| Clone Name | FLbaf76i22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001069406.1| Oryza sativa (japonica cultivar-group) Os09g0323500 (Os09g0323500) mRNA, complete cds Length = 1102 Score = 803 bits (405), Expect = 0.0 Identities = 708/809 (87%) Strand = Plus / Plus Query: 90 ctgaagccatgtgtatcgctgcatggatttggcaggctcacccacagcatcagctcctgc 149 |||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||| | Sbjct: 53 ctgaagccatgtgtatagctgcatgggtttggcaagctcacccacagcaccagctcctcc 112 Query: 150 tgctgctcaacagagatgagttccatagcaggcctacaaaggcagtaggatggtggggcg 209 ||||||||||| | |||||||||||||||||||| || |||||||||||||||||||| | Sbjct: 113 tgctgctcaaccgggatgagttccatagcaggccaaccaaggcagtaggatggtgggggg 172 Query: 210 agggctcaatgaagattcttggtggcagggatgtactcggtggaggaacatggatgggga 269 ||||||| | ||||||||||||||| || ||||| || |||||||| ||||||||||| Sbjct: 173 agggctcgaagaagattcttggtggtagagatgttcttggtggagggacatggatgggtt 232 Query: 270 gcaccaaagatggcaggcttgccttcctgaccaatgtgctcgagcctgatgcaatgcccg 329 |||| || ||||||||||| |||||||| ||||||||||||||||| || || ||||| | Sbjct: 233 gcacaaaggatggcaggctcgccttcctcaccaatgtgctcgagccggacgccatgccgg 292 Query: 330 gcgcacgcactaggggagacctgcccctcaggttcctgcagggaaacaagagcccactgg 389 | || ||||| |||||||| || |||||||||||||||||| | |||||||||||||| | Sbjct: 293 gggcgcgcacaaggggagatctccccctcaggttcctgcagagcaacaagagcccacttg 352 Query: 390 aggttgcgactgaagtggcaaaagaagctgatgagtacaatggcttcaaccttatactag 449 | ||||| ||||| ||||||||||||||||| |||||||| |||||||||||| |||| | Sbjct: 353 aagttgcaactgaggtggcaaaagaagctgacgagtacaacggcttcaaccttgtactgg 412 Query: 450 ctgatctaaccaggaatgtcatggtctacgtgtcaaaccggccaaaggggcagcctgcga 509 ||||||| |||| || |||||||| || |||||||| |||||||||||||||||||| | Sbjct: 413 ctgatctgaccacaaacgtcatggtttatgtgtcaaatcggccaaaggggcagcctgcaa 472 Query: 510 caattcagctcgtctcaccaggactccatgtgttgtccaatgcaaggcttgatagccctt 569 | || || || ||||||||||| |||||||||||||||||||||||||| || ||||||| Sbjct: 473 cgatccaacttgtctcaccagggctccatgtgttgtccaatgcaaggctagacagccctt 532 Query: 570 ggcagaaggcaattcgccttggtaaaaacttcagggagtttataaggaagcatggtgatg 629 |||||||||| |||||||| ||||| |||||||||||| | | |||||||||||||||| Sbjct: 533 ggcagaaggcgattcgcctcggtaagaacttcagggagcatcttaggaagcatggtgatg 592 Query: 630 atgaagttgaagcgaaggatatagctgacagactaatgactgacacgacgagggctgata 689 |||| |||||||| ||||| |||| ||| || |||||||||||||| || | |||||| | Sbjct: 593 atgaggttgaagccaaggacatagttgagaggctaatgactgacaccacaaaggctgaca 652 Query: 690 aagataggctgccaaacaccggttgtgatcccacctgggagcacggtctgagctccatct 749 ||||||||||||||||||| || |||||||| | |||||||||||| ||||||||||| | Sbjct: 653 aagataggctgccaaacactggctgtgatccaaactgggagcacggcctgagctccattt 712 Query: 750 tcatcgaggtgcaaactgacgaagggctctatgggacaaggagcacagcagttctttcag 809 |||| |||||||| |||||| | || ||||| |||||| ||||||| || ||||| |||| Sbjct: 713 tcattgaggtgcagactgaccagggactctacgggacacggagcacggccgttctatcag 772 Query: 810 tgaactatgatggagaagctagcttatatgaaaagtacctcgagagtggtatatggaaga 869 ||||||| || || ||||||||||| || || || ||||| |||||||||||||||||| Sbjct: 773 tgaactacgacggtgaagctagcttgtacgagaaatacctggagagtggtatatggaagg 832 Query: 870 accacacagtgcattaccagatagagtag 898 | ||||| ||||||||||||||||||||| Sbjct: 833 atcacacggtgcattaccagatagagtag 861
>dbj|AK071737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109A10, full insert sequence Length = 1103 Score = 803 bits (405), Expect = 0.0 Identities = 708/809 (87%) Strand = Plus / Plus Query: 90 ctgaagccatgtgtatcgctgcatggatttggcaggctcacccacagcatcagctcctgc 149 |||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||| | Sbjct: 54 ctgaagccatgtgtatagctgcatgggtttggcaagctcacccacagcaccagctcctcc 113 Query: 150 tgctgctcaacagagatgagttccatagcaggcctacaaaggcagtaggatggtggggcg 209 ||||||||||| | |||||||||||||||||||| || |||||||||||||||||||| | Sbjct: 114 