ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf76j08 |
|---|---|
| Clone Library Name | barley_pub |
>Q10124:PQE1_CAEEL Putative RNA exonuclease pqe-1 - Caenorhabditis elegans| Length = 1647 Score = 42.7 bits (99), Expect = 0.021 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 9/111 (8%) Frame = -3 Query: 358 RGTQAGDGTKEPTRPDPTDGVRETDLGSHGIRR-----GKRNRWNPPSIDRSDR----YP 206 R T G + T P+ RET G+ +RR G+++R P + Y Sbjct: 933 RDTPTGSRSMRSTSPNDRRKSRETPPGNRSMRRTSPSDGRKSRDTPTASSSMSSSTLSYC 992 Query: 205 RKRAESPASTGSKAGEERSKNQRRFETNRDEGRERKRKETVAETRGGDSGG 53 +K E+P S ++++K QR +T R+E RERKR + E ++ G Sbjct: 993 KKSKETPMSYEEIEQQKKAKRQRNCKT-REENRERKRLAQLEELESSETTG 1042
>Q7NY13:IF2_CHRVO Translation initiation factor IF-2 - Chromobacterium violaceum| Length = 964 Score = 42.0 bits (97), Expect = 0.036 Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 8/122 (6%) Frame = -3 Query: 397 TGDSR*IQIF*NHRGTQAGDGTKEPTRPDPTDGVRETDLGSHGIRRGKRNRWNPPSIDRS 218 +GD+R + N AG G + P G R G G R G NR P Sbjct: 239 SGDNRGPRGNDNRGPRPAGAGDRGPRPGGDNRGPRPAGAGDRGPRPGGDNR-GPRPAGAG 297 Query: 217 DRYPR--------KRAESPASTGSKAGEERSKNQRRFETNRDEGRERKRKETVAETRGGD 62 DR PR + +PA GS+ G+ + +R ++ N+ GR K T+GGD Sbjct: 298 DRGPRPAPAAAAPSQPPAPAPGGSRPGKGKKGGERSWDDNKKGGRGLK-------TKGGD 350 Query: 61 SG 56 +G Sbjct: 351 AG 352
>Q9CR92:CCD96_MOUSE Coiled-coil domain-containing protein 96 - Mus musculus (Mouse)| Length = 584 Score = 38.5 bits (88), Expect = 0.40 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%) Frame = -1 Query: 345 QATEPRNRPDPTRPMEFEKLTSGRTESDAGSEIDGIPHRSIDRIATPGSGPNPLRAQEAK 166 Q EP+ P+PT+ E E T ++S + +GI + ++ +PG+ A + Sbjct: 40 QEPEPKPEPEPTQGREPESETQPVSDSSKAKDSEGIDYAHVEVPESPGAAETAGEAVSRE 99 Query: 165 P---ARSGAKIKGDSKRIEMRDEKE 100 P ++ K K +SK E +DE E Sbjct: 100 PESLPQTQPKTKPESKEPEDKDEDE 124
>Q62376:RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa - Mus musculus (Mouse)| Length = 448 Score = 38.1 bits (87), Expect = 0.52 Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 11/116 (9%) Frame = -3 Query: 364 NHRGTQAGDGTKEPTRPDPT-------DGVRETDLGSHGIRRGK-RNRWNPPSIDRSDRY 209 N R + D ++ RP P+ D RE + R K R R S DR Sbjct: 207 NIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDR---- 262 Query: 208 PRKRAESPASTGSKAGEERSKNQ---RRFETNRDEGRERKRKETVAETRGGDSGGG 50 R+R+ S + ERSK++ R+ ++R R R+ +E E RGG GGG Sbjct: 263 -RRRSRSRDKDERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGGGG 317
>Q1RMR2:RU17_BOVIN U1 small nuclear ribonucleoprotein 70 kDa - Bos taurus (Bovine)| Length = 439 Score = 38.1 bits (87), Expect = 0.52 Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 11/116 (9%) Frame = -3 Query: 364 NHRGTQAGDGTKEPTRPDPT-------DGVRETDLGSHGIRRGK-RNRWNPPSIDRSDRY 209 N R + D ++ RP P+ D RE + R K R R S DR Sbjct: 207 NIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDR---- 262 Query: 208 PRKRAESPASTGSKAGEERSKNQ---RRFETNRDEGRERKRKETVAETRGGDSGGG 50 R+R+ S + ERSK++ R+ ++R R R+ +E E RGG GGG Sbjct: 263 -RRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGGGG 317
