ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf73e13 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os09g24409:12009.t003513:unspliced-genomic chloroplast 30S ribosomal protein S3, putative, expressed| Length = 2474 Score = 58.3 bits (121), Expect = 7e-08 Identities = 25/45 (55%), Positives = 28/45 (62%) Frame = +2 / +1 Query: 308 WSRRSSILPEFVGSSALIYNGKTHVRCRITEGKVGHKFGEFAFTR 442 WSR SSILP VG + I+NGK H+ IT VG K GEF TR Sbjct: 82 WSRASSILPAMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTR 216 Score = 38.2 bits (77), Expect = 0.087 Identities = 20/49 (40%), Positives = 28/49 (57%) Frame = -3 / -1 Query: 450 LRFRVKANSPNLWPTFPSVILQRTWVLPL*MSAEEPTNSGRIEDLRDQI 304 ++ RV NSPNL PT V+ PL*++ PT +GR+ D RD + Sbjct: 224 VKCRVGTNSPNLRPTIGFVM*IGICSFPL*IAIVWPTIAGRMLDARDHV 78
>LOC_Os09g19952:12009.t003576:unspliced-genomic chloroplast 50S ribosomal protein L22, putative, expressed| Length = 2455 Score = 58.3 bits (121), Expect = 7e-08 Identities = 25/45 (55%), Positives = 28/45 (62%) Frame = +2 / +1 Query: 308 WSRRSSILPEFVGSSALIYNGKTHVRCRITEGKVGHKFGEFAFTR 442 WSR SSILP VG + I+NGK H+ IT VG K GEF TR Sbjct: 82 WSRASSILPAMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTR 216 Score = 38.2 bits (77), Expect = 0.087 Identities = 20/49 (40%), Positives = 28/49 (57%) Frame = -3 / -3 Query: 450 LRFRVKANSPNLWPTFPSVILQRTWVLPL*MSAEEPTNSGRIEDLRDQI 304 ++ RV NSPNL PT V+ PL*++ PT +GR+ D RD + Sbjct: 224 VKCRVGTNSPNLRPTIGFVM*IGICSFPL*IAIVWPTIAGRMLDARDHV 78
>LOC_Os04g16780:12004.t05450:unspliced-genomic chloroplast 30S ribosomal protein S3, putative, expressed| Length = 4658 Score = 58.3 bits (121), Expect = 7e-08 Identities = 25/45 (55%), Positives = 28/45 (62%) Frame = +2 / +1 Query: 308 WSRRSSILPEFVGSSALIYNGKTHVRCRITEGKVGHKFGEFAFTR 442 WSR SSILP VG + I+NGK H+ IT VG K GEF TR Sbjct: 688 WSRASSILPAMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTR 822 Score = 38.2 bits (77), Expect = 0.087 Identities = 20/49 (40%), Positives = 28/49 (57%) Frame = -3 / -1 Query: 450 LRFRVKANSPNLWPTFPSVILQRTWVLPL*MSAEEPTNSGRIEDLRDQI 304 ++ RV NSPNL PT V+ PL*++ PT +GR+ D RD + Sbjct: 830 VKCRVGTNSPNLRPTIGFVM*IGICSFPL*IAIVWPTIAGRMLDARDHV 684
>LOC_Os04g16774:12004.t05451:unspliced-genomic conserved hypothetical protein| Length = 3731 Score = 58.3 bits (121), Expect = 7e-08 Identities = 25/45 (55%), Positives = 28/45 (62%) Frame = +2 / -2 Query: 308 WSRRSSILPEFVGSSALIYNGKTHVRCRITEGKVGHKFGEFAFTR 442 WSR SSILP VG + I+NGK H+ IT VG K GEF TR Sbjct: 1540 WSRASSILPAMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTR 1406 Score = 38.2 bits (77), Expect = 0.087 Identities = 20/49 (40%), Positives = 28/49 (57%) Frame = -3 / +3 Query: 450 LRFRVKANSPNLWPTFPSVILQRTWVLPL*MSAEEPTNSGRIEDLRDQI 304 ++ RV NSPNL PT V+ PL*++ PT +GR+ D RD + Sbjct: 1398 VKCRVGTNSPNLRPTIGFVM*IGICSFPL*IAIVWPTIAGRMLDARDHV 1544