tgctgctcaaccgggatgagttccatagcaggccaaccaaggcagtaggatggtgggggg 173 Query: 210 agggctcaatgaagattcttggtggcagggatgtactcggtggaggaacatggatgggga 269 ||||||| | ||||||||||||||| || ||||| || |||||||| ||||||||||| Sbjct: 174 agggctcgaagaagattcttggtggtagagatgttcttggtggagggacatggatgggtt 233 Query: 270 gcaccaaagatggcaggcttgccttcctgaccaatgtgctcgagcctgatgcaatgcccg 329 |||| || ||||||||||| |||||||| ||||||||||||||||| || || ||||| | Sbjct: 234 gcacaaaggatggcaggctcgccttcctcaccaatgtgctcgagccggacgccatgccgg 293 Query: 330 gcgcacgcactaggggagacctgcccctcaggttcctgcagggaaacaagagcccactgg 389 | || ||||| |||||||| || |||||||||||||||||| | |||||||||||||| | Sbjct: 294 gggcgcgcacaaggggagatctccccctcaggttcctgcagagcaacaagagcccacttg 353 Query: 390 aggttgcgactgaagtggcaaaagaagctgatgagtacaatggcttcaaccttatactag 449 | ||||| ||||| ||||||||||||||||| |||||||| |||||||||||| |||| | Sbjct: 354 aagttgcaactgaggtggcaaaagaagctgacgagtacaacggcttcaaccttgtactgg 413 Query: 450 ctgatctaaccaggaatgtcatggtctacgtgtcaaaccggccaaaggggcagcctgcga 509 ||||||| |||| || |||||||| || |||||||| |||||||||||||||||||| | Sbjct: 414 ctgatctgaccacaaacgtcatggtttatgtgtcaaatcggccaaaggggcagcctgcaa 473 Query: 510 caattcagctcgtctcaccaggactccatgtgttgtccaatgcaaggcttgatagccctt 569 | || || || ||||||||||| |||||||||||||||||||||||||| || ||||||| Sbjct: 474 cgatccaacttgtctcaccagggctccatgtgttgtccaatgcaaggctagacagccctt 533 Query: 570 ggcagaaggcaattcgccttggtaaaaacttcagggagtttataaggaagcatggtgatg 629 |||||||||| |||||||| ||||| |||||||||||| | | |||||||||||||||| Sbjct: 534 ggcagaaggcgattcgcctcggtaagaacttcagggagcatcttaggaagcatggtgatg 593 Query: 630 atgaagttgaagcgaaggatatagctgacagactaatgactgacacgacgagggctgata 689 |||| |||||||| ||||| |||| ||| || |||||||||||||| || | |||||| | Sbjct: 594 atgaggttgaagccaaggacatagttgagaggctaatgactgacaccacaaaggctgaca 653 Query: 690 aagataggctgccaaacaccggttgtgatcccacctgggagcacggtctgagctccatct 749 ||||||||||||||||||| || |||||||| | |||||||||||| ||||||||||| | Sbjct: 654 aagataggctgccaaacactggctgtgatccaaactgggagcacggcctgagctccattt 713 Query: 750 tcatcgaggtgcaaactgacgaagggctctatgggacaaggagcacagcagttctttcag 809 |||| |||||||| |||||| | || ||||| |||||| ||||||| || ||||| |||| Sbjct: 714 tcattgaggtgcagactgaccagggactctacgggacacggagcacggccgttctatcag 773 Query: 810 tgaactatgatggagaagctagcttatatgaaaagtacctcgagagtggtatatggaaga 869 ||||||| || || ||||||||||| || || || ||||| |||||||||||||||||| Sbjct: 774 tgaactacgacggtgaagctagcttgtacgagaaatacctggagagtggtatatggaagg 833 Query: 870 accacacagtgcattaccagatagagtag 898 | ||||| ||||||||||||||||||||| Sbjct: 834 atcacacggtgcattaccagatagagtag 862
>gb|AY112206.1| Zea mays CL9766_1 mRNA sequence Length = 674 Score = 484 bits (244), Expect = e-133 Identities = 415/474 (87%) Strand = Plus / Minus Query: 425 tacaatggcttcaaccttatactagctgatctaaccaggaatgtcatggtctacgtgtca 484 ||||||||||||||||| ||||||||||||||| | | ||| ||||||| || |||||| Sbjct: 657 tacaatggcttcaacctcatactagctgatctancaacaaatatcatggtttatgtgtca 598 Query: 485 aaccggccaaaggggcagcctgcgacaattcagctcgtctcaccaggactccatgtgttg 544 |||||||| ||||| |||||||| ||||||| ||||| |||||||||||||||||| || Sbjct: 597 aaccggcctaagggtcagcctgcaccaattcaactcgtgtcaccaggactccatgtgctg 538 Query: 545 tccaatgcaaggcttgatagcccttggcagaaggcaattcgccttggtaaaaacttcagg 604 |||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||| Sbjct: 537 tccaatgcaaggctagatagcccttggcagaaggcaattctcctcggtnnnnncttcagg 478 Query: 605 gagtttataaggaagcatggtgatgatgaagttgaagcgaaggatatagctgacagacta 664 ||| || | ||| ||||||||| |||||| ||||||| ||||||||||| ||| || ||| Sbjct: 477 gagcttcttagggagcatggtgctgatgaggttgaagtgaaggatatagttgagaggcta 418 Query: 665 atgactgacacgacgagggctgataaagataggctgccaaacaccggttgtgatcccacc 724 ||||||||||| | | |||||| |||||||| ||||||||||| ||||||||||||| | Sbjct: 417 atgactgacaccccaaaggctgacaaagatagactgccaaacactggttgtgatcccaac 358 Query: 725 