>Q705F3:VE2_BPV6 Regulatory protein E2 - Bovine papillomavirus type 6| Length = 435 Score = 37.4 bits (85), Expect = 0.88 Identities = 28/75 (37%), Positives = 36/75 (48%) Frame = -3 Query: 277 SHGIRRGKRNRWNPPSIDRSDRYPRKRAESPASTGSKAGEERSKNQRRFETNRDEGRERK 98 SH RRG R P S+ RS R R+ SP+ GS A R + + TN+ GR+ Sbjct: 244 SHSSRRGSR----PQSLSRSRSRSRSRSRSPS--GSHA---RQRAPQDSGTNKSPGRQGG 294 Query: 97 RKETVAETRGGDSGG 53 R+ RGG GG Sbjct: 295 RRGDGGGGRGGGGGG 309
>P72186:PLS_PYRFU Pyrolysin precursor - Pyrococcus furiosus| Length = 1398 Score = 36.6 bits (83), Expect = 1.5 Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Frame = -1 Query: 2574 ILDNQQTIRIRILGRIIETVEKNELNRILIIQTQVGQQEDSTSFSLSQVIPISDNQQQIQ 2395 IL NQQ + + + + K + N +LII+T+ G+ E++ + I D + + Sbjct: 40 ILPNQQVVTKEVSQAALNAIMKGQPNMVLIIKTKEGKLEEAKTELEKLGAEILDENRVLN 99 Query: 2394 IKVVRLKLNESKANEVKF-RGII*TWISSSRLMSDPKLQSNTKHRL*PYQKPNLHP 2230 + +V++K K E+ + + W++ +S P ++ + K + +P+L P Sbjct: 100 MLLVKIK--PEKVKELNYISSLEKAWLNREVKLSPPIVEKDVKTK-----EPSLEP 148
>P54705:SNWA_DICDI Protein snwA - Dictyostelium discoideum (Slime mold)| Length = 685 Score = 36.2 bits (82), Expect = 2.0 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Frame = -3 Query: 265 RRGKRNRWNPPSIDRSDRYPRKRAESPA---STGSKAGEERSKNQRRFETNRDEGRERKR 95 R + NR S DR DRY ++R++S + S S + +ER + +R+ + RD+ R K+ Sbjct: 470 RDNRDNRRRDDSNDR-DRYSKRRSDSDSDSDSDSSDSEDERVRRERKEKLERDKIRMEKK 528 Query: 94 KETVAETRGGDSG 56 +E E R SG Sbjct: 529 RELEREYRLEASG 541
>Q80910:VE2_HPV38 Regulatory protein E2 - Human papillomavirus type 38| Length = 441 Score = 35.8 bits (81), Expect = 2.6 Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 4/102 (3%) Frame = -3 Query: 343 GDGTKEPTR---PDPTDGVRETDLGSHGIRRGKRNRWNPPSIDRSDRYPRKRAESPASTG 173 GD T +R P+P+ V S RR R +P + R R+R +TG Sbjct: 206 GDSTDSASRAALPEPSTSVSPERPPSQTARRYGRKASSPSTTSR-----RQRKGQRETTG 260 Query: 172 S-KAGEERSKNQRRFETNRDEGRERKRKETVAETRGGDSGGG 50 + + + RS+++ RD R R +V+ TRG GGG Sbjct: 261 TQRRRKSRSRSRSTNRGGRDTRRSSSRGSSVSPTRGRRRGGG 302
>Q66HH4:HERP2_RAT Homocysteine-responsive endoplasmic reticulum-resident| ubiquitin-like domain member 2 protein - Rattus norvegicus (Rat) Length = 401 Score = 35.8 bits (81), Expect = 2.6 Identities = 26/92 (28%), Positives = 40/92 (43%) Frame = -1 Query: 543 HLACVSKMRAHIPKAGSAGEAVRIHEGLKESTSC*LIHTRSGT*NRKTARATAVESKSSE 364 HL C S+ PK+ + GE+ H L ST+ H+ S T + + V S Sbjct: 83 HLVCASRSPPSSPKSSTDGES---HGALASSTNSNSDHSDSTTPSPSQESLSLVAGSS-- 137 Query: 363 ITEGRRQATEPRNRPDPTRPMEFEKLTSGRTE 268 EG R T P+ + DP + +F + G + Sbjct: 138 --EGLRHRTLPQAQTDPAQSHQFPYVIQGNVD 167