>LOC_Os04g16771:12004.t005526:unspliced-genomic chloroplast 50S ribosomal protein L2, putative, expressed| Length = 2530 Score = 58.3 bits (121), Expect = 7e-08 Identities = 25/45 (55%), Positives = 28/45 (62%) Frame = +2 / +2 Query: 308 WSRRSSILPEFVGSSALIYNGKTHVRCRITEGKVGHKFGEFAFTR 442 WSR SSILP VG + I+NGK H+ IT VG K GEF TR Sbjct: 2309 WSRASSILPAMVGHTIAIHNGKEHIPIYITNPMVGRKLGEFVPTR 2443 Score = 38.2 bits (77), Expect = 0.087 Identities = 20/49 (40%), Positives = 28/49 (57%) Frame = -3 / -2 Query: 450 LRFRVKANSPNLWPTFPSVILQRTWVLPL*MSAEEPTNSGRIEDLRDQI 304 ++ RV NSPNL PT V+ PL*++ PT +GR+ D RD + Sbjct: 2451 VKCRVGTNSPNLRPTIGFVM*IGICSFPL*IAIVWPTIAGRMLDARDHV 2305
>LOC_Os12g19580:12012.t01801:unspliced-genomic photosynthetic reaction center protein| Length = 6439 Score = 57.0 bits (118), Expect = 2e-07 Identities = 24/45 (53%), Positives = 28/45 (62%) Frame = +2 / -3 Query: 308 WSRRSSILPEFVGSSALIYNGKTHVRCRITEGKVGHKFGEFAFTR 442 WSR SSILP VG + I+NGK H+ IT +G K GEF TR Sbjct: 1352 WSRASSILPAMVGHTITIHNGKEHIPIYITNLMIGRKLGEFVPTR 1218 Score = 34.1 bits (68), Expect = 1.5 Identities = 19/49 (38%), Positives = 26/49 (53%) Frame = -3 / +1 Query: 450 LRFRVKANSPNLWPTFPSVILQRTWVLPL*MSAEEPTNSGRIEDLRDQI 304 ++ RV NSPNL P V+ PL*+ PT +GR+ D RD + Sbjct: 1210 VKCRVGTNSPNLRPIIRFVM*IGICSFPL*IVIVWPTIAGRMLDARDHV 1356
>LOC_Os07g08660:12007.t00741:unspliced-genomic 40S ribosomal protein S15, putative, expressed| Length = 2095 Score = 42.8 bits (87), Expect = 0.004 Identities = 20/60 (33%), Positives = 29/60 (48%) Frame = +2 / +1 Query: 278 SGESLNGRKIWSRRSSILPEFVGSSALIYNGKTHVRCRITEGKVGHKFGEFAFTRKRRPH 457 +GE + R I+PE +GS +YNGKT + I +GH EF+ + K H Sbjct: 1573 AGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH 1752
>LOC_Os03g58430:12003.t05100:unspliced-genomic 40S ribosomal protein S15, putative, expressed| Length = 2615 Score = 42.8 bits (87), Expect = 0.004 Identities = 20/60 (33%), Positives = 29/60 (48%) Frame = +2 / +2 Query: 278 SGESLNGRKIWSRRSSILPEFVGSSALIYNGKTHVRCRITEGKVGHKFGEFAFTRKRRPH 457 +GE + R I+PE +GS +YNGKT + I +GH EF+ + K H Sbjct: 2042 AGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH 2221
>LOC_Os01g10480:12001.t00922:unspliced-genomic early nodulin 20 precursor, putative| Length = 897 Score = 30.4 bits (60), Expect(2) = 0.11 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +1 / +3 Query: 328 PAGVRRLLRAHLQRQDPRPLQDHRREGRP 414 PA RR R HL+ + RPL H+R RP Sbjct: 399 PAPPRRRRRLHLRLRQLRPLLLHQRRPRP 485 Score = 24.9 bits (48), Expect(2) = 0.11 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 / +2 Query: 453 PIARLRRRRPAVKERGRSKK 512 P ARLRRRRP + R ++ Sbjct: 599 PHARLRRRRPRERTARRGRR 658