tgggagcacggtctgagctccatcttcatcgaggtgcaaactgacgaagggctctatggg 784 |||||||| |||||||||||||||||||| ||||||||||||||| |||||| ||||||| Sbjct: 357 tgggagcatggtctgagctccatcttcattgaggtgcaaactgaccaagggccctatggg 298 Query: 785 acaaggagcacagcagttctttcagtgaactatgatggagaagctagcttatatgaaaag 844 ||| |||||||||| ||| | ||||||||||||||||| ||||||||||| || || ||| Sbjct: 297 acacggagcacagccgttttatcagtgaactatgatggcgaagctagcttgtacgagaag 238 Query: 845 tacctcgagagtggtatatggaagaaccacacagtgcattaccagatagagtag 898 || || |||||||||||||||||| | ||||||||| |||||||||||||||| Sbjct: 237 tatcttgagagtggtatatggaaggatcacacagtgagttaccagatagagtag 184
>gb|BT023985.1| Zea mays clone EL01N0413G11 mRNA sequence Length = 1591 Score = 444 bits (224), Expect = e-121 Identities = 361/404 (89%), Gaps = 2/404 (0%) Strand = Plus / Plus Query: 177 gcaggcctacaaaggcagtaggatggtggggcgagggctcaatgaagattcttggtggca 236 ||||||||||||| ||||||||||||||||| || ||||||| |||||| |||||||||| Sbjct: 88 gcaggcctacaaaagcagtaggatggtggggtgaaggctcaaagaagatccttggtggca 147 Query: 237 gggatgtactcggtggaggaacatggatggggagcaccaaagatggcaggcttgccttcc 296 ||||||| || ||||||||||||||| ||||| ||||||| ||||| ||||||||||||| Sbjct: 148 gggatgtgcttggtggaggaacatgggtggggtgcaccaaggatggaaggcttgccttcc 207 Query: 297 tgaccaatgtgctcgagcctgatgcaatgcccggcgcacgcactaggggagacctgcccc 356 ||||||||||||| || || ||||| |||||||| ||||| ||||||||||| ||||| | Sbjct: 208 tgaccaatgtgcttgaaccagatgccatgcccggtgcacggactaggggagatctgcctc 267 Query: 357 tcaggttcctgcagggaaacaagagcccactggaggttgcgactgaagtggcaaaagaag 416 ||| ||||||||| | |||||||||||||| || ||||| |||||||||||| |||||| Sbjct: 268 tcaaattcctgcagagcaacaagagcccactcgaagttgcaactgaagtggcagaagaag 327 Query: 417 ctgatgagtacaatggcttcaaccttatactagctgatctaaccaggaatgtcatggtct 476 ||||||| ||||||||||||||||| ||||||||||||||||| | ||| ||||||| | Sbjct: 328 ctgatgaatacaatggcttcaacctcatactagctgatctaacaacaaatatcatggttt 387 Query: 477 acgtgtcaaaccggcc-aaaggggcagcctgcgacaattcagctcgtctcaccaggactc 535 | |||||||||||||| |||||| |||||||| |||||||| ||||| |||||||||||| Sbjct: 388 atgtgtcaaaccggcctaaagggtcagcctgcaacaattcaactcgtgtcaccaggactc 447 Query: 536 catgtgttgtccaatgcaa-ggcttgatagcccttggcagaagg 578 |||||| |||||||||||| |||| ||||||||||||||||||| Sbjct: 448 catgtgctgtccaatgcaagggctagatagcccttggcagaagg 491 Score = 218 bits (110), Expect = 4e-53 Identities = 173/194 (89%) Strand = Plus / Plus Query: 576 aggcaattcgccttggtaaaaacttcagggagtttataaggaagcatggtgatgatgaag 635 ||||||||| ||| |||||||||||||||||| || | ||| ||||||||| |||||| | Sbjct: 963 aggcaattctcctcggtaaaaacttcagggagcttcttagggagcatggtgctgatgagg 1022 Query: 636 ttgaagcgaaggatatagctgacagactaatgactgacacgacgagggctgataaagata 695 |||||| ||||||||||| ||| || |||||||||||||| || | |||||| ||||||| Sbjct: 1023 ttgaagtgaaggatatagttgagaggctaatgactgacaccacaaaggctgacaaagata 1082 Query: 696 ggctgccaaacaccggttgtgatcccacctgggagcacggtctgagctccatcttcatcg 755 | ||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| | Sbjct: 1083 gactgccaaacactggttgtgatcccaactgggagcatggtctgagctccatcttcattg 1142 Query: 756 aggtgcaaactgac 769 |||||||||||||| Sbjct: 1143 aggtgcaaactgac 1156 Score = 69.9 bits (35), Expect = 2e-08 Identities = 105/127 (82%), Gaps = 1/127 (0%) Strand = Plus / Plus Query: 773 gggctctatgggacaaggagcacagcagttctttc-agtgaactatgatggagaagctag 831 |||| |||||||||| |||||||||| ||| | || ||||||||||||||| |||||||| Sbjct: 1297 gggccctatgggacagggagcacagccgttttctccagtgaactatgatggcgaagctag 1356 Query: 832 cttatatgaaaagtacctcgagagtggtatatggaagaaccacacagtgcattaccagat 891 ||| || || ||||| || |||||||||||||| | | | ||||| ||||||||| Sbjct: 1357 cttgtacgagaagtatcttccacgtggtatatggaaggatcccccagtgagttaccagat 1416 Query: 892 agagtag 898 ||||||| Sbjct: 1417 agagtag 1423
