 895 Score = 36.2 bits (82), Expect = 0.69 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = +1 Query: 793 GVPRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIK 948 G P+ + TD+GS F R+ LA++ + H P + Q VE +NR +K Sbjct: 685 GRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLK 736
>P16088:POL_FIVPE Pol polyprotein [Contains: Protease - Feline immunodeficiency virus| (isolate Petaluma) (FIV) Length = 1124 Score = 35.8 bits (81), Expect = 0.90 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%) Frame = +1 Query: 808 LMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVNRSRKN 987 L TD+G +F + +L V H+ P +PQS VE N +K+ +QK + Sbjct: 958 LQTDNGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPE---- 1013 Query: 988 WSSKLDDA--LWAYGTAYKNP---MGMSPYKMV 1071 ++ LD+A L + +K GM+PY+++ Sbjct: 1014 -TTSLDNALSLAVHSLNFKRRGRIGGMAPYELL 1045
>Q04617:COLI1_ONCMY Corticotropin-lipotropin A precursor - Oncorhynchus mykiss (Rainbow| trout) (Salmo gairdneri) Length = 253 Score = 34.7 bits (78), Expect = 2.0 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 2/108 (1%) Frame = +2 Query: 104 WEQPAGAGRHPARLYVFGVPGDHSPDDDSFPDEQLNVIRASHSA--PWYADYANYIVAKY 277 W +P G R P ++Y GV + S ++FP E + + A A A+ Sbjct: 112 WGKPVGRKRRPVKVYTNGVEEESS---EAFPSEMRRELGTDDAVYPSLEAGTAEGGEAEG 168 Query: 278 IPPSFTYQQKKKFFFDLRHYFWDDPHLYKEGVDGVIRRVTEHEQGQIL 421 + F+ Q+KK + + H+ W P K G ++ E Q +L Sbjct: 169 MEGVFSLQEKKDGSYKMNHFRWSGPPASKR-YGGFMKSWDERSQKPLL 215
>Q9PTD7:CING_XENLA Cingulin - Xenopus laevis (African clawed frog)| Length = 1360 Score = 34.3 bits (77), Expect = 2.6 Identities = 37/118 (31%), Positives = 49/118 (41%), Gaps = 3/118 (2%) Frame = +3 Query: 1902 MSRESVGENDLHQVHEEVDADLKRVEVREATDQAKEKTQAREEVQPMFNIEDVEGVDFLQ 2081 MS ES G L Q E + R E+ EA QAKEKT E Q FN +Q Sbjct: 1023 MSNESRGSLQLLQTQLEEYREKSRKEIGEAQKQAKEKTAEAERHQ--FNSSR------MQ 1074 Query: 2082 PFLHVLSPSLIELLRFCETTRARNISLSREVVLLENHVTDLKGI---NQRLIALLESK 2246 + L +L EL ET +S+ + LE + K + R + +LE K Sbjct: 1075 EEVQKLKLALQELQVEKETVELDKQMISQRLQSLEQDIESKKRVQDDRSRQVKVLEDK 1132
>Q8NBS9:TXND5_HUMAN Thioredoxin domain-containing protein 5 precursor - Homo sapiens| (Human) Length = 432 Score = 33.9 bits (76), Expect = 3.4 Identities = 15/22 (68%), Positives = 18/22 (81%) Frame = -1 Query: 133 VPARPGRLLPFRSRPAPLTSRL 68 +PARPGRLLP +RPA LT+ L Sbjct: 1 MPARPGRLLPLLARPAALTALL 22
>P19028:POL_FIVSD Pol polyprotein [Contains: Protease - Feline immunodeficiency virus| (strain San Diego) (FIV) Length = 1124 Score = 33.1 bits (74), Expect = 5.8 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +1 Query: 808 LMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVNRSRKN 987 L TD+G +F + +L V H+ P +PQS VE N+ +K+ + K + Sbjct: 958 LQTDNGPNFKNQKMEGVLNYMGVKHKFGIPGNPQSQALVENVNQTLKVWVHKFLPE---- 1013 Query: 988 WSSKLDDAL 1014 ++ LD+AL Sbjct: 1014 -TTSLDNAL 1021
>P92517:M760_ARATH Uncharacterized mitochondrial protein AtMg00760 - Arabidopsis| thaliana (Mouse-ear cress) Length = 109 Score = 32.7 bits (73), Expect = 7.6 Identities = 18/40 (45%), Positives = 23/40 (57%) Frame = -3 Query: 1397 APERYTSSIT*GPSHLERSLPAKNLKRELYNRT*SPTLNS 1278 AP +TS + G HL+ + P NL EL + T S TLNS Sbjct: 64 APYGFTSFMRKGKKHLDLNFPGNNLSLELRSSTWSFTLNS 103
>Q58042:Y625_METJA Uncharacterized ATP-binding protein MJ0625 - Methanococcus jannaschii| Length = 336 Score = 32.7 bits (73), Expect = 7.6 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 5/80 (6%) Frame = +1 Query: 1165 KWLFDISSLDEWRTQAYENAKLFKEKVKRWHDKRIQKRE-----FNVGDYVLLYNSRLRF 1329 K+L D + LDE + Y+ FK+K+K ++K ++K E F + + +L Y+ Sbjct: 262 KYLIDTTDLDE--EELYKVLSKFKDKIKISYEKEVKKEEMKYFKFLIKNEILFYDVINGI 319 Query: 1330 FAGRLLSKWEGPYVIEEVYR 1389 + KW Y I E+ + Sbjct: 320 IKPTSVKKW---YAIREILK 336
>P33459:POL_CAEVC Pol polyprotein [Contains: Protease - Caprine arthritis encephalitis| virus (strain Cork) (CAEV-Co) Length = 1109 Score = 32.3 bits (72), Expect = 9.9 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Frame = +1 Query: 799 PRYLMTDDGSHFIHGVFRKMLAKYDVNHRVASPYHPQSSGQVELSNREIKLILQKIVNRS 978 P L +D+G F + ++ V H P++PQS VE +++ +K L+K Sbjct: 941 PESLQSDNGPAFAAEPTQLLMQYLGVKHTTGIPWNPQSQAIVERAHQLLKSTLKKF-QPQ 999 Query: 979 RKNWSSKLDDALWAYGTAYKNPMGMSPYKM-VYGK 1080 S + AL A K +G SP + +Y K Sbjct: 1000 FVAVESAIAAALVAINIKRKGGLGTSPMDIFIYNK 1034 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 443,356,302 Number of extensions: 9941346 Number of successful extensions: 28170 Number of sequences better than 10.0: 137 Number of HSP's gapped: 28085 Number of HSP's successfully gapped: 137 Length of query: 844 Length of database: 100,686,439 Length adjustment: 122 Effective length of query: 722 Effective length of database: 67,222,449 Effective search space: 48534608178 Effective search space used: 48534608178 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