>LOC_Os07g48330:12007.t04466:unspliced-genomic cytochrome P450 72A1, putative, expressed| Length = 4299 Score = 26.7 bits (52), Expect(2) = 0.35 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = -3 / -2 Query: 741 SHWHQTSVRPKNIRAMASVNRRCTRRLCW 655 S W +S P + R A ++R C R + W Sbjct: 3248 SWWTPSSAAP*SCRRSACLSRSCYRSMSW 3162 Score = 26.7 bits (52), Expect(2) = 0.35 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -1 / -2 Query: 617 CYNYSSKKMQSRKFCFKCLCFN 552 C+ SS + SR FC CL N Sbjct: 3134 CHRQSSGPVHSRHFCQSCLPMN 3069
>LOC_Os10g34040:12010.t02706:unspliced-genomic nodulin, putative, expressed| Length = 3196 Score = 29.5 bits (58), Expect(2) = 0.53 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 / -2 Query: 291 RLSPLFFILCRNASTNAPFH 232 R+SPLFFIL +N N H Sbjct: 1470 RISPLFFILTKNMHINKKIH 1411 Score = 28.1 bits (55), Expect(2) = 0.53 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = -1 / -3 Query: 554 NHALIPPSLNPPFMLLTSS 498 +HA PPSL PF L TSS Sbjct: 2015 SHAAHPPSLPSPFSLSTSS 1959
>LOC_Os09g27190:12009.t02398:unspliced-genomic RWP-RK domain containing protein| Length = 4431 Score = 35.4 bits (71), Expect = 0.58 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = -1 / +1 Query: 578 FCFKCLCFNHALIPPSLNPPFMLLTSSPFLDRRPSSP*SRDGAS 447 FCF + L S NPP+ LL+ SP RRP+ R+ S Sbjct: 379 FCFLSMFDQRTLYVRSANPPWSLLSRSPEGSRRPARRRGREAGS 510
>LOC_Os07g08630:12007.t00738:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3767 Score = 35.0 bits (70), Expect = 0.80 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -3 / +2 Query: 741 SHWHQTSVRPKNIRAMASVNRRCTRRLC 658 SHWH RP +R A +++RC R C Sbjct: 1676 SHWHNRPHRPPRLRLDAQLHQRCRRPSC 1759
>LOC_Os05g04410:12005.t00337:unspliced-genomic peroxidase 2 precursor, putative, expressed| Length = 2422 Score = 35.0 bits (70), Expect = 0.80 Identities = 17/54 (31%), Positives = 27/54 (50%) Frame = +1 / +3 Query: 217 QLKASMEGSVRRRVPAENKEERGEPERQEDLVSQVFDPAGVRRLLRAHLQRQDP 378 Q++A +RR A P+R++D + + P G RRLLR +R+ P Sbjct: 1296 QIQAGRRRLLRRHRGARRPRRLRHPQRRQDHLRRRHGPQGRRRLLRRRRRRRPP 1457
>LOC_Os09g30280:12009.t02706:unspliced-genomic transferase, transferring glycosyl groups, putative, expressed| Length = 4083 Score = 34.5 bits (69), Expect = 1.1 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = -1 / +1 Query: 602 SKKMQSRKFCFKCLCFNHALIPPSLNPPFMLLTSSPFLDRRPSSP*SRDGASV 444 S + S + F+C C + PPS PP L ++ RR SP R+ A + Sbjct: 1 SSQKISGRLGFRCACAHRKTRPPSPPPPASLGAAAAAAARRACSPKCREAAGI 159
>LOC_Os06g34830:12006.t03180:unspliced-genomic cationic amino acid transporter 4, putative, expressed| Length = 2491 Score = 25.4 bits (49), Expect(3) = 1.2 Identities = 17/45 (37%), Positives = 19/45 (42%) Frame = -2 / +2 Query: 325 RRPARPDLPAVQALPALLYSLQERVDERSLP*RP*AESTSR*SEP 191 RRPARP P + A S S P P A S+S S P Sbjct: 1529 RRPARPSTPPSPSRSAPPASRSSPASTCSPPSPPSARSSSSRSSP 1663 Score = 24.9 bits (48), Expect(3) = 1.2 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = -2 / +3 Query: 88 RSNGRHGCSQPQER 47 R+ GR GC QP+ R Sbjct: 2055 RARGRRGCRQPRAR 2096 Score = 24.4 bits (47), Expect(3) = 1.2 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -1 / +2 Query: 506 TSSPFLDRRPSSP*SRDGASVSA*KQTPRTYG 411 TS+P RRPSSP + S T RT G Sbjct: 1100 TSTPATSRRPSSPSAPRACSARRGWCTGRTPG 1195