>emb|CT828596.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI008B22, full insert sequence Length = 719 Score = 305 bits (154), Expect = 2e-79 Identities = 250/282 (88%) Strand = Plus / Plus Query: 90 ctgaagccatgtgtatcgctgcatggatttggcaggctcacccacagcatcagctcctgc 149 |||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||| | Sbjct: 54 ctgaagccatgtgtatagctgcatgggtttggcaagctcacccacagcaccagctcctcc 113 Query: 150 tgctgctcaacagagatgagttccatagcaggcctacaaaggcagtaggatggtggggcg 209 ||||||||||| | |||||||||||||||||||| || |||||||||||||||||||| | Sbjct: 114 tgctgctcaaccgggatgagttccatagcaggccaaccaaggcagtaggatggtgggggg 173 Query: 210 agggctcaatgaagattcttggtggcagggatgtactcggtggaggaacatggatgggga 269 ||||||| | ||||||||||||||| || ||||| || |||||||| ||||||||||| Sbjct: 174 agggctcgaagaagattcttggtggtagagatgttcttggtggagggacatggatgggtt 233 Query: 270 gcaccaaagatggcaggcttgccttcctgaccaatgtgctcgagcctgatgcaatgcccg 329 |||| || ||||||||||| |||||||| ||||||||||||||||| || || ||||| | Sbjct: 234 gcacaaaggatggcaggctcgccttcctcaccaatgtgctcgagccggacgccatgccgg 293 Query: 330 gcgcacgcactaggggagacctgcccctcaggttcctgcagg 371 | || ||||| |||||||| || ||||||||||||||||||| Sbjct: 294 gggcgcgcacaaggggagatctccccctcaggttcctgcagg 335
>emb|CT828597.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA009J13, full insert sequence Length = 738 Score = 272 bits (137), Expect = 3e-69 Identities = 248/285 (87%) Strand = Plus / Plus Query: 614 aggaagcatggtgatgatgaagttgaagcgaaggatatagctgacagactaatgactgac 673 |||||||||||||||||||| |||||||| ||||| |||| ||| || |||||||||||| Sbjct: 215 aggaagcatggtgatgatgaggttgaagccaaggacatagttgagaggctaatgactgac 274 Query: 674 acgacgagggctgataaagataggctgccaaacaccggttgtgatcccacctgggagcac 733 || || | |||||| |||||||||||||||||||| || |||||||| | |||||||||| Sbjct: 275 accacaaaggctgacaaagataggctgccaaacactggctgtgatccaaactgggagcac 334 Query: 734 ggtctgagctccatcttcatcgaggtgcaaactgacgaagggctctatgggacaaggagc 793 || ||||||||||| ||||| |||||||| |||||| | || ||||| |||||| ||||| Sbjct: 335 ggcctgagctccattttcattgaggtgcagactgaccagggactctacgggacacggagc 394 Query: 794 acagcagttctttcagtgaactatgatggagaagctagcttatatgaaaagtacctcgag 853 || || ||||| ||||||||||| || || ||||||||||| || || || ||||| ||| Sbjct: 395 acggccgttctatcagtgaactacgacggtgaagctagcttgtacgagaaatacctggag 454 Query: 854 agtggtatatggaagaaccacacagtgcattaccagatagagtag 898 ||||||||||||||| | ||||| ||||||||||||||||||||| Sbjct: 455 agtggtatatggaaggatcacacggtgcattaccagatagagtag 499 Score = 224 bits (113), Expect = 6e-55 Identities = 182/205 (88%) Strand = Plus / Plus Query: 374 aacaagagcccactggaggttgcgactgaagtggcaaaagaagctgatgagtacaatggc 433 |||||||||||||| || ||||| ||||| ||||||||||||||||| |||||||| ||| Sbjct: 1 aacaagagcccacttgaagttgcaactgaggtggcaaaagaagctgacgagtacaacggc 60 Query: 434 ttcaaccttatactagctgatctaaccaggaatgtcatggtctacgtgtcaaaccggcca 493 ||||||||| |||| |||||||| |||| || |||||||| || |||||||| |||||| Sbjct: 61 ttcaaccttgtactggctgatctgaccacaaacgtcatggtttatgtgtcaaatcggcca 120 Query: 494 aaggggcagcctgcgacaattcagctcgtctcaccaggactccatgtgttgtccaatgca 553 |||||||||||||| || || || || ||||||||||| ||||||||||||||||||||| Sbjct: 121 aaggggcagcctgcaacgatccaacttgtctcaccagggctccatgtgttgtccaatgca 180 Query: 554 aggcttgatagcccttggcagaagg 578 ||||| || |||||||||||||||| Sbjct: 181 aggctagacagcccttggcagaagg 205
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 226 bits (114), Expect = 2e-55 Identities = 186/210 (88%) Strand = Plus / Minus Query: 374 aacaagagcccactggaggttgcgactgaagtggcaaaagaagctgatgagtacaatggc 433 |||||||||||||| || ||||| ||||| ||||||||||||||||| |||||||| ||| Sbjct: 9425088 aacaagagcccacttgaagttgcaactgaggtggcaaaagaagctgacgagtacaacggc 9425029 Query: 434 ttcaaccttatactagctgatctaaccaggaatgtcatggtctacgtgtcaaaccggcca 493 ||||||||| |||| |||||||| |||| || |||||||| || |||||||| |||||| Sbjct: 9425028 ttcaaccttgtactggctgatctgaccacaaacgtcatggtttatgtgtcaaatcggcca 9424969 Query: 494 aaggggcagcctgcgacaattcagctcgtctcaccaggactccatgtgttgtccaatgca 