>Q9UQ35:SRRM2_HUMAN Serine/arginine repetitive matrix protein 2 - Homo sapiens (Human)| Length = 2752 Score = 35.4 bits (80), Expect = 3.4 Identities = 35/127 (27%), Positives = 46/127 (36%), Gaps = 14/127 (11%) Frame = -2 Query: 422 REPRTGRPHGRQPLNPNLLKS----------PRDAGRRRNQGTDPTR---PDRWSSRN*P 282 R R GR H R P +S R RRR++ PTR R +R Sbjct: 555 RSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGR 614 Query: 281 RVARNQTREAKSMESPIDRSIGSLPPEAGRIPCEHRKQSRRG-AEQKSKAIRNESR*GTR 105 +R R SP+ R S P R +RRG + ++ A R SR T Sbjct: 615 SRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTP 674 Query: 104 KKEEGNS 84 + G S Sbjct: 675 ARRSGRS 681
>Q13523:PRP4B_HUMAN Serine/threonine-protein kinase PRP4 homolog - Homo sapiens (Human)| Length = 1007 Score = 31.6 bits (70), Expect(2) = 3.6 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%) Frame = -3 Query: 250 NRWNPPSIDRSDRYP-RKRAESPASTGSKAGEERSKNQRRFETNRDEG-RERKRKETVAE 77 NRW+P R R P R+R+ SP S++ RS++ RR RD G R R R + Sbjct: 434 NRWSPTR--RRSRSPIRRRSRSPLRR-SRSPRRRSRSPRR----RDRGRRSRSRLRRRSR 486 Query: 76 TRGG 65 +RGG Sbjct: 487 SRGG 490 Score = 22.3 bits (46), Expect(2) = 3.6 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Frame = -2 Query: 404 RPHGRQPLNPNLLKSPRDAGRRRNQGTDPTRPDRWSSRN-*PRVARNQTREAKS 246 R GR P +L PRD RR P DR S ++ P + R AKS Sbjct: 344 RRPGRSPKRRSLSPKPRDKSRR---SRSPLLNDRRSKQSKSPSRTLSPGRRAKS 394
>Q9Z2E1:MBD2_MOUSE Methyl-CpG-binding domain protein 2 - Mus musculus (Mouse)| Length = 414 Score = 34.7 bits (78), Expect = 5.7 Identities = 32/101 (31%), Positives = 39/101 (38%) Frame = -3 Query: 349 QAGDGTKEPTRPDPTDGVRETDLGSHGIRRGKRNRWNPPSIDRSDRYPRKRAESPASTGS 170 Q G G+ P P GVR G+ G RG R RW + A G Sbjct: 34 QGGQGSA--LAPSPVSGVRRE--GARGGGRG-RGRW----------------KQAARGGG 72 Query: 169 KAGEERSKNQRRFETNRDEGRERKRKETVAETRGGDSGGGA 47 G R + + R R GR R R ++ GGD GGGA Sbjct: 73 VCGRGRGRGRGRGR-GRGRGRGRGRPQSGGSGLGGDGGGGA 112
>P08173:ACM4_HUMAN Muscarinic acetylcholine receptor M4 - Homo sapiens (Human)| Length = 479 Score = 34.7 bits (78), Expect = 5.7 Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 5/140 (3%) Frame = -1 Query: 543 HLACVSKMRAHIPKAGSAGEAVRIHEGLKESTSC*LIHTRSGT*NRKTARATAVESKSSE 364 H++ S+ R H + EG KE + L +S + + E+ E Sbjct: 217 HISLASRSRVHKHRP----------EGPKEKKAKTLAFLKSPLMKQSVKKPPPGEAAREE 266 Query: 363 ITEGRRQATEPRNRPDPTRPMEFEKLTSGRTESDAGSEIDGIPHR-----SIDRIATPGS 199 + G+ + P P P RP+ +K TS ES +GS R S TP Sbjct: 267 LRNGKLEEAPPPALPPPPRPVA-DKDTS--NESSSGSATQNTKERPATELSTTEATTPAM 323 Query: 198 GPNPLRAQEAKPARSGAKIK 139 PL+ + PA +KI+ Sbjct: 324 PAPPLQPRALNPASRWSKIQ 343
