>P54797:T10_MOUSE Ser/Thr-rich protein T10 in DGCR region - Mus musculus (Mouse)|
          Length = 276
 Score =  128 bits (322), Expect = 5e-29
 Identities = 88/282 (31%), Positives = 145/282 (51%), Gaps = 16/282 (5%)
 Frame = +2

Query: 98  MCIAAWIWQAHP----QHQXXXXXNRDEFHSRPTKAVGWWGEGSMKILGGRDV---LGGG 256
           MCI  + +   P     ++     NRDEF++RP+K   +WG  S +IL G D+     GG
Sbjct: 1   MCIIFFKFDPRPVSKNAYRLILAANRDEFYNRPSKLADFWGNNS-EILSGLDMEEGKAGG 59

Query: 257 TWMGSTKDGRLAFLTNVLEPDAMPGARTRGDLPLRFLQGNKSPLEVATEVAKEADEYNGF 436
           TW+G +  G+L  LTN L+P   P AR RG+L   FL  +   L    +V+ E   YNGF
Sbjct: 60  TWLGISTRGKLGALTNYLQPRQEPDARGRGELVSHFLTSDMDSLSYLKKVSTEGHLYNGF 119

Query: 437 NLILADLTR---NVMVYVSNRPKGQPATIQLVSPGLHVLSNARLDSPWQKAIRLGKNFRE 607
           N+I ADL+    +V+ Y  NR  G+P  I +++PG + LSNA L++PW+K +  GK    
Sbjct: 120 NIIAADLSTSKGDVVCYYGNR--GEPEPI-VLTPGTYGLSNALLETPWKK-LCFGKQL-- 173

Query: 608 FIRKHGDDEVEAKDIADRLMTDTTRADKDRLPNTGCDPTWEHGLSSI---FIEVQTDEGL 778
           F+      E   KD+    + D    ++ +LP+   +   +  +  I   +  V      
Sbjct: 174 FMEAVEQSEALPKDVLVTQLLDVLNNEEAQLPDPAIEDQGQEYVQPILNKYAAVWCRCAS 233

Query: 779 YGTRSTAVLSVNYDGEASLYEKYL---ESGIWKNHTVHYQIE 895
           YGTR+  ++ V+ +G  +  E+ +   ++  W+ +T  + ++
Sbjct: 234 YGTRTNTIILVDANGHVTFTERSMLDKDTSRWETNTYEFTLQ 275

>Q6ICL3:CV025_HUMAN Uncharacterized protein C22orf25 - Homo sapiens (Human)|
          Length = 276

 Score =  121 bits (303), Expect = 7e-27
 Identities = 89/282 (31%), Positives = 143/282 (50%), Gaps = 16/282 (5%)
 Frame = +2

Query: 98  MCIAAWIWQAHP----QHQXXXXXNRDEFHSRPTKAVGWWGEGSMKILGGRDV---LGGG 256
           MCI  + +   P     ++     NRDEF+SRP+K   +WG  + +IL G D+     GG
Sbjct: 1   MCIIFFKFDPRPVSKNAYRLILAANRDEFYSRPSKLADFWGNNN-EILSGLDMEEGKEGG 59

Query: 257 TWMGSTKDGRLAFLTNVLEPDAMPGARTRGDLPLRFLQGNKSPLEVATEVAKEADEYNGF 436
           TW+G +  G+LA LTN L+P     AR RG+L   FL  +   L    +V+ E   YNGF
Sbjct: 60  TWLGISTRGKLAALTNYLQPQLDWQARGRGELVTHFLTTDVDSLSYLKKVSMEGHLYNGF 119

Query: 437 NLILADLTR---NVMVYVSNRPKGQPATIQLVSPGLHVLSNARLDSPWQKAIRLGKNFRE 607
           NLI ADL+    +V+ Y  NR  G+P  I +++PG + LSNA L++PW+K +  GK    
Sbjct: 120 NLIAADLSTAKGDVICYYGNR--GEPDPI-VLTPGTYGLSNALLETPWRK-LCFGKQL-- 173

Query: 608 FIRKHGDDEVEAKDIADRLMTDTTRADKDRLPNTGCDP---TWEHGLSSIFIEVQTDEGL 778
           F+      +   KD+    + D    ++ +LP+   +     +   + S +  V      
Sbjct: 174 FLEAVERSQALPKDVLIASLLDVLNNEEAQLPDPAIEDQGGEYVQPMLSKYAAVCVRCPG 233