553 |||||||||||||| || || || || ||||||||||| ||||||||||||||||||||| Sbjct: 9424968 aaggggcagcctgcaacgatccaacttgtctcaccagggctccatgtgttgtccaatgca 9424909 Query: 554 aggcttgatagcccttggcagaaggcaatt 583 ||||| || |||||||||||||||| |||| Sbjct: 9424908 aggctagacagcccttggcagaaggtaatt 9424879 Score = 188 bits (95), Expect = 3e-44 Identities = 170/195 (87%) Strand = Plus / Minus Query: 177 gcaggcctacaaaggcagtaggatggtggggcgagggctcaatgaagattcttggtggca 236 ||||||| || |||||||||||||||||||| |||||||| | ||||||||||||||| | Sbjct: 9425711 gcaggccaaccaaggcagtaggatggtggggggagggctcgaagaagattcttggtggta 9425652 Query: 237 gggatgtactcggtggaggaacatggatggggagcaccaaagatggcaggcttgccttcc 296 | ||||| || |||||||| ||||||||||| |||| || ||||||||||| ||||||| Sbjct: 9425651 gagatgttcttggtggagggacatggatgggttgcacaaaggatggcaggctcgccttcc 9425592 Query: 297 tgaccaatgtgctcgagcctgatgcaatgcccggcgcacgcactaggggagacctgcccc 356 | ||||||||||||||||| || || ||||| || || ||||| |||||||| || |||| Sbjct: 9425591 tcaccaatgtgctcgagccggacgccatgccgggggcgcgcacaaggggagatctccccc 9425532 Query: 357 tcaggttcctgcagg 371 ||||||||||||||| Sbjct: 9425531 tcaggttcctgcagg 9425517 Score = 186 bits (94), Expect = 1e-43 Identities = 169/194 (87%) Strand = Plus / Minus Query: 576 aggcaattcgccttggtaaaaacttcagggagtttataaggaagcatggtgatgatgaag 635 |||| |||||||| ||||| |||||||||||| | | |||||||||||||||||||| | Sbjct: 9424395 aggcgattcgcctcggtaagaacttcagggagcatcttaggaagcatggtgatgatgagg 9424336 Query: 636 ttgaagcgaaggatatagctgacagactaatgactgacacgacgagggctgataaagata 695 ||||||| ||||| |||| ||| || |||||||||||||| || | |||||| ||||||| Sbjct: 9424335 ttgaagccaaggacatagttgagaggctaatgactgacaccacaaaggctgacaaagata 9424276 Query: 696 ggctgccaaacaccggttgtgatcccacctgggagcacggtctgagctccatcttcatcg 755 ||||||||||||| || |||||||| | |||||||||||| ||||||||||| ||||| | Sbjct: 9424275 ggctgccaaacactggctgtgatccaaactgggagcacggcctgagctccattttcattg 9424216 Query: 756 aggtgcaaactgac 769 ||||||| |||||| Sbjct: 9424215 aggtgcagactgac 9424202 Score = 127 bits (64), Expect = 1e-25 Identities = 85/92 (92%) Strand = Plus / Minus Query: 90 ctgaagccatgtgtatcgctgcatggatttggcaggctcacccacagcatcagctcctgc 149 |||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||| | Sbjct: 9425939 ctgaagccatgtgtatagctgcatgggtttggcaagctcacccacagcaccagctcctcc 9425880 Query: 150 tgctgctcaacagagatgagttccatagcagg 181 ||||||||||| | |||||||||||||||||| Sbjct: 9425879 tgctgctcaaccgggatgagttccatagcagg 9425848 Score = 117 bits (59), Expect = 1e-22 Identities = 107/123 (86%) Strand = Plus / Minus Query: 776 ctctatgggacaaggagcacagcagttctttcagtgaactatgatggagaagctagctta 835 ||||| |||||| ||||||| || ||||| ||||||||||| || || ||||||||||| Sbjct: 9423996 ctctacgggacacggagcacggccgttctatcagtgaactacgacggtgaagctagcttg 9423937 Query: 836 tatgaaaagtacctcgagagtggtatatggaagaaccacacagtgcattaccagatagag 895 || || || ||||| |||||||||||||||||| | ||||| |||||||||||||||||| Sbjct: 9423936 tacgagaaatacctggagagtggtatatggaaggatcacacggtgcattaccagatagag 9423877 Query: 896 tag 898 ||| Sbjct: 9423876 tag 9423874
>dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0024J13 Length = 127614 Score = 226 bits (114), Expect = 2e-55 Identities = 186/210 (88%) Strand = Plus / Minus Query: 374 aacaagagcccactggaggttgcgactgaagtggcaaaagaagctgatgagtacaatggc 433 |||||||||||||| || ||||| ||||| ||||||||||||||||| |||||||| ||| Sbjct: 108502 aacaagagcccacttgaagttgcaactgaggtggcaaaagaagctgacgagtacaacggc 108443 Query: 434 ttcaaccttatactagctgatctaaccaggaatgtcatggtctacgtgtcaaaccggcca 493 ||||||||| |||| |||||||| |||| || |||||||| || |||||||| |||||| Sbjct: 108442 ttcaaccttgtactggctgatctgaccacaaacgtcatggtttatgtgtcaaatcggcca 108383 Query: 494 aaggggcagcctgcgacaattcagctcgtctcaccaggactccatgtgttgtccaatgca 553 |||||||||||||| || || || || ||||||||||| ||||||||||||||||||||| Sbjct: 108382 