>LOC_Os05g46030:12005.t04091:unspliced-genomic myosin head family protein, expressed| Length = 18780 Score = 34.1 bits (68), Expect = 1.5 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = -3 / -1 Query: 339 NSGRIEDLRDQIFLPFRLSPLFFILCRNASTNA 241 ++G ++D LPF++ P +LC NASTN+ Sbjct: 16380 SAGPVKDFSAYATLPFKICPFSGLLC*NASTNS 16282
>LOC_Os08g38160:12008.t03552:unspliced-genomic cytokinin-O-glucosyltransferase 3, putative| Length = 1392 Score = 31.3 bits (62), Expect(2) = 2.0 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +3 / -3 Query: 453 PIARLRRRRPAVKERGRSKKHERW 524 P R RRR A RGRS++ RW Sbjct: 412 PAGRRGRRRGAAPTRGRSRRRRRW 341 Score = 23.1 bits (44), Expect(2) = 2.0 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +1 / -1 Query: 241 SVRRRVPAENKEERGEPERQEDL 309 ++ RRVPA ++ER EDL Sbjct: 1077 ALERRVPAAVRQERAHGGVPEDL 1009
>LOC_Os01g22050:12001.t01941:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 7439 Score = 28.1 bits (55), Expect(3) = 2.4 Identities = 14/49 (28%), Positives = 19/49 (38%) Frame = -2 / -2 Query: 469 RNRAMGPPFPRKSKLPELMADLPFGDPATDVGLAVVDERGGADELRQDR 323 R+ + P P S L+A PFG +GLA G +R Sbjct: 517 RHPPLSPVLPAASSRLSLLAGAPFGCAVATLGLAAASSPPGRPPFSAER 371 Score = 24.9 bits (48), Expect(3) = 2.4 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -1 / -2 Query: 542 IPPSLNPPFMLLTSSPFLDRR 480 +PPSL PP SS FL R Sbjct: 1057 LPPSLGPPLPPRPSSLFLPSR 995 Score = 23.5 bits (45), Expect(3) = 2.4 Identities = 8/16 (50%), Positives = 10/16 (62%) Frame = -1 / -3 Query: 602 SKKMQSRKFCFKCLCF 555 +KK S K+C C CF Sbjct: 2106 NKKFHSIKYCELCNCF 2059
>LOC_Os05g28500:12005.t02498:unspliced-genomic expressed protein| Length = 4019 Score = 28.1 bits (55), Expect(2) = 3.8 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = +3 / -2 Query: 459 ARLRRRRPAVKERGRSKKHERW 524 AR RRRRP + RG RW Sbjct: 466 ARRRRRRPRRRPRGARSTRRRW 401 Score = 26.7 bits (52), Expect(2) = 3.8 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +1 / -2 Query: 274 EERGEPERQEDLVSQVFDPAGVRRLLRAHLQRQDPRPLQDHRREGRP 414 ++RG + E++ G+RR LRA + PL+ RR RP Sbjct: 736 KKRG*N*KGEEIQLPSSSTRGIRRALRARRR*HRHTPLRRRRRRRRP 596
>LOC_Os09g20284:12009.t01762:unspliced-genomic polyamine oxidase precursor, putative, expressed| Length = 10244 Score = 32.7 bits (65), Expect = 3.9 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = +1 / +1 Query: 202 SGSCFQLKASMEGSVRRRVPAENKEERGEP 291 +G C L+AS SVRRR AE+ EE P Sbjct: 1645 AGRCTPLEASATRSVRRRAAAESAEEATPP 1734