Query: 779 YGTRSTAVLSVNYDGEASLYEKYL---ESGIWKNHTVHYQIE 895
           YGTR+  ++ V+ DG  +  E+ +   +   W+  T  + ++
Sbjct: 234 YGTRTNTIILVDADGHVTFTERSMMDKDLSHWETRTYEFTLQ 275

>Q29RZ5:CV025_BOVIN Uncharacterized protein C22orf25 homolog - Bos taurus (Bovine)|
          Length = 276

 Score =  116 bits (291), Expect = 2e-25
 Identities = 85/282 (30%), Positives = 145/282 (51%), Gaps = 16/282 (5%)
 Frame = +2

Query: 98  MCIAAWIWQAHP----QHQXXXXXNRDEFHSRPTKAVGWWGEGSMKILGGRDV---LGGG 256
           MCI  + +   P     ++     NRDEF+ RP +A  +WG  + ++L G D+     GG
Sbjct: 1   MCIIFFKFDPRPVSKNAYRLILAANRDEFYHRPARAADFWGSNN-EVLSGLDMEEGKEGG 59

Query: 257 TWMGSTKDGRLAFLTNVLEPDAMPGARTRGDLPLRFLQGNKSPLEVATEVAKEADEYNGF 436
           TW+G +  G+LA LTN L+P     AR RG+L  +FL  +   L    +V+ E   YNGF
Sbjct: 60  TWLGISTRGKLAALTNYLQPRLNRNARGRGELVAQFLTSDMDSLSYLKKVSAEGHLYNGF 119

Query: 437 NLILADLTR---NVMVYVSNRPKGQPATIQLVSPGLHVLSNARLDSPWQKAIRLGKNFRE 607
           NLI ADL+    +V+ Y  NR + +P    +++PG + LSNA L++PW+K     + F E
Sbjct: 120 NLIAADLSAEKGDVICYYGNRGEREPV---VLAPGTYGLSNALLETPWRKLCFGKQLFLE 176

Query: 608 FIRKHGDDEVEAKDIADRLMTDTTRADKDRLPNTGCDP---TWEHGLSSIFIEVQTDEGL 778
            + +    E+    +  +L+   +  D+ +LP+   +     +   + S +  V      
Sbjct: 177 AVER--GRELPRDALVAQLLAVLSN-DEAQLPDPAIEAQGREYVRPILSKYAAVCVRCPD 233

Query: 779 YGTRSTAVLSVNYDGEASLYEKYL---ESGIWKNHTVHYQIE 895
           YGTR++ V+ V+ DG  +  E+ +   +   W+  T  ++++
Sbjct: 234 YGTRTSTVILVDADGHVTFTERSMLGSDPTRWETTTHEFRLQ 275

>P53275:YG37_YEAST Uncharacterized protein YGR127W - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 312

 Score = 49.7 bits (117), Expect = 3e-05
 Identities = 68/284 (23%), Positives = 111/284 (39%), Gaps = 43/284 (15%)
 Frame = +2

Query: 98  MCIAAWIWQAHPQHQXXXXXNRDEFHSRPTKAVGWWGEGSM-------KILGGRDVLGGG 256
           MCI     +AHP ++     NRDEF +R T A  W     +       K    + +   G
Sbjct: 1   MCILM-ATRAHPDYELILISNRDEFLARKTHATCWHNNDFILSPYDLAKTSAEKQIF--G 57

Query: 257 TWMGSTKDGRLAFLTNVLEPDAMPG--ARTRGDLPLRFLQGNKSPLEVATEVAKEADEYN 430
           TW G  K+G+LA + N+   +      +R+RG LP  FL  +K+  E      K    Y+
Sbjct: 58  TWSGINKEGKLATILNLKLDNEQNNTKSRSRGLLPFIFLSIHKADFEDWDNYKKFEGHYD 117

Query: 431 G------FNLILADLTR----------NVMVYVSNRPKGQPATIQLVSPGLHVLSNARLD 562
           G      FN    D+ +               +S+  +    +  +VS G    S++   
Sbjct: 118 GLKSTGDFNFFYGDVIKKQYKVIDSLGRTFDVLSSTCRKDLDSYMVVSNGKFYDSSSIPG 177

Query: 563 SPWQKAIRLGKNFREFIRKHGDDEVEAKDIADRLMTDTTRADKDRLPNTGCDPTW----- 727
             W+K +++ ++  E +     +  E K I+         A K  LP+T  +P       
Sbjct: 178 QAWEK-VKVARDSLENLVLENIESDEEKIISSCFQL----ASKSSLPSTISNPDVLQMVD 232