aaggggcagcctgcaacgatccaacttgtctcaccagggctccatgtgttgtccaatgca 108323 Query: 554 aggcttgatagcccttggcagaaggcaatt 583 ||||| || |||||||||||||||| |||| Sbjct: 108322 aggctagacagcccttggcagaaggtaatt 108293 Score = 188 bits (95), Expect = 3e-44 Identities = 170/195 (87%) Strand = Plus / Minus Query: 177 gcaggcctacaaaggcagtaggatggtggggcgagggctcaatgaagattcttggtggca 236 ||||||| || |||||||||||||||||||| |||||||| | ||||||||||||||| | Sbjct: 109125 gcaggccaaccaaggcagtaggatggtggggggagggctcgaagaagattcttggtggta 109066 Query: 237 gggatgtactcggtggaggaacatggatggggagcaccaaagatggcaggcttgccttcc 296 | ||||| || |||||||| ||||||||||| |||| || ||||||||||| ||||||| Sbjct: 109065 gagatgttcttggtggagggacatggatgggttgcacaaaggatggcaggctcgccttcc 109006 Query: 297 tgaccaatgtgctcgagcctgatgcaatgcccggcgcacgcactaggggagacctgcccc 356 | ||||||||||||||||| || || ||||| || || ||||| |||||||| || |||| Sbjct: 109005 tcaccaatgtgctcgagccggacgccatgccgggggcgcgcacaaggggagatctccccc 108946 Query: 357 tcaggttcctgcagg 371 ||||||||||||||| Sbjct: 108945 tcaggttcctgcagg 108931 Score = 186 bits (94), Expect = 1e-43 Identities = 169/194 (87%) Strand = Plus / Minus Query: 576 aggcaattcgccttggtaaaaacttcagggagtttataaggaagcatggtgatgatgaag 635 |||| |||||||| ||||| |||||||||||| | | |||||||||||||||||||| | Sbjct: 107809 aggcgattcgcctcggtaagaacttcagggagcatcttaggaagcatggtgatgatgagg 107750 Query: 636 ttgaagcgaaggatatagctgacagactaatgactgacacgacgagggctgataaagata 695 ||||||| ||||| |||| ||| || |||||||||||||| || | |||||| ||||||| Sbjct: 107749 ttgaagccaaggacatagttgagaggctaatgactgacaccacaaaggctgacaaagata 107690 Query: 696 ggctgccaaacaccggttgtgatcccacctgggagcacggtctgagctccatcttcatcg 755 ||||||||||||| || |||||||| | |||||||||||| ||||||||||| ||||| | Sbjct: 107689 ggctgccaaacactggctgtgatccaaactgggagcacggcctgagctccattttcattg 107630 Query: 756 aggtgcaaactgac 769 ||||||| |||||| Sbjct: 107629 aggtgcagactgac 107616 Score = 127 bits (64), Expect = 1e-25 Identities = 85/92 (92%) Strand = Plus / Minus Query: 90 ctgaagccatgtgtatcgctgcatggatttggcaggctcacccacagcatcagctcctgc 149 |||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||| | Sbjct: 109353 ctgaagccatgtgtatagctgcatgggtttggcaagctcacccacagcaccagctcctcc 109294 Query: 150 tgctgctcaacagagatgagttccatagcagg 181 ||||||||||| | |||||||||||||||||| Sbjct: 109293 tgctgctcaaccgggatgagttccatagcagg 109262 Score = 117 bits (59), Expect = 1e-22 Identities = 107/123 (86%) Strand = Plus / Minus Query: 776 ctctatgggacaaggagcacagcagttctttcagtgaactatgatggagaagctagctta 835 ||||| |||||| ||||||| || ||||| ||||||||||| || || ||||||||||| Sbjct: 107410 ctctacgggacacggagcacggccgttctatcagtgaactacgacggtgaagctagcttg 107351 Query: 836 tatgaaaagtacctcgagagtggtatatggaagaaccacacagtgcattaccagatagag 895 || || || ||||| |||||||||||||||||| | ||||| |||||||||||||||||| Sbjct: 107350 tacgagaaatacctggagagtggtatatggaaggatcacacggtgcattaccagatagag 107291 Query: 896 tag 898 ||| Sbjct: 107290 tag 107288
>dbj|AB108267.1| Phleum pratense DNA, SSR, microsatellite A16-A08 Length = 534 Score = 46.1 bits (23), Expect = 0.32 Identities = 23/23 (100%) Strand = Plus / Plus Query: 183 ctacaaaggcagtaggatggtgg 205 ||||||||||||||||||||||| Sbjct: 147 ctacaaaggcagtaggatggtgg 169 Score = 42.1 bits (21), Expect = 5.0 Identities = 39/45 (86%) Strand = Plus / Plus Query: 237 gggatgtactcggtggaggaacatggatggggagcaccaaagatg 281 ||||||| || |||||||||||||||| | ||||||||| |||| Sbjct: 224 gggatgtgcttggtggaggaacatggaatgtgagcaccaacgatg 268
>emb|BX511019.6| Zebrafish DNA sequence from clone CH211-89O9 in linkage group 1, complete sequence Length = 180744 Score = 46.1 bits (23), Expect = 0.32 Identities = 23/23 (100%) Strand = Plus / Plus Query: 922 gcccaaaataggaagaaagaatg 944 ||||||||||||||||||||||| Sbjct: 73790 gcccaaaataggaagaaagaatg 73812