>LOC_Os05g14380:12005.t01212:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5861 Score = 26.3 bits (51), Expect(2) = 4.8 Identities = 17/57 (29%), Positives = 22/57 (38%) Frame = -2 / -2 Query: 463 RAMGPPFPRKSKLPELMADLPFGDPATDVGLAVVDERGGADELRQDRRPARPDLPAV 293 R GP P + +A P T + R E R DRRP +PD +V Sbjct: 5173 RTRGPLPPFPPQRHPALASATHTAPTTVASPSPAPFRFHIREKRNDRRPLKPDFISV 5003 Score = 23.1 bits (44), Expect(2) = 4.8 Identities = 8/21 (38%), Positives = 12/21 (57%) Frame = -1 / -1 Query: 554 NHALIPPSLNPPFMLLTSSPF 492 +HA PP +PP + +S F Sbjct: 5303 SHAAAPPPASPPHRIHATSRF 5241
>LOC_Os06g05750:12006.t00461:unspliced-genomic transferase, putative, expressed| Length = 1924 Score = 27.2 bits (53), Expect(2) = 4.8 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = +3 / -2 Query: 6 PTRFPPPSLVAAATRSC 56 P R PPP AAAT SC Sbjct: 1662 PGRRPPPPPAAAATTSC 1612 Score = 26.3 bits (51), Expect(2) = 4.8 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +1 / -3 Query: 340 RRLLRAHLQRQDPRPLQDHRREGR 411 RRLLR H Q P+ HRR R Sbjct: 1394 RRLLRLHPVHQLLEPVPGHRRRDR 1323
>LOC_Os05g39650:12005.t03506:unspliced-genomic phytanoyl-CoA dioxygenase, putative, expressed| Length = 7590 Score = 29.0 bits (57), Expect(2) = 4.9 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -1 / +3 Query: 563 LCFNHALIPPSLNPPFMLLTSSPFLDRRPSSP 468 LCF LI PSL PP +SP S+P Sbjct: 4389 LCFVKLLISPSLPPPCCRPVASPTSSSTSSTP 4484 Score = 26.3 bits (51), Expect(2) = 4.9 Identities = 15/48 (31%), Positives = 20/48 (41%) Frame = -1 / +3 Query: 695 WLQ*IEDVLEGYAGTTSRVNRVQSKICYNYSSKKMQSRKFCFKCLCFN 552 W Q* +L+ Y SRVN +K +Q+ K C FN Sbjct: 2745 WFQ*KNVILQSYFFAASRVNSCSHLCFL*QKNKILQTVK*FIGCKAFN 2888
>LOC_Os10g28970:12010.t02245:unspliced-genomic snRNP protein, putative, expressed| Length = 5633 Score = 31.8 bits (63), Expect(2) = 5.1 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +3 / -1 Query: 459 ARLRRRRPAVKERGRSKKHERWV*GRW 539 AR RRRR + R R + RW+ GRW Sbjct: 389 ARARRRRIQGRRRRRRRGRGRWLCGRW 309 Score = 23.1 bits (44), Expect(2) = 5.1 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +1 / -2 Query: 244 VRRRVPAENKEERGEPERQEDLVSQVFDPA 333 +RRRV E+ E R + +V V +PA Sbjct: 928 LRRRVRVYEAEQSLEGPRADAVVDDVHEPA 839
>LOC_Os10g03380:12010.t00227:unspliced-genomic hypothetical protein| Length = 1059 Score = 32.2 bits (64), Expect = 5.4 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +2 / -2 Query: 380 VRCRITEGKVGHKFGEFAFTRKRRP 454 +RC EG VGH G A R+RRP Sbjct: 785 IRCSCGEGAVGHGQGALARWRRRRP 711
>LOC_Os04g46460:12004.t04176:unspliced-genomic acetylglutamate kinase, putative, expressed| Length = 3355 Score = 32.2 bits (64), Expect = 5.4 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -2 / -3 Query: 427 LPELMADLPFGDPATDVGLAVVDERGGADELRQDRRPA 314 +PEL D P D+G A VDE G + R++ + A Sbjct: 572 VPELRLDADAEQPGVDLGAAAVDEHGVEADAREEDQVA 459