Query: 728 -EHGLSSIFIEVQ------------TDEGLYGTRSTAVLSVNYD 820
               +++I++                D   YGTRS  VL V+ D
Sbjct: 233 PNVTMNTIYVPPLRRPPRDDLGASIPDGDYYGTRSQIVLLVSKD 276

>O59391:LEU2_PYRHO 3-isopropylmalate dehydratase large subunit - Pyrococcus horikoshii|
          Length = 380

 Score = 38.1 bits (87), Expect = 0.083
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
 Frame = +2

Query: 563 SPWQKAIRLGKNFREFIRKHGDDEVEAKDIADRLMTDTTRADKDRL--------PNTGCD 718
           +P  K   L K  REF R+HG   VE K I+ +L+ +   A+K R+        P  G  
Sbjct: 58  APTVKVANLQKEIREFARRHGIPVVEGKGISHQLVVEMGLAEKSRIVVGGDSHTPTLGAL 117

Query: 719 PTWEHGLSSIFIEVQTDEGLYGTRSTAVLSVNYDGEAS 832
             +  G+ +  + V    G    R    ++V ++G+ S
Sbjct: 118 GVFAVGMGATDVAVVLGLGKTWLRVPESVAVIFEGKPS 155

>Q96PE2:ARHGH_HUMAN Rho guanine nucleotide exchange factor 17 - Homo sapiens (Human)|
          Length = 2063

 Score = 34.7 bits (78), Expect = 0.92
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = -1

Query: 321  ASGSSTLVRKASLPSLVLPIHVPPPSTSLPPRIFIE-----PSPHHPT 193
            A  SS  VR AS+P+  +PI VP P TS+ P + +      P+  HPT
Sbjct: 950  ARPSSRHVRHASVPATFMPIVVPEPPTSVGPPVAVPEPIGFPTRAHPT 997

>Q09450:SCOT_CAEEL Probable succinyl-CoA:3-ketoacid-coenzyme A transferase,|
           mitochondrial precursor - Caenorhabditis elegans
          Length = 521

 Score = 33.5 bits (75), Expect = 2.0
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 25/117 (21%)
 Frame = +2

Query: 344 GDLPLRFLQGNKSPLEVATEVAKEADEYNGFNLIL---------------ADLTRNVMVY 478
           G  P+++ +  K  +EVA++ AKE  ++NG N ++               AD   N+   
Sbjct: 165 GGAPIKYSKTEKGKIEVASK-AKETRQFNGINYVMEEAIWGDFALIKAWRADTLGNIQFR 223

Query: 479 VS----NRP--KGQPATI----QLVSPGLHVLSNARLDSPWQKAIRLGKNFREFIRK 619
            +    N P  K    TI    ++V PG+   ++  + S +   + LGKN+++ I +
Sbjct: 224 HAAGNFNNPMCKASKCTIVEVEEIVEPGVIAPNDVHIPSIYCHRLVLGKNYKKPIER 280

>P09029:PURK_ECOLI Phosphoribosylaminoimidazole carboxylase ATPase subunit -|
           Escherichia coli
          Length = 355

 Score = 33.5 bits (75), Expect = 2.0
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -3

Query: 388 QWALVSLQEPEGQVSPSACAGHCIRLEHIGQEGKPAIFGAPHPCSSTEYIPATKNLH 218
           QW L   +  E +  P+ C G CI  + I   G+ ++ GA     ST + P T NLH
Sbjct: 131 QWRL---RANETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLH 184

>A3LQW7:DBP2_PICST ATP-dependent RNA helicase DBP2 - Pichia stipitis (Yeast)|
          Length = 530

 Score = 32.7 bits (73), Expect = 3.5
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
 Frame = +2

Query: 296 LTNVLEPDAMPGARTRGDLP-------LRFLQGNKSPLEVATEVAKEADEYNGFNLIL-A 451
           +T+ L  D  P     GD         LR  +  KSP+ VAT+VA    +  G N ++  
Sbjct: 360 VTSYLRADGWPALAIHGDKQQSERDWVLREFKTGKSPIMVATDVAARGIDVKGINFVINF 419

Query: 452 DLTRNVMVYV 481
           D+  N+  YV
Sbjct: 420 DMPGNIEDYV 429

>Q03209:VP61_NPVAC 61 kDa protein - Autographa californica nuclear polyhedrosis virus|
           (AcMNPV)
          Length = 543