>ref|NM_124968.1| Arabidopsis thaliana unknown protein (AT5G55860) mRNA, complete cds Length = 1950 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 627 atgatgaagttgaagcgaagga 648 |||||||||||||||||||||| Sbjct: 1028 atgatgaagttgaagcgaagga 1049
>gb|AY735732.1| Arabidopsis thaliana hypothetical protein AT5G55860 mRNA, complete cds Length = 2498 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 627 atgatgaagttgaagcgaagga 648 |||||||||||||||||||||| Sbjct: 1320 atgatgaagttgaagcgaagga 1341
>gb|DQ056724.1| Arabidopsis thaliana hypothetical protein (At5g55860) mRNA, complete cds Length = 1950 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 627 atgatgaagttgaagcgaagga 648 |||||||||||||||||||||| Sbjct: 1028 atgatgaagttgaagcgaagga 1049
>dbj|AB018120.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWJ3 Length = 42356 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 627 atgatgaagttgaagcgaagga 648 |||||||||||||||||||||| Sbjct: 16127 atgatgaagttgaagcgaagga 16148
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 ctcacccacagcatcagctcc 146 ||||||||||||||||||||| Sbjct: 12416023 ctcacccacagcatcagctcc 12416003
>ref|XM_001054775.1| PREDICTED: Rattus norvegicus similar to bone morphogenetic protein 8b (LOC679119), mRNA Length = 1676 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 807 cagtgaactatgatggagaag 827 ||||||||||||||||||||| Sbjct: 1621 cagtgaactatgatggagaag 1641
>ref|XM_657725.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5213.2), mRNA Length = 981 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 catcagctcctgctgctgctc 157 ||||||||||||||||||||| Sbjct: 774 catcagctcctgctgctgctc 794
>gb|AC112153.4| Mus musculus BAC clone RP24-93G11 from chromosome 19, complete sequence Length = 180944 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 926 aaaataggaagaaagaatgaa 946 ||||||||||||||||||||| Sbjct: 100216 aaaataggaagaaagaatgaa 100236
>gb|AC131711.3| Mus musculus BAC clone RP23-192M18 from 6, complete sequence Length = 228400 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 tgctgctgctcaacagagatg 167 ||||||||||||||||||||| Sbjct: 59353 tgctgctgctcaacagagatg 59373
>ref|NM_079317.2| Drosophila melanogaster twin of eyg CG10704-RA (toe), mRNA Length = 2402 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 ctcacccacagcatcagctcc 146 ||||||||||||||||||||| Sbjct: 1987 ctcacccacagcatcagctcc 2007
>gb|AC091293.2| Takifugu rubripes clone 283N9, complete sequence Length = 147908 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 365 ctgcagggaaacaagagccca 385 ||||||||||||||||||||| Sbjct: 124824 ctgcagggaaacaagagccca 124804
>gb|AC125618.1| Homo sapiens 3 BAC RP11-510K16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 58110 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 863 tggaagaaccacacagtgcattacc 887 ||||||||||| ||||||||||||| Sbjct: 42399 tggaagaaccatacagtgcattacc 42423
>gb|AC093438.2| Drosophila melanogaster 3L BAC RP98-26C20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167344 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 ctcacccacagcatcagctcc 146 ||||||||||||||||||||| Sbjct: 100805 ctcacccacagcatcagctcc 100785
>gb|AC087710.8| Homo sapiens chromosome 8, clone RP11-11A18, complete sequence Length = 167139 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 927 aaataggaagaaagaatgaat 947 ||||||||||||||||||||| Sbjct: 31976 aaataggaagaaagaatgaat 31996
>gb|AC006161.3| Arabidopsis thaliana chromosome 2 clone T14A4 map mi310, complete sequence Length = 99761 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 621 atggtgatgatgaagttgaag 641 ||||||||||||||||||||| Sbjct: 86875 atggtgatgatgaagttgaag 86895
>gb|AY069177.1| Drosophila melanogaster GH22493 full length cDNA Length = 2424 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 ctcacccacagcatcagctcc 146 ||||||||||||||||||||| Sbjct: 1987 ctcacccacagcatcagctcc 2007