>LOC_Os03g11614:12003.t00962:unspliced-genomic MADS-box transcription factor 1, putative, expressed| Length = 8620 Score = 32.2 bits (64), Expect = 5.4 Identities = 20/58 (34%), Positives = 26/58 (44%) Frame = +1 / +2 Query: 241 SVRRRVPAENKEERGEPERQEDLVSQVFDPAGVRRLLRAHLQRQDPRPLQDHRREGRP 414 S R R E +EE GE E + + PAG R + ++ R L RR GRP Sbjct: 56 SSRERERGEEEEEDGEGEGGAEADREQDQPAGDVRQAQERPAQEGLRALPPLRRRGRP 229
>LOC_Os01g57324:12001.t05137:unspliced-genomic hypothetical protein| Length = 783 Score = 32.2 bits (64), Expect = 5.4 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = +3 / +3 Query: 474 RRPAVKERGRSKKHERWV*GRW 539 RR +++ERGR ++H+ WV* W Sbjct: 117 RRNSLQERGRLERHDFWV*VEW 182
>LOC_Os01g57294:12001.t05135:unspliced-genomic hypothetical protein| Length = 783 Score = 32.2 bits (64), Expect = 5.4 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = +3 / +3 Query: 474 RRPAVKERGRSKKHERWV*GRW 539 RR +++ERGR ++H+ WV* W Sbjct: 117 RRNSLQERGRLERHDFWV*VEW 182
>LOC_Os07g48110:12007.t04610:unspliced-genomic expressed protein| Length = 471 Score = 28.6 bits (56), Expect(2) = 5.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -2 / -1 Query: 346 ADELRQDRRPARPDLPAVQALPA 278 A LRQ R RP PA+ ALPA Sbjct: 252 ASPLRQRRGRHRPPAPAIAALPA 184 Score = 22.6 bits (43), Expect(2) = 5.9 Identities = 7/16 (43%), Positives = 10/16 (62%) Frame = -1 / -3 Query: 611 NYSSKKMQSRKFCFKC 564 N S + + RK CF+C Sbjct: 301 NVSKIREKKRKLCFRC 254
>LOC_Os11g06870:12011.t00579:unspliced-genomic glyoxal oxidase, putative| Length = 1886 Score = 29.9 bits (59), Expect(2) = 6.4 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +1 / +2 Query: 343 RLLRAHLQRQDPRPLQDHRREGRP*VR 423 RL R +R PRP Q H R GRP +R Sbjct: 944 RLRRRAARRVPPRPPQRHVRPGRPDLR 1024 Score = 23.1 bits (44), Expect(2) = 6.4 Identities = 10/14 (71%), Positives = 10/14 (71%) Frame = +3 / +1 Query: 3 APTRFPPPSLVAAA 44 AP R PPPS AAA Sbjct: 316 APPRRPPPSPPAAA 357
>LOC_Os04g51250:12004.t04602:unspliced-genomic expressed protein| Length = 2911 Score = 30.4 bits (60), Expect(2) = 6.9 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 / +3 Query: 459 ARLRRRRPAVKERGRSKKHERWV*GR 536 +R+RRRRPA R+++ RW R Sbjct: 369 SRVRRRRPAAAMDSRARRRRRWTPAR 446 Score = 23.1 bits (44), Expect(2) = 6.9 Identities = 12/38 (31%), Positives = 16/38 (42%) Frame = +2 / +1 Query: 602 KNNYSRSYFVLCLLC*WFQHNLRVHLLFTEAIALIFFG 715 + N SRS F C W Q V++LF + G Sbjct: 1705 QGNRSRSSFSSCPCMQWLQLVTNVNVLFRVTYLSLIIG 1818
>LOC_Os11g11660:12011.t01053:unspliced-genomic conserved hypothetical protein| Length = 1926 Score = 31.8 bits (63), Expect = 7.4 Identities = 20/65 (30%), Positives = 30/65 (46%) Frame = +3 / +3 Query: 474 RRPAVKERGRSKKHERWV*GRWDEGVVEAQALEAKFSGLHFLRRIIIADLTLYSVYSASG 653 RRPA +ER R + R GRW E + +A + +GL R ++ + T +A G Sbjct: 678 RRPARRERRRWRPAWRERRGRWREAGLAREARPVEEAGLAREARPVVEEATSVRGGAAGG 857 Query: 654 SSITF 668 F Sbjct: 858 CGAVF 872