 Score = 32.7 bits (73), Expect = 3.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 357 RGRSPLVRAPGIASGSSTLVRKASLPSLVLPIHVPPPSTSLPPRIFIEPSPHHPT 193
           R R P V  P   +   T+VR+ + P  ++P   PPP + + P I   P P  P+
Sbjct: 151 RSRRPSVVQPAAPAPVPTIVREQTKPEQIIPAAPPPPPSPV-PNIPAPPPPPPPS 204

>Q88B91:HEM3_PSESM Porphobilinogen deaminase - Pseudomonas syringae pv. tomato|
          Length = 313

 Score = 32.0 bits (71), Expect = 6.0
 Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 17/80 (21%)
 Frame = +2

Query: 275 KDGRLAFLTNVLEP-DAMPGARTRG---------------DLPLRFLQGNKSPLEVATEV 406
           +D R AF++N  E  DA+P     G               DL +RFL+GN     V T +
Sbjct: 102 EDPRDAFVSNTFESLDALPAGSIVGTSSLRRQAQLLARRPDLQIRFLRGN-----VNTRL 156

Query: 407 AK-EADEYNGFNLILADLTR 463
           AK +A EYN   L  A L R
Sbjct: 157 AKLDAGEYNAIILAAAGLIR 176

>Q6BY27:DBP2_DEBHA ATP-dependent RNA helicase DBP2 - Debaryomyces hansenii (Yeast)|
           (Torulaspora hansenii)
          Length = 536

 Score = 32.0 bits (71), Expect = 6.0
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
 Frame = +2

Query: 296 LTNVLEPDAMPGARTRGDLP-------LRFLQGNKSPLEVATEVAKEADEYNGFNLIL-A 451
           +TN L  D  P     GD         L+  +  KSP+ VAT+VA    +  G + ++  
Sbjct: 368 ITNYLRADGWPALAIHGDKQQGERDWVLKEFKTGKSPIMVATDVAARGIDVKGISYVINL 427

Query: 452 DLTRNVMVYV 481
           D+  N+  YV
Sbjct: 428 DMPGNIEDYV 437

>A5DL80:DBP2_PICGU ATP-dependent RNA helicase DBP2 - Pichia guilliermondii (Yeast)|
           (Candida guilliermondii)
          Length = 554

 Score = 31.6 bits (70), Expect = 7.8
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
 Frame = +2

Query: 296 LTNVLEPDAMPGARTRGDLP-------LRFLQGNKSPLEVATEVAKEADEYNGFNLIL-A 451
           +T+ L  D  P     GD         LR  +  KSP+ VAT+VA    +  G + ++  
Sbjct: 388 ITSYLRADGWPALAIHGDKQQNERDWVLREFKTGKSPIMVATDVAARGIDVKGISYVINY 447

Query: 452 DLTRNVMVYVSNRPKGQPATIQLVSPGLHVLSNARLDSPWQKAIR 586
           D+  N+  YV    +   A     +  L   +N++L     K +R
Sbjct: 448 DMPGNIEDYVHRIGRTGRAGTTGTAVSLFTEANSKLGGDLCKIMR 492

>Q3UHD1:BAI1_MOUSE Brain-specific angiogenesis inhibitor 1 precursor - Mus musculus|
            (Mouse)
          Length = 1582

 Score = 31.6 bits (70), Expect = 7.8
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
 Frame = +2

Query: 368  QGNKSPLEVATEVAKEADEYNGFNLILADLTRNV-----MVYVSNRPKGQPATIQLVSPG 532
            +G    ++   E++++   Y+G  L   D+ RN+       Y S  P      +Q++S  
Sbjct: 660  EGVSEVIQTLLEISQDGTSYSGDLLSTIDVLRNMTEIFRRAYYSPTPGDVQNFVQIIS-- 717

Query: 533  LHVLSNARLDSPWQKAIRLGKNFREFIRKHGD--DEV--EAKDIADRL-MTDTTRADKDR 697
             ++L+    D  W++A  +G N +E  R   D  D +    KD+ D   +TD       +
Sbjct: 718  -NLLAEENRDK-WEEAQLMGPNAKELFRLVEDFVDVIGFRMKDLRDAYQVTDNLVLSIHK 775

Query: 698  LPNTG 712
            LP +G
Sbjct: 776  LPASG 780


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 229,845,176
Number of extensions: 5148754
Number of successful extensions: 14845
Number of sequences better than 10.0: 14
Number of HSP's gapped: 14781
Number of HSP's successfully gapped: 15
Length of query: 442
Length of database: 100,686,439
Length adjustment: 116
Effective length of query: 326
Effective length of database: 68,868,219
Effective search space: 22451039394
Effective search space used: 22451039394
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)