>gb|AC024996.6| Homo sapiens chromosome 8, clone RP11-697C18, complete sequence Length = 177864 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 927 aaataggaagaaagaatgaat 947 ||||||||||||||||||||| Sbjct: 48986 aaataggaagaaagaatgaat 48966
>emb|AL139247.12| Human DNA sequence from clone RP1-52J10 on chromosome 1 Contains the SPRL3A gene for small proline rich-like (epidermal differentiation complex) 3A, the LEP14 gene for late envelope protein 14, the LEP13 gene for late envelope protein 13, a small proline rich-like (epidermal differentiation complex) 1B (SPRL1B) pseudogene, a novel gene, the SPRL1A gene for small proline rich-like (epidermal differentiation complex) 1A, the LEP11 gene for late envelope protein 11 and the SPRL1B gene for small proline rich-like (epidermal differentiation complex) 1B, complete sequence Length = 117084 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1018 gattaaattatttactgtatg 1038 ||||||||||||||||||||| Sbjct: 4615 gattaaattatttactgtatg 4595
>gb|AC022166.7| Homo sapiens chromosome 16 clone RP11-525K10, complete sequence Length = 163998 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 872 cacacagtgcattaccagata 892 ||||||||||||||||||||| Sbjct: 127442 cacacagtgcattaccagata 127422
>emb|AJ508355.1|BMA508355 Brugia malayi ORF1, ORF2, ORF3 and ORF4 DNA and alt-1 gene Length = 32442 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1019 attaaattatttactgtatgc 1039 ||||||||||||||||||||| Sbjct: 21810 attaaattatttactgtatgc 21830
>gb|AC156505.6| Mus musculus 10 BAC RP24-270N22 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 190789 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 926 aaaataggaagaaagaatgaa 946 ||||||||||||||||||||| Sbjct: 59423 aaaataggaagaaagaatgaa 59443
>gb|AC108483.3| Homo sapiens chromosome 16 clone RP11-170P24, complete sequence Length = 163976 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 872 cacacagtgcattaccagata 892 ||||||||||||||||||||| Sbjct: 149821 cacacagtgcattaccagata 149841
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 114 ggatttggcaggctcacccacagca 138 ||||||||||||| ||||||||||| Sbjct: 4298897 ggatttggcaggcccacccacagca 4298873
>dbj|BS000073.1| Pan troglodytes chromosome 22 clone:RP43-040P11, map 22, complete sequences Length = 148593 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1275 tataaagaaaaagctctgtgc 1295 ||||||||||||||||||||| Sbjct: 92649 tataaagaaaaagctctgtgc 92669
>emb|AJ871176.1| Bos taurus ABCG2 gene, PKD2 gene and SPP1 gene, clone RPCI42_5K14 Length = 171712 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 65 ttagaagcagggagtaaggaaccac 89 |||||||||||||| |||||||||| Sbjct: 56136 ttagaagcagggagaaaggaaccac 56160
>gb|AC138621.4| Mus musculus BAC clone RP23-273E16 from 6, complete sequence Length = 225376 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 tgctgctgctcaacagagatg 167 ||||||||||||||||||||| Sbjct: 42861 tgctgctgctcaacagagatg 42841
>emb|AL713968.9| Mouse DNA sequence from clone RP23-387L21 on chromosome X, complete sequence Length = 100240 Score = 42.1 bits (21), Expect = 5.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 945 aatagctacaattgtgcatgctgttattt 973 |||||||| |||||| ||||||||||||| Sbjct: 13321 aatagctaaaattgtacatgctgttattt 13349 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 237,475,786 Number of extensions: 13125095 Number of successful extensions: 284413 Number of sequences better than 10.0: 37 Number of HSP's gapped: 284410 Number of HSP's successfully gapped: 49 Length of query: 1326 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1303 Effective length of database: 18,503,978,556 Effective search space: 24110684058468 Effective search space used: 24110684058468 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)