>LOC_Os10g32110:12010.t02531:unspliced-genomic xyloglucan galactosyltransferase KATAMARI 1, putative, expressed| Length = 1597 Score = 31.8 bits (63), Expect = 7.4 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 / +3 Query: 328 PAGVRRLLRAHLQRQDPRPLQDHR 399 PAG RR++ AH R+ RP ++HR Sbjct: 1140 PAGTRRVVGAHPPRRRDRPEREHR 1211
>LOC_Os07g45530:12007.t04190:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 6747 Score = 31.8 bits (63), Expect = 7.4 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -3 / -1 Query: 270 ILCRNASTNAPFHRGLELKARAADP 196 +L RN T F R LEL+A+A DP Sbjct: 4173 VLLRNIKTEDQFIRNLELEAKATDP 4099
>LOC_Os07g40820:12007.t03741:unspliced-genomic conserved hypothetical protein| Length = 1545 Score = 31.8 bits (63), Expect = 7.4 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = -2 / +3 Query: 391 PATDVGLAVVDERGGADELRQDRRPARPDLPAVQALPALL 272 PA G A A LR+ RRP R P ++A+PALL Sbjct: 177 PARPGGRAAAAPLRAAAPLRRGRRPPRALPPGLRAVPALL 296
>LOC_Os05g24970:12005.t02154:unspliced-genomic small nuclear ribonucleoprotein Sm D2, putative, expressed| Length = 2809 Score = 31.8 bits (63), Expect = 7.4 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -3 / +1 Query: 468 VIARWGLRFRVKANSPNLWPTFPSVILQRTWV 373 ++ R GLR+ V + NLW F S TWV Sbjct: 2146 MLGRCGLRYMVLSEVLNLWSIFRSCYFSVTWV 2241
>LOC_Os03g25620:12003.t02260:unspliced-genomic low temperature viability protein, expressed| Length = 4205 Score = 31.8 bits (63), Expect = 7.4 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = -3 / -1 Query: 774 TYNHHSQNQV*SHWHQTSVRPKNIRAMASVNRRCTRR 664 ++ H Q Q +WH T RPK + S+ + +RR Sbjct: 662 SHPQHCQKQSAPYWHHTPARPKQQHIILSIRQPNSRR 552
>LOC_Os11g27799:12011.t004374:unspliced-genomic expressed protein| Length = 2968 Score = 30.9 bits (61), Expect(2) = 9.4 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +1 / -1 Query: 373 DPRPLQDHRREGRP*VRGVCFYAETEAP 456 +P H+REG+ * VCFY + AP Sbjct: 1135 EPSVQDMHKREGKK*QSQVCFYIQATAP 1052 Score = 22.1 bits (42), Expect(2) = 9.4 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = +1 / -1 Query: 223 KASMEGSVRRRVPAENKEER 282 +AS RRR+PAE + R Sbjct: 2410 EASQAKGARRRLPAEGRRLR 2351 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 278,422,065 Number of extensions: 3759622 Number of successful extensions: 21905 Number of sequences better than 10.0: 40 Length of query: 305 Length of database: 55,613,886 Length adjustment: 49 Effective length of query: 256 Effective length of database: 52,856,264 Effective search space: 13531203584 Effective search space used: 13531203584 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