>P69831:PTKC_ECOLI Galactitol permease IIC component - Escherichia coli| Length = 451 Score = 33.9 bits (76), Expect = 9.8 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 5/105 (4%) Frame = +1 Query: 4150 LLQM*EGDGCGVMNRRVEVCFTVCGYFDWLWLNAL*EARILCAEVF-----VSD*SWIGS 4314 +L M GD C + + F G L L+++ A AE F V D W GS Sbjct: 28 ILGMKAGD-CFKAGLHIGIGFVGIGLVIGLMLDSIGPAAKAMAENFDLNLHVVDVGWPGS 86 Query: 4315 LTMEWGSENLQTVFGLLTLLNLVSLFARSNLAYNISDINCWFSSY 4449 M W S+ + L+N+ L R N+ N W ++ Sbjct: 87 SPMTWASQIALVAIPIAILVNVAMLLTRMTRVVNVDIWNIWHMTF 131
>P69832:PTKC_ECO57 Galactitol permease IIC component - Escherichia coli O157:H7| Length = 451 Score = 33.9 bits (76), Expect = 9.8 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 5/105 (4%) Frame = +1 Query: 4150 LLQM*EGDGCGVMNRRVEVCFTVCGYFDWLWLNAL*EARILCAEVF-----VSD*SWIGS 4314 +L M GD C + + F G L L+++ A AE F V D W GS Sbjct: 28 ILGMKAGD-CFKAGLHIGIGFVGIGLVIGLMLDSIGPAAKAMAENFDLNLHVVDVGWPGS 86 Query: 4315 LTMEWGSENLQTVFGLLTLLNLVSLFARSNLAYNISDINCWFSSY 4449 M W S+ + L+N+ L R N+ N W ++ Sbjct: 87 SPMTWASQIALVAIPIAILVNVAMLLTRMTRVVNVDIWNIWHMTF 131
>Q0P5H8:HERP2_BOVIN Homocysteine-responsive endoplasmic reticulum-resident| ubiquitin-like domain member 2 protein - Bos taurus (Bovine) Length = 406 Score = 33.9 bits (76), Expect = 9.8 Identities = 25/93 (26%), Positives = 41/93 (44%) Frame = -1 Query: 543 HLACVSKMRAHIPKAGSAGEAVRIHEGLKESTSC*LIHTRSGT*NRKTARATAVESKSSE 364 HL C S+ PK+ + E+ HE L +++ + S T + T S SSE Sbjct: 83 HLVCTSRTPPSSPKSSTNRES---HEALASNSNSSSDQSGSSTPSSSQETLTLATSSSSE 139 Query: 363 ITEGRRQATEPRNRPDPTRPMEFEKLTSGRTES 265 G RQ T P+ + DP + + + G ++ Sbjct: 140 ---GLRQRTLPQAQTDPAQSHQVPYVMQGNVDN 169
>Q04602:YDR19_YEAST Uncharacterized transporter YDR119W - Saccharomyces cerevisiae| (Baker's yeast) Length = 768 Score = 27.3 bits (59), Expect(2) = 9.9 Identities = 18/48 (37%), Positives = 23/48 (47%) Frame = +3 Query: 5046 SFSHVALMVIFCFRLPVVADCLAQAMLVTSQNLSSFWFVISLVYFVIS 5189 SF ALM I F L + L ++ LS F+F I L YF +S Sbjct: 531 SFCFAALMCIIPFGTTYFIIVLNLSTLQLAERLSPFFFSIVLGYFSVS 578 Score = 25.0 bits (53), Expect(2) = 9.9 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = +1 Query: 5191 QSMCFRFVGLLGLLFAVYVGISGCSLYLESGQCLVCLHCKISPVLSSSM 5337 Q+ +FV L G +YV + G SL L + +CL P L SSM Sbjct: 586 QNFLLKFV-LSGATLLLYVALMGVSLNLPVWKQYICLSL---PFLGSSM 630 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 1,167,951,052 Number of extensions: 25538578 Number of successful extensions: 55570 Number of sequences better than 10.0: 18 Number of HSP's gapped: 55497 Number of HSP's successfully gapped: 20 Length of query: 2260 Length of database: 100,686,439 Length adjustment: 129 Effective length of query: 2131 Effective length of database: 65,302,384 Effective search space: 139159380304 Effective search space used: 139159380304 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
